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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066907 ID=TCONS_00066907|Name=TCONS_00066907|organism=Clytia hemisphaerica|type=transcript|length=2538bpRun BLAST on NCBI transcript from alignment at scaffold_462:794649..805068+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066907 ID=TCONS_00066907|Name=TCONS_00066907|organism=Clytia hemisphaerica|type=transcript|length=10420bp|location=Sequence derived from alignment at scaffold_462:794649..805068+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066907 vs. Swiss-Prot (Human)
Match: CRFR2 (Corticotropin-releasing factor receptor 2 OS=Homo sapiens GN=CRHR2 PE=1 SV=2) HSP 1 Score: 82.4185 bits (202), Expect = 1.995e-16 Identity = 93/389 (23.91%), Postives = 153/389 (39.33%), Query Frame = 3
Query: 273 CKIEFDGLWQCWPPTPINETVRIQCSSLIFKPGYIT-----RKCLPNGKWDRLSKTIISTCKYLSFDEMRKRKSDLLYSTFDQSKHQFIEKELKRVDEQAKHVKTFTTIDVYMRYIDLGICFISLILIVCFVSSKDQRFILHKYLILAFFLMEPLYLFNELYLNDELHVQKT--CTIVWLFKMYLIMVQISMMFSEGFYQFRQFYFVFIT---KSNVYKYIAFSYGFPVIIVFGIYFPIMHSTISFADPFRVCWSYYERQK-YSYIMYTPMFLLLFLNLMITIYMMNLIITKLRGEKTTEFNKAKKGARGFMVLVVLLGFGYMITLMGPKYNYPYQ----YVKAVVQPLQGILVCLLQVIFSQQVFKGYRRWLKKCLRRHNEERHFSER 1394
C D + CWP + V C Y T R+CL NG W SK S C+ + D ++RK DL Y + + L A V F + F++L I C R ++H LI F L ++ +L ++ E+H C + Y ++ MF EG Y + T + ++ +I + FP+I+ + I + + + CW E YI P+ L+L +N + ++ +++TKLR T+E + +K + +VL+ LLG YM+ + P + Q Y + +Q QG V + F+ +V R+ R H + H S R
Sbjct: 40 CNTTLDQIGTCWPRSAAGALVERPCPEYFNGVKYNTTRNAYRECLENGTWA--SKINYSQCEPILDD--KQRKYDLHY------RIALVVNYLGHCVSVAALVAAF-------------LLFLALRSIRCL------RNVIHWNLITTFILRNVMWFLLQL-VDHEVHESNEVWCRCITTIFNYFVVTNFFWMFVEGCYLHTAIVMTYSTERLRKCLFLFIGWCIPFPIIVAWAI------GKLYYEN--EQCWFGKEPGDLVDYIYQGPIILVLLINFVFLFNIVRILMTKLRASTTSETIQYRKAVKATLVLLPLLGITYMLFFVNPGEDDLSQIMFIYFNSFLQSFQGFFVSVFYCFFNGEVRSAVRK------RWHRWQDHHSLR 384 The following BLAST results are available for this feature:
BLAST of TCONS_00066907 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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