TCONS_00066938 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066938
Unique NameTCONS_00066938
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length633

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066938 ID=TCONS_00066938|Name=TCONS_00066938|organism=Clytia hemisphaerica|type=transcript|length=633bp
TAGNTTGTTATAAAAAAGCCAGATGTATATAAAAGCCCAACTGGAGACAC
GTATATTGTTTTTGGAGAAGCCAAGATTGAAGACTTATCACAACAAGCAC
AAGTACAGGCTGCTGAAAAATTCAAGGAACCAGAACCAGTGAACCCAGCT
GTGTCAGATACCAAAGTTGAAGCTGCTGATGCAGAAGAATCTGACGATGA
AGAAGTTGACGAAACTGGAGTCGAAGAAAAAGATATTGAACTCGTTATTC
AACAATCGAACGTTTCTCGTAAGAAGGCCATAAAAGCACTGAAAAAGAAT
GATGGTGATATTGTTAATGCTATCATGGAACTGACGATGTAAATGGCAAA
ACTATCAAAACCTTCAAGCATTCTGACATCTACGCAAATCAATACACAGG
GATTGTGTTTGATGAGTGGGGCATACAACCTCATGTACAAAACCACCAAA
CTTTGTATACAGACCTCtttgtaataaaatataaataaaccaCACCTCGT
TCATTCGTTCTTCAGTATTCTCCGTGTGGTTCCAGTTCCCATTGTGATTA
GCTCCTTGTCCCGGGGAGAAAGGGATGCtgtgagccataagggtaccctT
ATTTATACCGAAAAAATCTCTTTtcgaaataat
Run BLAST on NCBI

transcript from alignment at scaffold_462:7179..12072-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066938 ID=TCONS_00066938|Name=TCONS_00066938|organism=Clytia hemisphaerica|type=transcript|length=4894bp|location=Sequence derived from alignment at scaffold_462:7179..12072- (Clytia hemisphaerica)
TAGNTTGTTATAAAAAAGCCAGATGTATATAAAAGCCCAACTGGAGACAC
GTATATTGTTTTTGGAGAAGCCAAGGTAGGTACAACCATGGATGTTTGTT
TCAATATTGGTTGTCGTGATTGCATGTCACCTTACAAGGTGTCTTAAAGA
AAACTACTACACTTTTTTTACAAGCAACCCCGATTTTCGGCTCAGGGTTG
GAGTTGCTATGGATTTAAGCCAAAATGTTGCTTATGGAATTTCAGTCTAA
AATGCCTAGCAACTTCAAAAAACTTTGCTTTTTATCTCATTTTGTGTCCA
AAATACCTCGTACACATTTTAATGAAGAATAATGCGAGAATTTTGAGGCT
TTTTGGTTGCTTTTTTCAGTTCAAGCTCAGTTTCAGGGCTCGGTTGTTAA
GACCAAGTTGCTTATTTGGCCATTCTCAGGCTGAACCATTAGCAAATGGG
TTGCTTATAAAAAAATTTGTAGTTATTTAAAATGTGCACAATAGAGGAGA
TATGGTCCCTCATTTTGCACTATGTAATGGTATATCTTTACCCCCTGGTG
ACTAGGGTGCGTCATTTATATTACATTCTGTTCCTTTTCACCAGACCAAT
GTATGATCTCTCCTTTCATGGGGGAGGGGGGTGGATAAAATGACACAGAA
ATTTTTAAGTCGAAAGAAATTGTGATTGCTCCAAACAAAATTACTTCTTG
TCATTCAATTAGTTCCCTTTAGTTGGAAGCTTCTTTGAAATTTTAGCTGT
AANTGGATAAAATGACACAGAAATTTTCAAGTCGAAAAAAATTGTGATTG
CTCCAAACAAAATTACTTCTTGTCATTCAATTTAGTTCCCTTTAGTTGGA
AGCTTCTTTGAAATTTTAGCTGTAATTTTTAATTTTAGATTAAAAACATG
TAGATTCAAAAAGTTCCTATGATCCAATAAGGGATCTGAGTACAATTTGG
AGGTTTCTTTTGTCATAACATGGTTTTTGAAGTACAACCTTGTCCCCACC
CTGCCAAAAGTGTCCACAACTCCTGGGGTAAACAAGAAATTATATTTAAA
ATGATAATTGGGAAAGTGGACTTGTGTAGGCTTTTAGTACTGTGTTATAC
TTTGCCGCTTTGTAATTTTGAAATGTATTCTCCAAAATTTAGATTGAAGA
CTTATCACAACAAGNTTACTTTACCGCTTTGTAATTTTGAAATGTATTCT
CCAAAATTTAGATTGAAGACTTATCACAACAAGCACAAGTACAGGTATAA
CTAACTTTTCACCCTGTATACTGCATCAATGTTTCAACCTGTTTTTCATA
TTTTAAAACTAGGAATTTATAAGAACATAAATTCTCTACTCGCATTGCTA
ATGTTAATGCTAATTTTATCAATTTATCATAATAATTTTGTTTAGTTATT
GTTAAGTGAAATTATTTTAAAGGGCTAGGTCCTAATTAATTCAACAACCG
TTCAACTAACAGAAAAAATAATTAAAATGGTACATCTCCATTTTCAGGCT
