|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066867 ID=TCONS_00066867|Name=TCONS_00066867|organism=Clytia hemisphaerica|type=transcript|length=3108bp
CAAAGAATGAATTacgaatgaaaaaaaatatttaaaagaaaCAACATAGA
AACACAACTGATAAAAATGGACGAAACACGTTTGACTTACAATGATTCTT
ACACAACTGACAAGGATGAACCTTTCACAGATGAGGAATTCATCCAGTCA
AAACGACAAAAAGCCTACCAACATCTTGGTCATTTCAACTCTGGTAGTCC
TGGATCTGCTGATGTATGGGCCAATCATCACCAACAACCCAATACTACTG
GAtttaattatcatcatcatATATCAACTGCTGTTGCTCCAAGAACCGAT
GATACGGAAACCCTTATTACTCCGAGGGATCATGACCCTGCTACCACCTC
TCCTGATCCTGCACCTACCAGTAGTTATCAAGTTACAGTCGTACCTCCAC
TGCTCCATTCTTATTCATCATTCAGCATGATCGACCCAACCTCAAGGACA
AATTCACGATGCCCTAAAATGGAATGGAAGACTCACGCACAGGATCCACT
TTACGCACCAAGTATACCGACCTACAATGAAACAAGTGGACCAAAGTTTG
ATATTCCTGAGGACATAACAATCAGAAATTTAGTACAACTTTACCTAACG
GATGACCTCCTTGACGAACTAGTACAAAACACTAATAAGTATGCTGCCCG
AACAAAAGAGTCGGAAGGAAACAAACCCTCTAGTAGAACAAAACAATGGA
GGCCTGTTACCAGATCCGAGATTCTTCAACATATAGCGCTTGGTGTACTT
ATGGGCATGCGCAGCCTACCGGGGATATCTGATTATTGGAGCAAGGATCC
TTTGTTTCATAACCCAGTCTTTGGTGCAGTAATGAGCCGAAACAGGTATC
AGCTGATCTCAAAATTCGTTCATTTTGCTGATGAGAATGGTCCCGTTACT
GAATCCACCAAAACGACCAAACTCCACAAGATCTTAGCCGTTTTAAACCA
TCTAAACCAACGGTTTAAAGATACCTATAATCCAACAAAGGTTTTAAACA
TTGGTGAATTTGCTTTAACGTCTGAACGAAGTCGATGCAAGGAGCCCGGG
TTTGAGCATAGTGGGAGCTTGAAATTTGTATCGCTACACGACGAAACGGG
TTACGTTCTAAACACTAGTATCCACGAAGGGAAACGTCAATTTGATCCAC
TTACAGAAACAATGACCAAGGTGGAGCCAGAACAAATCACATTACAACTT
GTTGGACCGTTTCTCAACAAAGGGCATCAACTTTACGTCAATGATGTCAC
TGTATCTTTAGCCAGAAACCTGATTGCAAATAACACCGGCATTTGTGGTG
AGATAGCTCCCAAACACATACAAACCACATTCGTAGACAATTTCACCGAA
CAAGATTTGAACAAGGGTGAAACGACGCATTTAACCAATAACAAGATGCT
GGCTTTACGATACAATCACCATAAAGAGAAAGACAAATTCTACTTGTCGA
CAGTACATGCGCCAGAGCTGTCAGCAGCTACTACAAAAAGAGATCGAAAT
GGAAATTGGGTATCCAGACAAAAACTCGTTTTAGATTACAATAAGAATTC
AGTATTAGCCGACAAACAGTATCAATCGATTCAACAATCATCGATGGTCC
GGAACTCTCACAAATGGACTACCAAAGTCGCTTACCATCTTTTTGAAATC
GCCTTCGTCAACGCACACGTTCTATACAGTAGCCAACCCAAAAAATCACC
AGTTTCTTACTTAGACTTTAAACTTTCTTTCGTTCGTCAAGTCTTAAGTG
ATTGCCCAAGATTCCTCACGATTATGGAGAACCCAACAGCACCGAATCCA
