TCONS_00066940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066940
Unique NameTCONS_00066940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length327

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066940 ID=TCONS_00066940|Name=TCONS_00066940|organism=Clytia hemisphaerica|type=transcript|length=327bp
CGAAGCTTTTCGGTACCGTAAACTTTACCCGACGCTTTCAGCAGCGCGTG
CgcaattaaaaatttattttgataagcGAGATCTCTCCTCTAGACGCCTG
AAGAAATGGTTGTTGTTGAAGCTTGAAGGGAGTTTTCATCCATTAGCATC
GTCTGAAATTTTACTGAAAAGGCTTGGTTTATAACGTTATTGCAAATATG
ACAGCTGAAGTCGAAACTGCACAGACAGAAACTGTCACTTCCCCTATGGA
AGAAACTCCAGCTGAGGACCCTTGTGATGGACTTTGGTCATAAACAAGAA
ATTATCATGCGCGTCACTTGAGTTGAT
Run BLAST on NCBI

transcript from alignment at scaffold_462:14806..15838-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066940 ID=TCONS_00066940|Name=TCONS_00066940|organism=Clytia hemisphaerica|type=transcript|length=1033bp|location=Sequence derived from alignment at scaffold_462:14806..15838- (Clytia hemisphaerica)
CGAAGCTTTTCGGTACCGTAAACTTTACCCGACGCTTTCAGCAGCGCGTG
CGCAATTAAAAATTTATTTTGATAAGCGAGATCTCTCCTCTAGACGCCTG
AAGAAATGGTTGTTGTTGAAGCTTGAAGGGAGTTTTCATCCATTAGCATC
GTCTGAAATTTTACTGAAAAGGCTTGGTTTATAACGTTATTGCAAAGTAA
GGGTTTTGAAGTTTGCTCTTTGGATTCTATTTTTCCAGTAGGAGATTGCA
CAGCTCTTATATTGTCTATTTTTTCGCATTTCAGTATGACAGCTGAAGTC
GAAACTGCACAGACAGAAACTGTCACTTCCCCTATGGAAGAAACTCCAGC
TGAGGACCCTTGTAAGTAGAAATTTACGTAGAGCTAGAAGTTGCCAACCT
CTGTCAAATGTTAGGGTAATTGATTGTATTTGCTTGTCAAATAGAACCAG
ACCTTAGTTTTGCATACTGGTAGATAATTTAGTCAAACCAAAAAGATTTC
TTTTGGGTCCATTAAAATGTTCATGAGGTGTAGGGATTTTTCCAATTCTT
TGAATTACTGAGGAGTCCAATGATGCAACAGAAGGTCATACCCAATCCAC
GTAATCTTGTCTAGTAGCGGTCAAATTTTTGTTTTGGATCAGCCTTTAGG
CTTTAGACCTTCCTTCTAGGAAATCTGATCTTGTTCAGTCCTGACAGGTA
CTGGCCACTCGTTAATGTTTAGGGGAGCCTTCCAAACTCGTACGGAAAAC
GTCAAATGGACGTTTAGGGGGTAGGGGTTTAATTTCTTGACATTCTTTTG
TGCCAAATAAATTTTCACCAGAAATATCAGGACCCTCCCAGTGCTCCAGA
AACTTCCGGAGTTTTCCAGAGCAGCTAAAAAACACTAAAGTTCCGGAGCT
TTTCCGGTGCTTCCGGAGCAAGCGATTTTTAACATGTTAAAACCGTTTAA
ACGTAGTTACAAAAAATATTCATCCCCAGGTGATGGACTTTGGTCATAAA
CAAGAAATTATCATGCGCGTCACTTGAGTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041836XLOC_041836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066940-exon-scaffold_462-1575043694:15643..15838TCONS_00066940-exon-scaffold_462-1575043694:15643..15838Clytia hemisphaericaexon
TCONS_00066940-exon-scaffold_462-1575043694:15478..15554TCONS_00066940-exon-scaffold_462-1575043694:15478..15554Clytia hemisphaericaexon
TCONS_00066940-exon-scaffold_462-1575043694:14806..14859TCONS_00066940-exon-scaffold_462-1575043694:14806..14859Clytia hemisphaericaexon
TCONS_00066940-exon-scaffold_462-1510915933:15643..15838TCONS_00066940-exon-scaffold_462-1510915933:15643..15838Clytia hemisphaericaexon
TCONS_00066940-exon-scaffold_462-1510915933:15478..15554TCONS_00066940-exon-scaffold_462-1510915933:15478..15554Clytia hemisphaericaexon
TCONS_00066940-exon-scaffold_462-1510915933:14806..14859TCONS_00066940-exon-scaffold_462-1510915933:14806..14859Clytia hemisphaericaexon
TCONS_00066940-exon-scaffold_462-1491911889:15643..15838TCONS_00066940-exon-scaffold_462-1491911889:15643..15838Clytia hemisphaericaexon
TCONS_00066940-exon-scaffold_462-1491911889:15478..15554TCONS_00066940-exon-scaffold_462-1491911889:15478..15554Clytia hemisphaericaexon
TCONS_00066940-exon-scaffold_462-1491911889:14806..14859TCONS_00066940-exon-scaffold_462-1491911889:14806..14859Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:14806..15838 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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min expression (0 tpm) - - (0.845686 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.37303	0	0	0	0.514372	0.845686	0.471557	0	0	0	0	0	0.252596	0	0.225712	0	0.599559	0	0	0	0.354336	0	0	0.393153	0	0	0	0	0.414197	0.421546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
ZOOM
x 1
POSITION
0
CGAAGCTTTTCGGTACCGTAAACTTTACCCGACGCTTTCAGCAGCGCGTGCgcaattaaaaatttattttgataagcGAGATCTCTCCTCTAGACGCCTGAAGAAATGGTTGTTGTTGAAGCTTGAAGGGAGTTTTCATCCATTAGCATCGTCTGAAATTTTACTGAAAAGGCTTGGTTTATAACGTTATTGCAAATATGACAGCTGAAGTCGAAACTGCACAGACAGAAACTGTCACTTCCCCTATGGAAGAAACTCCAGCTGAGGACCCTTGTGATGGACTTTGGTCATAAACAAGAAATTATCATGCGCGTCACTTGAGTTGAT50100150200250300Sequence
Match NameE-valueIdentityDescription
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