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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066905 ID=TCONS_00066905|Name=TCONS_00066905|organism=Clytia hemisphaerica|type=transcript|length=1228bp
cgcaaattcgatttttccctgtcaaaaaatcgaatgtttggagcccgaaa
acctgggctcaaaacattcgaaaattcgCAAAATCTAGCATAGGCTAGCA
TTACGGTGCATGATGAGTCCTGAATCTGCGAACCCAGTTCAAAACAAGTG
TGACATGAGGTACTATAgtgattattattattatcattttgtCTACTCCC
AGTCAATTGAAGGAATCCCAGCCAAAACAGTGGATACATTTCTTGACaat
ctacaacaagaatctgcACGTAAAATCCAAGCTTCTTGGAGCGGTTGGAA
AACGAGAAAGGTTATGAGGGAAATTGCACCTCATTTAGTGAAAGAAAAGG
CTGCAATATTACTACAGCGCCAGATTCGGAGATGGTTGGAGAAGGTGCGA
AAAGTAAAACAAGATGCTCGATTGGATATGATTCCTGATGGGTTGAACGA
TGAAAGAAgaatcgaactttcgaatgtTCTGGTCAATATTCGAGAAAAAT
TCCCTAAAGTTGATGTCAGCGACGAAGAACTTATACAAGGCCATCTTaaa
GCCAATCAAATGCTCAATAACCACGTGATAGGGTTACGATCAATGAGAAG
ACGAGATGACCATCGACGCGCTCTGATTGGTCAATTAACCATCCAATCAG
AAACGTTATCGCGAATGCCAAATTTGAGCTCAGCCAATGAAATGACGTTA
GAGCAGCTGGCGTCACGTTCGACGCCCGTCATGGTAGCGGCTCGTAAACA
ACACGTGGAATTTATAAACGATTTGAAAAGGCCCTGGTGGGATAGGCTAT
CTGATGAATCGGCCGTTGAAGACCCTAACAGGCCCACGGTGCTTGGGAGT
CATGTAATAGACTATGAAAAGAATTTCTAAGATAATGTTTTCAATTTGAG
TGAGACTGGCTTGTCGGTGAAGTTTGAGTGGAGCTATTTAAAGGTAAGAT
TGTTTTCTCGTGTTTTGTATTTGCTTCAAATGTGGATAGGATTGAAAAGA
GCTCGAACGAACTGTTGGTGGGATgagatttttggcaaaaataccTGACA
GTTTTTTGAGGGATTCTGAAATTATGGTCCTTCCAATATATATCATCCGG
GTGGAGTTTTATACTAGCACCTTTATTCATcgttttgaaaagtgaaaagg
aAAAGGCTTTACTTTAAAAGTCGTTAACGGTTATTCGAATTAAAATAGAC
GGGCCATACTTTTAAGCCATCAAAAAAA Run BLAST on NCBI transcript from alignment at scaffold_462:773512..778905+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066905 ID=TCONS_00066905|Name=TCONS_00066905|organism=Clytia hemisphaerica|type=transcript|length=5394bp|location=Sequence derived from alignment at scaffold_462:773512..778905+ (Clytia hemisphaerica)
cgcaaattcgatttttccctgtcaaaaaatcgaatgtttggagcccgaaa
acctgggctcaaaacattcgaaaattcgCAAAATCTAGCATAGGCTAGCA
TTACGGTGCATGATGAGTCCTGAATCTGCGAACCCAGTTCAAAACAAGTG
TGACATGAGGTACTATAgtgattattattattatcattttgtCTACTCCC
AGTCAATTGAAGGAATCCCAGCCAAAACAGTGGATACATTTCTTGACaat
ctacaacaagaatctgcACGTAAAATCCAAGCTTCTTGGAGCGGTTGGAA
AACGAGAAAGGTTATGAGGGAAATTGCACCTCATTTAGTGAAAGAAAAGG
CTGCAATATTACTACAGCGCCAGGTAATGATTGCTTTCTTTGTACACCAG
TTGACGAGGGACAGTTTTGttttatataccgggtgcgccacaaaaaagtt
tctctctttaaaactaattttctcgaaatctaaaagttttaaaagaaccg
TTTTTATTTccttggaaagaagaaagataaacttaaatttcgaTGGGTCA
Attattgaattcgattcattagatcaaaagttatgctcaattgaataaaa
atgttactgtcggaaaatgctcaaaaacgttaaaaatcgacctatcaaat
taaacagaagcataattacatgatatgtcagtattttcgtttcagtcatt