TCAAAATCTGGCGAAACACAGCATTTCTTGATGACGGTTCCTACAAAGAA
TCCTAAATACCCGTTCCCAAGTAAAAGATGTCAATTATGTCATAAGAAAG
GGAAACGTAGGGAGTCGAGATATCAATGTGATTCTTGTATTGGAAACCCA
GGGTTTTGCGTTGATCCTTGTTTCAAAGAACATCATCAGCAACGACAAAA
ACAACatgaacaacaacaacataaacaacaacaacaacaacaacaacaac
aacaacaacaacaacaacaacaacaacatcaacaGAACAATGACATCAAA
ACACTTGCTCCAGTGTTCGCTAAGGAACCTTTAGAAAAAAACAGCATTTT
AGAAGAATGATATATGGTTTTCCCATTACTGTATGTCTTGCGTTGCCCCG
GAGTGGTTAACCCTTCGTTACTAATACCTGAAGGACtagttttattgatt
tttttgtttgtgttttcaACTGCCTTCTTAGATATTTTATATAGtaaggt
gaaaataaaaaatgtagtgttttcggaatgcgggtgaagagaaagagctc
tcatgcggccagccggaaaaaaattttttttcgccatttttgataactta
agatcattgaaatagaactttaaagataactttaatgtacaaacagtatg
tatgaagtaagccctgaaaactaatgtatcaactactaacgaaaaAAACT
TAATTTATAAGCGGGAATATTTAGCGATttaaccaaacgacgtttgataa
tttgaacggtcaacttgattttctttatgattaaCCATAtaaacccatag
tctgcggccgggtcagaatttttttttttcactcggccggtttccggaaa
cactacattgtTTTATTTTCGCCTTGCTATTACTCTTTTGATCAAAAATT
TTAAGTACTTTTTTACTTTAGAAGATGACATAGAGGTGGACAAAACTATT
TCAGTTtatgaactttttttatttatttacttttgttACTGTGTGGTTAC
ATTTTCGACAACCAATATAGTTTTTGGTTTGTGCACTGGTGGTATGTGTG
GCCCGAAACTGCACTCCTAAAATTACACCACTTTTTTTACTCTTAAGTGA
ATTCGTATTTGGATGTCTTTTTATAAACTACCTTTTGTGATTTATGGTTt
attaccttaagagaagaaattttgtggAATGAACCCATTCGCCAATTTTA
GTGCAATGTggtggaatttattttggcgatttaatgaaatttctaaattt
ggcgagaattaattttggcgaacgagTTCAatattttagatgaaaaaaga
ggaaaaag Run BLAST on NCBI transcript from alignment at scaffold_462:284680..288515+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066867 ID=TCONS_00066867|Name=TCONS_00066867|organism=Clytia hemisphaerica|type=transcript|length=3836bp|location=Sequence derived from alignment at scaffold_462:284680..288515+ (Clytia hemisphaerica)
CAAAGAATGAATTacgaatgaaaaaaaatatttaaaagaaaCAACATAGA
AACACAACTGATAAAAATGGACGAAACACGTTTGACTTACAATGATTCTT
ACACAACTGACAAGGATGAACCTTTCACAGATGAGGAATTCATCCAGTCA
AAACGACAAAAAGCCTACCAACATCTTGGTCATTTCAACTCTGGTAGTCC
TGGATCTGCTGATGTATGGGCCAATCATCACCAACAACCCAATACTACTG
GAtttaattatcatcatcatATATCAACTGCTGGTAGTAGACCTTTATCG
AGTGGTAGTGGTCTACCTCTTATCACTCCCAGTCTTGTTCCTGTCAGTCT
