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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066878 ID=TCONS_00066878|Name=TCONS_00066878|organism=Clytia hemisphaerica|type=transcript|length=1949bp
GTCAAAACAGGAGTTCGAATgaggtttttcaaaaataatatatGTCTCTG
ATTTCAAGTCGGTAATATAAAATGGCACCTCACACTTCATGTGATTCAAC
AATCGATGGATGCGATATAATGAACCCTAAAGATGTCGAGCAGAATCTAT
CATGCTACGCTGACAGTACTGAACACGAGACGACGTTACAATCGTTAAAT
CCAATCTCTCAAGAGGTGTCGGGTAATGATACAGACCCAGATAACGTTTC
ATCGAATTATTATTTCACGTCGGACGATGAAGGTTATTGCTGTAGTAACT
ATGATGCCGACGACGAGGACATTTACCGACAATCACCGAGAGACGAGGAA
AACAATAACCGAGTACCGAGTCTTGCCGAGGATGATGACGACGActcttt
attttgttttcgCATTAAATCCGACCATACCATTTACACAATAAATGATG
CTATGGAGATTTTAAAACAACGACCAAAATTAACCGATCGTTTGTATTGT
CAAGAAGATAGCGACGACTGTTTCCGAGAATCAGAGTACGACGTCATCGA
TACCGACGATTCTGATAATGCTGATATTGTTGAAGTGATCAATGGTACGA
CCAATAATCCGGATACTTCAAGAATCGAAATAAAAGTTCGAGCACATACA
TTAAACGATGAAGGACGTCTTATTGAAGTTAAAACTACTCCTGTTCGAGA
CAAAAATAAACTCAAAATCGGTAAAGTCAGATCGTTACCCGGTATCCGTT
TTCCAATCCGAAACGGGAAATCTAAATGTTATCGCTCAACATCAGAAATA
TCATTAGTTTCAGcaaaaagtcagcaaaaactCGATACAGTTTACGATGA
ActtattttaaaagaaagttacCTAACGACATGTACTACTCCAACAAAGT
CACACCGCTCGGAATCTTCTGATGCTGATTACCTTACAACAATAAATCGC
TGTTACAGCGCAGACAGTCAAATAGATACAAATATAGAAACTCAAACAGA
AGACACTGCACCTACCAAATTCTTTTCAATGCTTAAGTTGAatagcaaaa
aacgtaaaaaaactaTACAACGCTTAGAGTTTCAAACACAAGATCATTCT
TCTAAAGGACGTTTTCAAGTAACTACAGTTGACGAAGTTGCAACTccaga
aaatgaagtcaaatTTACACTTGGTGGAAAACACTCCTTACTAACATCAA
GTACAACAGATGAAAAACAATTAGTTAATGGCAGCTTGAAAATGCATAAT
CGTGATCTCTTTGAACATTGCTTTTTAAAATCATACGAAATCCTTTAAAT
TTCAACTGCCgattattttaaaacttttatgttATATTTTATCGAACAAT
ATATACGATATGTTGCTGGAACCTTCATTAATGTTTGCTGGTCAAAACTT
TTAATacaattatttctaaaaaaaagatttgtatATAATGTCAAATTTGT
TTACAAAATCGAAAGTCATTAAGAATCTTCGATCTGACAGTAAACTTTAA
CCCATGAACAAACAATAAGTTAAATCAAGCCAAGGTCCTACAATTTAACA
AATCTTACTTACCCTTTTTCAGTAGCTGGTCTATTGTAGAAAGGGCTCgg
tctttttattttaaaataaggCCTCAAGGCTTGAGGACgaaaatgtttgt
tttggaTAAAAGTTAatagtcaaaaatattttacatccATTAATTTTATT
AGTCAAAAACCataaaatctaattttaaaaacgttttattttatatattt
taatttaTCAATTTCCTTCTCGCCACACTAACTTTTATACCTTAACCAAA
CTTTGTACATAAATTTCTcatatattattttttagatacgccaattaaaa
ttaaaataacttaaaaatttcatgaaaaataaatactttCTTGAATTTGG
TTGGCCAACATACCTCCATctcctcgttgaaaagataattttaagcgaa Run BLAST on NCBI transcript from alignment at scaffold_462:482616..486119+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066878 ID=TCONS_00066878|Name=TCONS_00066878|organism=Clytia hemisphaerica|type=transcript|length=3504bp|location=Sequence derived from alignment at scaffold_462:482616..486119+ (Clytia hemisphaerica)