aaaaatgataattagctgtctaaatgaccttttgttatttaaaggaaggt
tgaatttcaacgAAAGGaggaaaattcgtcgaaaaaggccaaataatctg
ttaaaattcataaaaatacatcaaatatgggttttgaggtatagatccag
ccttacatagactttatccagtctagaaccaaaaatttgaggaaaatttc
ggtaaaactaaattaaattgatttcgatgaagattttaaaccctttcgac
ccttcagtttcaaaatttatgtgttttgttactgaaaaatgctcttaatc
atgtaaaggctaatGCAATTGNaaaatttatgtgttttgttactgaaaaa
tgctcttaatcatgtaaaggctattgcaatagccaaatttaaagtaaaaa
tttgatatgtcgatttttaacgttttcgagcactttctgaaagtaacttt
tttattcaattgagcataacttttgatctaatgaatcaaatttaataaat
gacccatcaaaatttaagtccgtctttcttctttccaatgaaataggagt
gattcttttaaaatttttagatttcgagaaaattagtttcaaagagagaa
acttttttgtggcgcacccggtagtctCCTACATATTGAGATATTATCCA
AATTTCTAATAGTTCAATGCTACTCTGTCAGATGTGAATCAAGGACAATA
TTACCATAAgagcagtagcgtggtggcagcgGAGGTTTTcaaaggggcgc
cgaaatacAAAGGGTATAAAAAGACGCTTCTCattactaatttcggcgcc
cctttgctcttttacaccttagatatggttttcggccaaaaagagaGAGA
ATACTCAAAAGTTttcgtgctcgcttcgctcgctttatttaaaaaaaaat
ttacatttcatagggggcgccaaaatctaaatcttctaaaattgcctccc
cagtttgcccgaattttagtcgacccaccacgctactgataAGAGTAGAG
CATTCGACTACGATATACAAGGTCTTATGTTCAACCCCAATCCGGATACC
ATAGACTCGATAAAAGGTATTTTATGCTTGCTTCAATGCTTACTGCTCAG
CAACTAAAAAAGGTGTCAAGGAACGAGGGATAAGTTGgaaaatccaggga
aaggagtggcgtcTTCTTATACCTTTTGACAGTTAGGGTGAGGTGTTTTC
GGGTCGCTCTTGACTATGCTcacaaacttacttacttaaattTTCCAGAT
TCGGAGATGGTTGGAGAAGGTGCGAAAAGTAAAACAAGATGCTCGATTGG
ATATGATTCCTGATGGGTTGAACGATGAAAGAAgaatcgaactttcgaat
gtTCTGGTCAATATTCGAGAAAAATTCCCTGTATGTATAACTATCATTTA
TCGATTTAAGTTAACGCTGTTAATAATTTTAATTCGACCTTTTATAGAAA
GTAGCCTCCTATTGGCCACCCCTaggatgtaatttttttttttggcttgg
GGATGACAACTTTCAGAATTTGGACAAATCTTGTGATGGTTCTGATGGTA
GGAAACTGGTAGGATGTTAGAAACTTCAGGTGGTGGTTTAAGATGAGGTC
AATCAAAGCACCGTTTGAATTATCTAGATTCCTTTCAAGAAATCTGACTG
AACCTATAAcagggggggtcttgcagttactccttgacactatgtggagt
aactgcaattttggacattttctacagacaccaccacccttgcagttatt
ccatagtgtactaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNa
ctaactgattttaccctcaaaattggtgtataccacccccaaaaatgcca
aatttggcaattttttcactgaattcctcatttttgataccattttactg
tgtacgtcttattaacgacttttcaagagttaaatatctcaatcattttc
caagtttgttaaaatatctttcatgccttgatcgaagaaaaaattttgtg
atttttttttgacttttgaaaaaaatgttttgaatttttttgcttccgga
atttttaaaaacctaaagttttaagtgaaaaattgaaaaatgtgctcact
tagtacaccatatgctaccaaaatcgacaattttgggcttaggcaccacc
catgttgcagttagtccactggtggagtaactgttttcccaaattttggt
ttatataccaccacggtaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNGGCTTGGGGATGACAACTTTCAGAATTTGGATAAATCTTGTGATG
GTTCTGATGGTAGGAAACTGGTAGGATGTTAGAAACTTCAGGTGGTGGTT
TAAGATGAGGTTAATCAAAGCACCGTTTGAATTATCTAGATTCCTTTCAA
