TCONS_00066941 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066941
Unique NameTCONS_00066941
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length794

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066941 ID=TCONS_00066941|Name=TCONS_00066941|organism=Clytia hemisphaerica|type=transcript|length=794bp
TGCTAGTGGATGTGTCAGTATACGAGATGAAGGTCTTCGTGTGCTGGCTG
TCCACTGTGGTGGATTGAAAAAGATTGTTCTGCAAGGGTGCACTAACATA
ACTGACAATGGTATCAAACCTTTGGGAGACAATTGCAACGCGTTGGAGTT
CATCAATATTTCAGAATGTGAGGCGTTAACTGATCAAACCTTGAAATATA
TTGCTGATGGCTGCCATGAATTAAAGACTTTAGAAGCTGCCCGCTGCTCA
CAGTTCACAGATACAGGCTTTTCTACGTTAGCCCGTGGTTGTCACAGCAT
GCAGAGGCTTGATCTTGAAGAATGTACCTTGATAACCGATCATACACTTC
ACTGTCTGTCGTACAATTGCTCAGAAATTGTCAATTTGACTTTCTCACAT
TGTGAATTGATCACCGATGAAGGAATACGTCATTTAGCTGGAGGAACATG
CGCAATAGAGAAATTGGAAATCATTGAACTTGATAATTGTCCACTCATCA
CTGATCAAGCGCTAGAGTACCTGATGAATTGTCGCTCCTTGAATCGCCTG
GAACTTTATGATTGTCATAATATCACCCGTGGTGGTATCCGAAGGCTTAA
GAGCCGTCTTCCAAACGTTCGTGTTCAAGCCTACTTTGCACCCGTCACCC
CACCACCTGCCACGCCTAATCGACGCCAACGTTCATGTAGATGTTGCGAG
ATATTGTAAAATAGATATAATAGAAGATGATGGTCGCCACCATTGAAACA
CATAGTTTAGAAGCACGCTCTTGTCTTCGTTGAATTTGACTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_462:17955..22815-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066941 ID=TCONS_00066941|Name=TCONS_00066941|organism=Clytia hemisphaerica|type=transcript|length=4861bp|location=Sequence derived from alignment at scaffold_462:17955..22815- (Clytia hemisphaerica)
TGCTAGTGGATGTGTCAGTGTAAGCAGCATATAAAAATGTTTTAATGATA
CAGTTTTATGTTTATATCTTGAGTGAAATACATTGCTTTATTGAAGATTT
CTTTTCTTGTTCCAAAAAAAAAGACTGTCAAACATTTCGAAAATTATGAT
GAAAAATGTTTGTTTTTTTCCACTAAACCAACAATATATCTTTCCTAAAC
TTGGAACTTTGCTGATTTCAAATATGTTTTCAGATTTTTCATATCTTTCT
TGGATCGAAAAGATTTTTGTTCCAGTGGAAAAATCTTTTTTCATCTTCGT
TTTCGAAATTTTGAAATATTTTGGAGTTTCCGCTTGATCTTTTCAACGAG
GTATTACTTTCAATTATATCTTTCCTTCTTCAAGAGCTATGTATCAAAAC
GTGCGAATCGTCAATTTTTTTTGGAATAGACTTTAATTAATATGATTATG
CCTTGATTAAGCCTCTCAATTTAGCCTCGTCTTTCTCCTTTTTCTAATTT
CCAGGGATCCCTTATCTTGGTAATAATGATAATTTTTATATTTTTTTGAT
GTTTTTTTACAGATACGAGATGAAGGTCTTCGTGTGCTGGCTGTCCACTG
TGGTGGATTGAAAAAGATTGTTCTGCAAGGGTGCACTGTAAGTATTGATA
TTGAAGCAAGCTCTATTTTGATACCAAGAGAAACGCTTCTTTNGGTGCAC
TGTAAGTTTTGATATTGAAGGAAGCTCTATTTTGATACCAAGAGAAACGC
TTCTTTTTCACTTTCCTTTTTGTGACCATAGGATAATTAATAAATCACCT
CTCCTGTTTTTAGCCAAATAAGAGACACTTATCGCTTTGTTGAATGTGCT
GTCAGAGAAAAATGTCCTAAACTCAAAATGTGCATAGATACAATCGGACT
AGAAAAACACTCACCCACCCCCGGAAATTACCCCGATTGGGAAATTCACT
CAAAATTTTCGACTCCCCTTTAGAAAATTTAAAACACCTAGAACCTCTTG
GAGATAGGGGTCAGAAACTATGAATGCTTATTTTATTTTAACTCTCGTTT
TATGACTTACGTACTCCTTAAATTCTTTGAAATAAATATCCTTGTTTTTA