GCTGAAAAATTCAAGGAACCAGAACCAGTGAACCCAGCTGTGTCAGATAC
CAAAGTTGAAGCTGCTGATGCAGAAGAATCTGACGATGAAGAAGTAAGAA
ATTCCTTTTGAAAAATAGTATCACTTTGATTCTGATTCGAGGGGACAGAT
GTAAATTTTTTAAATCGTGCTTGGGACTTTAACTGCCCTTTAAAGATTGA
ATAATACACAATTGAATGGCTTCATGAATCAAATCTGTTGACAATGGATA
AAACCAGTGTCATAAAACGTACAAAATCTAGCTGGAAGCGATTCGGGAGG
CCAGCTTCAGCCCATCAACACAACAAAATATTATTAGAGACGAATGCCTA
AAAAGTCACAGGAAAAAATTATTGATTCCCTAGCCTAGGGATTGTTCATT
TTCAGATGTGTTTTTTTATTCGGTCACATTAGTCTAAAATTTTAAGTTCG
GGAAAGTAAGGAAACTAGGGAAACCTATTCTCCCATGTTGGAAGTGTATT
ACCAATGTGTTAGTGAAAACGGATTTCCACATGTGGAAAACTAATATTTT
TAACTTTCTAGTTGCCCATTCAGAATTGCATCGGGAAATTAAAAGTCCCA
AGTTTTTCTAAACTGATTATGGATGAGTCGGGAAAAGAGAGATCACGAGT
TTTTAAAATGATTACTTTCTACAGGCTAGGGAAAGGAAATATCACGAATT
GTGACCTTGCTTGCTTTATTCTATTCTTTCTCTGGATTGGGAAATGTGAT
TTCTTGAATTAGGGAAATAAAATTTCCCACATTGGGAAATTCGATTTCCC
GAACTCTTTAATTTGAGTGCATCCTTTAAACAATTAATTAAATCAGAACT
TATTTTTTAAACTGTCACAAATTAGAGCCTAAGTTCGGAAAAATTATTTT
CAGGTTAGGGAAAATTGATTTCCCACCACGAGTGATTTTTCACTCAAAAG
TGTTCGAGTCGTATGTAAAGCAAACCATTATAAGGGTGTATTCGATCAGT
GTGTAACACAACGCTAAAGATGAAGCGTCCCGCCAGGGCGGCCTCATTCG
TTCGCAATGGACTTGCGTCGCAAGGGCTTAGTGGATCGGTGAGACGGGTT
TGAGGTCATTAAGTTGGCTCTCTAGTGCAGCTCCACTGTTGTGACAAAAG
TGCTGGGATTCTCAAAGTAGCACAAGTACATGTCAGAACGAATGAGAACT
ATCGAACCAATGCTCACAGAATGATCGAATACATTTACAGTATGTGGCCC
CCAAAACGGCGATCAAATTTGAAATTTCTCTCAAATCTAGAGGAAAAGAG
ATTTTACAAAAATTTTTGCTGCATGAAAACNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAACAAAAATCGTTTAATTCTGATAAATCTACAAGTC
AGAATCTTCATTTTAATGAAAACCTCCGTTTTGGGGGCCGTCTCCGTTTT
GGGGGCCGTATACTGTATTTATTTTACCAGCTTTCTATAAATCAGGATTT
AATTCGTGAATATGGGTAACCCTATGGGGTTTTATTGGGGTTCGCTCAAG
AAAAGCACTTTTTAATAATAGGGAAATTTAACATCTATAGATAGTCATAA
GATTGGGAAATTTCATTTCCATAACTAGGGAGCTGTTGCATCTTCCCTAT
CTAGGGATTGGTTAGGGAAAAATCTAGATTTCCAGATCTGGAAACATGCA
TTTCCATAGCCTAGGAAATCAAAAAAATTTTCCTTTGAGTAAAGCGTCTT
CCCTAAGTAAAAAATTTCACCTTTTCATAGGTTGACGAAACTGGAGTCGA
AGAAAAAGATATTGAACTCGTTATTCAACAATCGAACGTTTCTCGTAAGA
AGGCCATAAAAGCACTGAAAAAGAATGATGGTGATATTGTTAATGCTATC
ATGGTAAGTGGTCCACATCTTTGCTTTTCTCTTTTTCTATGTATGATGGA
AATCTTTCTTTCTGAGCTGGGAATTTATAAATAATTTCGGGTTTTAATAA
GAATTCCTTACAATGACTTCTCTCTTACTTTACCACAGGAACTGACGATG
TAAATGGCAAAACTATCAAAACCTTCAAGCATTCTGACATCTACGCAAAT
CAATACACAGGGATTGTGTTTGATGAGTGGGGCATACAACCTCATGTACA
AAACCACCAAACTTTGTATACAGACCTCTTTGTAATAAAATATAAATAAA
CCACACCTCGTTCATTCGTTCTTCAGTATTCTCCGTGTGGTTCCAGTTCC
CATTGTGATTAGCTCCTTGTCCCGGGGAGAAAGGGATGCTGTGAGCCATA
AGGGTACCCTTATTTATACCGAAAAAATCTCTTTTCGAAATAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041836XLOC_041836Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066938-exon-scaffold_462-1575043694:11998..12072TCONS_00066938-exon-scaffold_462-1575043694:11998..12072Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1575043694:10829..10861TCONS_00066938-exon-scaffold_462-1575043694:10829..10861Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1575043694:10480..10575TCONS_00066938-exon-scaffold_462-1575043694:10480..10575Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1575043694:7620..7742TCONS_00066938-exon-scaffold_462-1575043694:7620..7742Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1575043694:7179..7484TCONS_00066938-exon-scaffold_462-1575043694:7179..7484Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1510915933:11998..12072TCONS_00066938-exon-scaffold_462-1510915933:11998..12072Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1510915933:10829..10861TCONS_00066938-exon-scaffold_462-1510915933:10829..10861Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1510915933:10480..10575TCONS_00066938-exon-scaffold_462-1510915933:10480..10575Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1510915933:7620..7742TCONS_00066938-exon-scaffold_462-1510915933:7620..7742Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1510915933:7179..7484TCONS_00066938-exon-scaffold_462-1510915933:7179..7484Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1491911889:11998..12072TCONS_00066938-exon-scaffold_462-1491911889:11998..12072Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1491911889:10829..10861TCONS_00066938-exon-scaffold_462-1491911889:10829..10861Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1491911889:10480..10575TCONS_00066938-exon-scaffold_462-1491911889:10480..10575Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1491911889:7620..7742TCONS_00066938-exon-scaffold_462-1491911889:7620..7742Clytia hemisphaericaexon
TCONS_00066938-exon-scaffold_462-1491911889:7179..7484TCONS_00066938-exon-scaffold_462-1491911889:7179..7484Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:7179..12072 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.32733	0	0	0	0	0	0	1.61491	0.937404	1.95121	4.15614	1.32801	0.469765	3.08194	1.88978	4.24873	3.10422	0.811082	1.98291	0	1.16418	0	0.99697	0	0	0	0	0	0.991249
Blast
[Close]
BLAST of TCONS_00066938 vs. Swiss-Prot (Human)
Match: NACA (Nascent polypeptide-associated complex subunit alpha OS=Homo sapiens GN=NACA PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.965e-29
Identity = 75/111 (67.57%), Postives = 84/111 (75.68%), Query Frame = 1 
Query:    7 VIKKPDVYKSPTGDTYIVFGEAKIEDLSQQAQVQAAEKFKEPEPVNPAVSDTKXXXXXXXXXXXXXXXXXXXXXXXIELVIQQSNVSRKKAIKALKKNDGDIVNAIMELTM 339
            VI KPDVYKSP  DTYIVFGEAKIEDLSQQAQ+ AAEKFK        + +        EES++EEVDETGVE KDIELV+ Q+NVSR KA++ALK N  DIVNAIMELTM
Sbjct:  105 VITKPDVYKSPASDTYIVFGEAKIEDLSQQAQLAAAEKFKVQGEAVSNIQENTQTPTVQEESEEEEVDETGVEVKDIELVMSQANVSRAKAVRALKNNSNDIVNAIMELTM 215
The following BLAST results are available for this feature:
BLAST of TCONS_00066938 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NACA2.965e-2967.57Nascent polypeptide-associated complex subunit alp... [more]
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