GAAATCTGACTGAACCTATAAAGCTACTTAGAAGCTTAAAAGCGGGGATG
TTGCTCAATATTGGTCGACTCCCTCGCAGCATGGAGGTacaaaaaaaaca
ggaaaatatgttaatataaccaagctcgccctacgattaaaaaagttacg
aggtTTGCATgatcataatctcatatatcgtgtatttttaatgagctctt
ttgtcaattggtgaaatcttattggcttatTTCAGTTTTAGAAATTATAT
GAGACCTCGATGGACATCgtccattgtttctgacatcgatgtaagaaaat
atttggactaaaaaaaggcctgtaaacttggcaattcttcatcaaatgac
aagatttttcaattAATGTTTTCTTCAATGTGAACTCAATTGCTTGATAT
tctcctccaaaattctccagtgactttttgtctaaaaattgatTCTGAAA
TCATGTTTGCTTTTATAAATAACTTTCCATTTTCTaccttaaaaaatata
ttttcgaaacaaaatttaacggataacgaaatggaacataaacttaTTTT
GTGGGGCTaagttttattaaattatcgtatattagaaggctaatATTTTC
AATACTGATagttagaatgttcagagcaaacttgagttctactaaaaagt
ctaatttcatcgggcgagcttagaactttttttttttatttctttttttt
ttNagttctactaaaaagtctaatttcatcgggcgagcttagaatttctt
ttaatacattttataaaagaaatcaaaagactttaaggaccaattaccga
caaattcaactcctgtttttctttatacctccatgctcgCAGAAAATAAC
CTTAGTAAATCCTgcttgaaatattttcattttaaagttaaGGTCATTCA
TAATTTTATCACTAAACCTTTCCTTACATTGCAACCATTTTCTTACAGAA
AGTTGATGTCAGCGACGAAGAACTTATACAAGGCCATCTTaaagtatgtt
tgaactctttttgtgtatttttctgATTTGTTTAGCTCAAGTTTATTTCC
AAAGAAGCTAAAGGAAATTCTGTGATTGTGAATCTTATCTATTTAATGGC
TATAAAGCGTTTTGATGAAttagttttaaattttgaaagcgCAAAGACAC
AAACTACGCTTTTTTAACGTCtctttcattacttttttctttcaagtATA
TTTAACAGAGCATAGACAAATATGATGTACTTCGGAACTGGCCTTTATGA
GAAGTTTACACAATTTGTCTAAATTTTGtaatgaaattttgtaaacaagG
AATCTCTTATTTCTAGGCCAATCAAATGCTCAATAACCACGTGATAGGGT
TACGATCAATGAGAAGACGAGATGACCATCGACGCGCTCTGATTGGTCAA
TTAACCATCCAATCAGAAACGTTATCGCGAATGCCAAATTTGAGCTCAGC
CAATGAAATGACGTTAGAGCAGCTGGCGTCACGTTCGACGCCCGTCATGG
TAGCGGCTCGTAAACAACACGTGGAATTTATAAACGATTTGAAAAGGCCC
TGGTGGGATAGGCTATCTGATGAATCGGCCGTTGAAGACCCTAACAGGCC
CACGGTGCTTGGGAGTCATGTAATAGACTATGAAAAGAATTTCTAAGATA
ATGTTTTCAATTTGAGTGAGACTGGCTTGTCGGTGAAGTTTGAGTGGAGC
TATTTAAAGGTAAGATTGTTTTCTCGTGTTTTGTATTTGCTTCAAATGTG
GATAGGATTGAAAAGAGCTCGAACGAACTGTTGGTGGGATgagatttttg
gcaaaaataccTGACAGTTTTTTGAGGGATTCTGAAATTATGGTCCTTCC
AATATATATCATCCGGGTGGAGTTTTATACTAGCACCTTTATTCATcgtt
ttgaaaagtgaaaaggaAAAGGCTTTACTTTAAAAGTCGTTAACGGTTAT
TCGAATTAAAATAGACGGGCCATACTTTTAAGCCATCAAAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066905-exon-scaffold_462-1491911889:773512..773884 | TCONS_00066905-exon-scaffold_462-1491911889:773512..773884 | Clytia hemisphaerica | exon |
| TCONS_00066905-exon-scaffold_462-1510915933:773512..773884 | TCONS_00066905-exon-scaffold_462-1510915933:773512..773884 | Clytia hemisphaerica | exon |
| TCONS_00066905-exon-scaffold_462-1575043694:773512..773884 | TCONS_00066905-exon-scaffold_462-1575043694:773512..773884 | Clytia hemisphaerica | exon |