TATTTTTTGCAATAGAACATAACTGACAATGGTATCAAACCTTTGGGAGA
CAATTGCAACGCGTTGGAGTTCATCAATATTTCAGAATGTGAGGCGTTAA
CTGATCAAACCTTGAAATATATTGCTGATGGCTGCCATGAATTAAAGTAA
GATGTTTATTCTTTCTAGAAGTTTCTTCGGTCTGAAAGAAATTCTCTACT
TATCAAGATCAATGGTAAAGTTATAGAGTTGTATACCTTCTACCTGCAGA
GCTGTTTCTTTTTTAACTTTCAGAAACTATCTACGCAATTCTATATATAA
TTTTCATCTCTAGGACTTTAGAAGCTGCCCGCTGCTCACAGTTCACAGAT
ACAGGCTTTTCTACGTTAGCCCGTGGTTGTCACAGCATGCAGAGGCTTGA
TCTTGAAGAATGTACCTTGGTATGTATAGATGTTTGTATTTTTGCATTTC
AAAGCGTTAGTTATTGTTTAACATTTTTGAATCTCCTTGACAAATTTCCA
ATTTTTACTGTAAACAGGGAAAACATTTCATTATTCTATCATTCTTTTGT
GAATATTTCCTTAAAGAAATATATAACTTTAGATTAAATTTTCGTGGGGG
TACGCCTGGAGATTCCAGCCCTCTTATGTTGTATCAATATAAGTCATTTT
TTCAAAGAAACCAGTGGAATGAAACTTTGTTTGTTTATTTCTTTAGATAA
CCGATCATACACTTCACTGTCTGTCGTACAATTGCTCAGAAATTGTCAAT
TTGGTAAGTAGTTACACGTTTTTTATAAGAACAAACTATGTAAGAACATA
AGGCTTTGATGGCCAAAATGTTAAGAACAAGTTAAGAACATTTTAAGGCT
TCGCGGACTCGAAAACAGGCAATTTCTTAGGAAAATTGACAAAAACACAT
AAAAAATGGAGAAAATAAGAACATGTTAAGAATATTTTTAGGCTTGGAAC
TCAGAAAGTTAAGAACATCTGAAGGCCTCAAAAATTTTGGATGTTCTTAT
AAAAAAAACAACGTGTAATTAGACTCGTTTTCCCTAGTGGATTTCGCTCT
ACAAGAACTCAACCTAACCGATTTTGTTTGCTGAAACTTTTTGCATGGTA
TTTCTAAATTAAAAAGAATTGTTTGTTTTAACTTCCTCGTGGAACATTTT
TAGAAAATTTATTTTCTATAATAAACACATGGTCACCAAAGCAATAGATG
TGGTCGGTGTGGTTATTTCTATATTTTTCATATTTTTCACATAAAAAGTT
TTCCGTCCTAACAAGGAAGTTGAGCAGACATTGACAAAATTTTAGCCTTT
ATAGAAAATTTCTAACTTGGAAAAACAAGGTAGTTTAAAAATCAGAGCAT
TTAAGAGCATTTACTCGTGCTCATTTGTTTTCTTAGGGTAAAATTCTCCA
CTGAAACTCTTGAAACTATAAGTTCCCTTTTGCGTTTTTCTAAACGTGTT
CACTGCCACTCCCCATTTTTGGAAATCGAAAATCGCACAGAACTTTGCGC
AGATTTCAAAAAATAAAAAGCAAGTTAAAGCAACTACGAGTACTCGCAGT
CGCTAATGAACGTGTTAAACCAATCTCGATACGAAGTCCCTATAGAAAAA
TTAAATACTCTTTTACAGACTTTCTCACATTGTGAATTGATCACCGATGA
AGGAATACGTCATTTAGCTGGAGGAACATGCGCAATAGAGAAATTGGAAA
TCATTGAACTTGATAATTGTCCACTCATCACTGATCAAGCGCTAGAGTAC
CTGATGTAAGTTCTGTTACCAAATCTGCTTGATATCCATTATCATTTAAA
GATGCTCCTGTGCCAAAGATCCTCTTTCTTTTAAATTAACACATTACAGC
TTCAGATTTACTGTAGAAATCAGTTCCGCTGAGGAAAGAAGTAATGTTAT
CCCCGCACTGGGAAATTTTCAGCCTCACTGAGAAAATTTTTAAGTATTCA
CACCAGATATTTGGAGCTGTCAATAACAGATATAGAACCACCCCCCCCCC
CCCCCCTCTGGGATATTGAAAAAAGCTATTCTTTTTTTTCATTTTTATTT
GTTTTTTTTTTTTTTTTAAAAAAAAAAAAAAAACCCCCCCCCCCCCCAAT
CCTGAGACTTTGAAAACAGCTCATTTTTAATTTCCATTGGAATTAGGATT
TTTTTTCATATCATTAAAATAAAACTATATGTTCTGCTTTCAAACCTTTT
ACACAAATTATATAAGTCTTGAGTGTTACAGTTTTAAGCAAACCAAAAAA
ATCGAAACGTTTTATAAGAACAAGCTATATAAGAACAAGGCTTCGATGGC
AAAAGATACAATTTAAGAATATGTTAAGGCATTATGGTCTCTAAAACACC
CAATTTCTAAAGAAATTGCGCAAAAACACTCACAAAATGGTCAAGTTTAA
AACATTTTAGAACATTTTAAGGCTTCTAACTCAAAAAAATTAAGAACATT
TGAAGGCTTTAATAATTTTGAATGTTCTTATAAAAAACGTCTATGACTGA
TCAAATTTTTAACTAGAATATTCTGCTCATCCAGGTGTTCAGTTTAATAT