GTCAAAACAGGAGTTCGAATgaggtttttcaaaaataatatatGTCTCTG
ATTTCAAGTCGGTAATATAAAAGTAAGTTAgacctttctttttcttcatt
taagTTGCTGATTTAAGTGAAAAGTTAACTTAAAGATATTGGTTTAAACC
ATGGAGACTGGTGGCTTCGAGCAATGGTTTATCGTATTTCTTTCATCACA
GTAAACCCTTTACAACAATTTAGACAAGAAAGAGTTGCAAGCAGTGACAA
ACAACGAGAAAAAAATAGACATAAGACTCAGAGGAGCAGAGTGGACAGAC
AATATTAGAAACGAGAAAGCAAAGTAGATACACGGTGCGAGTCGAAAGAA
TAAGTGTAAGCGTATATTCGCGTTGGATTTGCCGATTAAAACGATTAAAT
AATGGGAAAACATGCTTATACGATCATAGCGCGTGAAAAAAACAAGGTTT
GAAGGAAAAAATGATATTAGTGTTATTGTAATGATTCTTAATCATAAACG
ATAATCTAAAGTTTTGACAAGCCGTTGAATTCTGTTTATTTAGATCATAG
TGAATCGCTTTAGAGGCAGATTTACTTAAtgaaaatatgagaaaaaaagG
AGCGACTATGGGACAGACTATCATTTTGACTGTGTCTTTATCGCTGTCCC
CTTTTTGTGTTTGCGCGTGAGGTGCTTTGAGGTGCTTTTGTTTATTGCTT
GCGCTACATGGtgtttttatgaccaaaatttgtatttttttatgaatggg
AAATTTTGCTTTTGACAAAGAGTGATTTGTTTGTAAGAAGAAAATttcac
atgatcaaaaaattgtttttgagacattgaatttgaatttgttgCTGTGG
tgattttgttttcttgatcaTGATAGATATGAGAAATTGTTGGAAAGAAG
AACTTGACTTATTTGTTGTACGcaaaaattccattgaaaaggGTATCTAC
TTAAACTTACTTTTCGTGTTATCCAGGCTTGATATTTAATACTAATTATG
GTCCACGcaatgaaattgaaagttgGGAACCAATgaatatagagtctaag
gaAGCGCGACCAAACatttttactttgcaaaaaaatggGCGTAGGCCCTG
CTAATAATggttttcttgaaaagaaaaagaacactAAAGTGACTTTATTC
AGCATTTAAATTATAACTCTCTCAAAGACAGTTTAAAAACACATAGTTAC
AGCAATCTGTAGTGTCTTTGCCAGGAAAGCTACattgtaataaaaaaaat
ttgtcgaGACAGGGTGTGTCCAAGCAGATGTTCAGTAGGATACGCCTCAG
TCCACCTTTAAAGGAAATACAATTGACCTTCTCTGAAATAGGCGAAAGAG
GAAAAATGAAGTTCGATTAGCAATATGCAAACAATATTTAAGCTAGCATC
CAGGATGGCTTTTAAAGGGCTGTAAAATGATCAAATGACATCATTAGGAA
GTCGTAAAATCGCATCCTGGAATATGAAATGTTATTTGCTAAACAGAAGG
CggtaattatttaaaaaatgtcaatataGGAGAACTGTTCATATCAGTCA
AGTATGCTTTTCTACTCAACAGTATTAagttcttttttatatcaaatttc
atgaattattttctttgttttttacaGTGGCACCTCACACTTCATGTGAT
TCAACAATCGATGGATGCGATATAATGAACCCTAAAGATGTCGAGCAGAA
TCTATCATGCTACGCTGACAGTACTGAACACGAGACGACGTTACAATCGT
TAAATCCAATCTCTCAAGAGGTGTCGGGTAATGATACAGACCCAGATAAC
GTTTCATCGAATTATTATTTCACGTCGGACGATGAAGGTTATTGCTGTAG
TAACTATGATGCCGACGACGAGGACATTTACCGACAATCACCGAGAGACG
AGGAAAACAATAACCGAGTACCGAGTCTTGCCGAGGATGATGACGACGAc
tctttattttgttttcgCATTAAATCCGACCATACCATTTACACAATAAA
TGATGCTATGGAGATTTTAAAACAACGACCAAAATTAACCGATCGTTTGT
ATTGTCAAGAAGATAGCGACGACTGTTTCCGAGAATCAGAGTACGACGTC
ATCGATACCGACGATTCTGATAATGCTGATATTGTTGAAGTGATCAATGG
TACGACCAATAATCCGGATACTTCAAGAATCGAAATAAAAGTTCGAGCAC
ATACATTAAACGATGAAGGACGTCTTATTGAAGTTAAAACTACTCCTGTT