| TCONS_00066905-exon-scaffold_462-1491911889:775460..775591 | TCONS_00066905-exon-scaffold_462-1491911889:775460..775591 | Clytia hemisphaerica | exon |
| TCONS_00066905-exon-scaffold_462-1510915933:775460..775591 | TCONS_00066905-exon-scaffold_462-1510915933:775460..775591 | Clytia hemisphaerica | exon |
| TCONS_00066905-exon-scaffold_462-1575043694:775460..775591 | TCONS_00066905-exon-scaffold_462-1575043694:775460..775591 | Clytia hemisphaerica | exon |
| TCONS_00066905-exon-scaffold_462-1491911889:777860..777904 | TCONS_00066905-exon-scaffold_462-1491911889:777860..777904 | Clytia hemisphaerica | exon |
| TCONS_00066905-exon-scaffold_462-1510915933:777860..777904 | TCONS_00066905-exon-scaffold_462-1510915933:777860..777904 | Clytia hemisphaerica | exon |
| TCONS_00066905-exon-scaffold_462-1575043694:777860..777904 | TCONS_00066905-exon-scaffold_462-1575043694:777860..777904 | Clytia hemisphaerica | exon |
| TCONS_00066905-exon-scaffold_462-1491911889:778228..778905 | TCONS_00066905-exon-scaffold_462-1491911889:778228..778905 | Clytia hemisphaerica | exon |
| TCONS_00066905-exon-scaffold_462-1510915933:778228..778905 | TCONS_00066905-exon-scaffold_462-1510915933:778228..778905 | Clytia hemisphaerica | exon |
| TCONS_00066905-exon-scaffold_462-1575043694:778228..778905 | TCONS_00066905-exon-scaffold_462-1575043694:778228..778905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:773512..778905 + |
Blast
BLAST of TCONS_00066905 vs. Swiss-Prot (Human)
Match: IQCB1 (IQ calmodulin-binding motif-containing protein 1 OS=Homo sapiens GN=IQCB1 PE=1 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.275e-17 Identity = 64/208 (30.77%), Postives = 101/208 (48.56%), Query Frame = 2
Query: 206 IEGIPAKTVDTFLDNLQQESARKIQASWSGWKTRKVMREIAPHLVKEKAAILLQRQIRRWLEKVRKVKQDARLDMIPDGLNDERRIELSNVLVNIREKF---PKVDVSDEELIQGHLKANQMLNNHVIGLXXXXXXXXXXXALIGQLTIQSETLSRMPNLSSANEMTLEQLASRSTPVMVAARKQHVEFINDLKRPWWDRLSDESAVE 820
+E + V+ ++++SA IQ W G++ RK + L++ KAA+ LQR ++L K RK K+ L D RR+EL + + + P DV EL H +A + L ++ +G R HR ALI Q++ E L + P+L A E SRS PV A++ H+ + ++ PWW +L +ES E
Sbjct: 371 LEIVHPGQVEKHYREMEEKSALIIQKHWRGYRERKNFHQQRQSLIEYKAAVTLQRAALKFLAKCRKKKKLFAPWRGLQELTDARRVELKKRVDDYVRRHLGSPMSDVVSREL---HAQAQERLQHYFMGRALEERAQQHREALIAQISTNVEQLMKAPSLKEAEGKEPELFLSRSRPVAAKAKQAHLTTLKHIQAPWWKKLGEESGDE 575
The following BLAST results are available for this feature:
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