AATGTCATCAGGCTACTAAAAGACAATTTACAAAATCGATTGACTAATAA
TTGAACCATTACAATAAGATCAATCTATTGTTAAGATGTTTACTTTAATT
GCCAAAGAATTACGTTTTTTTTCGTGTCAGTGAAAAATAATTTCAAGTTT
TAATTACTGTAATTAGAAAAAATCGAATTAAAATTTTCCATAGTAACACT
AACCTAACTAGCCATAGCATATAGAAATTTTAGAAATTCCTCTATGATTC
TTCTCCCTCTAATTCTTCTCACTCTAATTTCTTTTATCGTTTTGACCTTT
TGAACACTGAAGCATAGATAGATAGCAAGTAGAGCTAGAACAAAACTTCG
GATTTAGACCAATTTTCTGACAACCCCACTGTTGGTTTCTTGTTTAAATT
TTCAAACTTTTTCCAATAATGACAAAATGATGAACATTCTTATTATTTCT
TTAGGAATTGTCGCTCCTTGAATCGCCTGGAACTTTATGATTGTCATAAT
ATCACCCGTGGTGGTATCCGAAGGCTTAAGGTACGACTTTTTTATTTTAT
GCACCTATCAACCCTTGGAGACTGGGTTCGAGTTTACCAGGAAGGAATGA
TGTCAAAATGTCTGAAATCGTTGCTTGCGTGAACATTCTCAAAGACAACA
TATTTAGACGTCATTTCCTTGTAAATTCATTACCAGTACCCTCCGAAGCC
GACCGCGTAGTAAAGGATTGATAGGTGTATAACACGTATAGTTGAAGCGA
TTTTCTAATAGGAGCGTGACCACGAGGGCTAATCATTAATTGAAATCCGC
AAATAGACTTTTCTCTAGAAAAAATTAGTTGATTAACGATTTTTAAAATG
TTACAAGAAGCTCCTCCGCGTGATTGAGTATGTCTTCATGCTTTGTCAGC
ATTGTAATGGAAACAAGTTTAATGATAAAAAATATGCGGTCTGGTAACTT
ACTATGTACCAACCATTTTGATGGCCTTGGATAACAAGACACAATATCTC
CTTTCCTCTTTATTATAGAGCCGTCTTCCAAACGTTCGTGTTCAAGCCTA
CTTTGCACCCGTCACCCCACCACCTGCCACGCCTAATCGACGCCAACGTT
CATGTAGATGTTGCGAGATATTGTAAAATAGATATAATAGAAGATGATGG
TCGCCACCATTGAAACACATAGTTTAGAAGCACGCTCTTGTCTTCGTTGA
ATTTGACTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041837XLOC_041837Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066941-exon-scaffold_462-1575043694:22797..22815TCONS_00066941-exon-scaffold_462-1575043694:22797..22815Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1575043694:22179..22253TCONS_00066941-exon-scaffold_462-1575043694:22179..22253Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1575043694:21570..21700TCONS_00066941-exon-scaffold_462-1575043694:21570..21700Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1575043694:21297..21402TCONS_00066941-exon-scaffold_462-1575043694:21297..21402Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1575043694:20963..21019TCONS_00066941-exon-scaffold_462-1575043694:20963..21019Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1575043694:19961..20097TCONS_00066941-exon-scaffold_462-1575043694:19961..20097Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1575043694:18636..18711TCONS_00066941-exon-scaffold_462-1575043694:18636..18711Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1575043694:17955..18147TCONS_00066941-exon-scaffold_462-1575043694:17955..18147Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1510915933:22797..22815TCONS_00066941-exon-scaffold_462-1510915933:22797..22815Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1510915933:22179..22253TCONS_00066941-exon