CGAGACAAAAATAAACTCAAAATCGGTAAAGTCAGATCGTTACCCGGTAT
CCGTTTTCCAATCCGAAACGGGAAATCTAAATGTTATCGCTCAACATCAG
AAATATCATTAGTTTCAGcaaaaagtcagcaaaaactCGATACAGTTTAC
GATGAActtattttaaaagaaagttacCTAACGACATGTACTACTCCAAC
AAAGTCACACCGCTCGGAATCTTCTGATGCTGATTACCTTACAACAATAA
ATCGCTGTTACAGCGCAGACAGTCAAATAGATACAAATATAGAAACTCAA
ACAGAAGACACTGCACCTACCAAATTCTTTTCAATGCTTAAGTTGAatag
caaaaaacgtaaaaaaactaTACAACGCTTAGAGTTTCAAACACAAGATC
ATTCTTCTAAAGGACGTTTTCAAGTAACTACAGTTGACGAAGTTGCAACT
ccagaaaatgaagtcaaatTTACACTTGGTGGAAAACACTCCTTACTAAC
ATCAAGTACAACAGATGAAAAACAATTAGTTAATGGCAGCTTGAAAATGC
ATAATCGTGATCTCTTTGAACATTGCTTTTTAAAATCATACGAAATCCTT
TAAATTTCAACTGCCgattattttaaaacttttatgttATATTTTATCGA
ACAATATATACGATATGTTGCTGGAACCTTCATTAATGTTTGCTGGTCAA
AACTTTTAATacaattatttctaaaaaaaagatttgtatATAATGTCAAA
TTTGTTTACAAAATCGAAAGTCATTAAGAATCTTCGATCTGACAGTAAAC
TTTAACCCATGAACAAACAATAAGTTAAATCAAGCCAAGGTCCTACAATT
TAACAAATCTTACTTACCCTTTTTCAGTAGCTGGTCTATTGTAGAAAGGG
CTCggtctttttattttaaaataaggCCTCAAGGCTTGAGGACgaaaatg
tttgttttggaTAAAAGTTAatagtcaaaaatattttacatccATTAATT
TTATTAGTCAAAAACCataaaatctaattttaaaaacgttttattttata
tattttaatttaTCAATTTCCTTCTCGCCACACTAACTTTTATACCTTAA
CCAAACTTTGTACATAAATTTCTcatatattattttttagatacgccaat
taaaattaaaataacttaaaaatttcatgaaaaataaatactttCTTGAA
TTTGGTTGGCCAACATACCTCCATctcctcgttgaaaagataattttaag
cgaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066878-exon-scaffold_462-1491911889:482616..482687 | TCONS_00066878-exon-scaffold_462-1491911889:482616..482687 | Clytia hemisphaerica | exon |
| TCONS_00066878-exon-scaffold_462-1510915933:482616..482687 | TCONS_00066878-exon-scaffold_462-1510915933:482616..482687 | Clytia hemisphaerica | exon |
| TCONS_00066878-exon-scaffold_462-1575043694:482616..482687 | TCONS_00066878-exon-scaffold_462-1575043694:482616..482687 | Clytia hemisphaerica | exon |
| TCONS_00066878-exon-scaffold_462-1491911889:484243..486119 | TCONS_00066878-exon-scaffold_462-1491911889:484243..486119 | Clytia hemisphaerica | exon |
| TCONS_00066878-exon-scaffold_462-1510915933:484243..486119 | TCONS_00066878-exon-scaffold_462-1510915933:484243..486119 | Clytia hemisphaerica | exon |
| TCONS_00066878-exon-scaffold_462-1575043694:484243..486119 | TCONS_00066878-exon-scaffold_462-1575043694:484243..486119 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:482616..486119 + |
Blast
The following BLAST results are available for this feature:
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