-scaffold_462-1510915933:22179..22253Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1510915933:21570..21700TCONS_00066941-exon-scaffold_462-1510915933:21570..21700Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1510915933:21297..21402TCONS_00066941-exon-scaffold_462-1510915933:21297..21402Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1510915933:20963..21019TCONS_00066941-exon-scaffold_462-1510915933:20963..21019Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1510915933:19961..20097TCONS_00066941-exon-scaffold_462-1510915933:19961..20097Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1510915933:18636..18711TCONS_00066941-exon-scaffold_462-1510915933:18636..18711Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1510915933:17955..18147TCONS_00066941-exon-scaffold_462-1510915933:17955..18147Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1491911889:22797..22815TCONS_00066941-exon-scaffold_462-1491911889:22797..22815Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1491911889:22179..22253TCONS_00066941-exon-scaffold_462-1491911889:22179..22253Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1491911889:21570..21700TCONS_00066941-exon-scaffold_462-1491911889:21570..21700Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1491911889:21297..21402TCONS_00066941-exon-scaffold_462-1491911889:21297..21402Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1491911889:20963..21019TCONS_00066941-exon-scaffold_462-1491911889:20963..21019Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1491911889:19961..20097TCONS_00066941-exon-scaffold_462-1491911889:19961..20097Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1491911889:18636..18711TCONS_00066941-exon-scaffold_462-1491911889:18636..18711Clytia hemisphaericaexon
TCONS_00066941-exon-scaffold_462-1491911889:17955..18147TCONS_00066941-exon-scaffold_462-1491911889:17955..18147Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:17955..22815 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (5.54262 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.303572	2.8869	4.59614	0.608514	3.44476	4.06477	4.20573	2.81667	5.32424	1.2304	5.54262	0.710234	0.594605	0	5.25422	0.981351	1.48863	0	6.15602e-09	0	0	4.48238	2.58479	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066941 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
100200300400500600700Expect = 4.64e-84 / Id = 54.08SequenceFXL20
Match NameE-valueIdentityDescription
FXL204.642e-8454.08F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBX... [more]
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