TCATCAAGGTTCTTCCAGTCTTGTTCCCTCGACCATACCCTCTAATCTCG
TTCCGTCTGACGGTCATCAAGCAACTATCACAAGACCTCCTGGTCTTCCT
ACAAATCCAACAACTGTGATACCTAGTACCATCAGACCTAGTCTAGTTCC
CAACAGTCACTACACGTCTACACCTGTGCAAGGCTCCCATTCTTTTTCAG
TTGCTCCAAGAACCGATGATACGGAAACCCTTATTACTCCGAGGGATCAT
GACCCTGCTACCACCTCTCCTGATCCTGCACCTACCAGTAGTTATCAAGT
TACAGTCGTACCTCCACTGCTCCATTCTTATTCATCATTCAGCATGATCG
ACCCAACCTCAAGGACAAATTCACGATGCCCTAAAATGGAATGGAAGACT
CACGCACAGGATCCACTTTACGCACCAAGTATACCGACCTACAATGAAAC
AAGTGGACCAAAGTTTGATATTCCTGAGGACATAACAATCAGAAATTTAG
TACAACTTTACCTAACGGATGACCTCCTTGACGAACTAGTACAAAACACT
AATAAGTATGCTGCCCGAACAAAAGAGTCGGAAGGAAACAAACCCTCTAG
TAGAACAAAACAATGGAGGCCTGTTACCAGATCCGAGATTCTTCAACATA
TAGCGCTTGGTGTACTTATGGGCATGCGCAGCCTACCGGGGATATCTGAT
TATTGGAGCAAGGATCCTTTGTTTCATAACCCAGTCTTTGGTGCAGTAAT
GAGCCGAAACAGGTATAATTTCTTTAACTTTCTTGTTTCGTGAATGGTAT
TGAGGTTGGTTCAGTGTagtaattttatattttaggaATCTTTTATGGCA
TTTTCTGTCATTTCCACCATTCCCACTCACGCAAATGGCAGCTTTAACCT
TTTATAGTATTGTCCTCAAAGNCACCATTCTCTCTCACGCAAATGGCAGC
TTTAACCTTTTATAGTATTGTCCTCAAAGAAAACGGAATTAAACTAAAAA
GACTCTTGATCACCAGTTTGAGTGACGTTTTAGATACAGGCAAACACAAA
TCTTTCCATAGCTTGATCATCTTAGGCTAAATAAGATTCCGAGTTATTGA
GAGTCATCTGAAcgattgacattttttttagaaatttatttttctaaagt
aCTTTGGAAGCCTTGGTCTCTAGGCGagtttttcctcaaaaaatgtCATG
CGTTTTTATCTTTGTATCTTTAGGTATCAGCTGATCTCAAAATTCGTTCA
TTTTGCTGATGAGAATGGTCCCGTTACTGAATCCACCAAAACGACCAAAC
TCCACAAGATCTTAGCCGTTTTAAACCATCTAAACCAACGGTTTAAAGAT
ACCTATAATCCAACAAAGGTTTTAAACATTGGTGAATTTGCTTTAACGTC
TGAACGAAGTCGATGCAAGGAGCCCGGGTTTGAGCATAGTGGGAGCTTGA
AATTTGTATCGCTACACGACGAAACGGGTTACGTTCTAAACACTAGTATC
CACGAAGGGAAACGTCAATTTGATCCACTTACAGAAACAATGACCAAGGT
GGAGCCAGAACAAATCACATTACAACTTGTTGGACCGTTTCTCAACAAAG
GGCATCAACTTTACGTCAATGATGTCACTGTATCTTTAGCCAGAAACCTG
ATTGCAAATAACACCGGCATTTGTGGTGAGATAGCTCCCAAACACATACA
AACCACATTCGTAGACAATTTCACCGAACAAGATTTGAACAAGGGTGAAA
CGACGCATTTAACCAATAACAAGATGCTGGCTTTACGATACAATCACCAT
AAAGAGAAAGACAAATTCTACTTGTCGACAGTACATGCGCCAGAGCTGTC
AGCAGCTACTACAAAAAGAGATCGAAATGGAAATTGGGTATCCAGACAAA
AACTCGTTTTAGATTACAATAAGAATTCAGTATTAGCCGACAAACAGTAT
CAATCGATTCAACAATCATCGATGGTCCGGAACTCTCACAAATGGACTAC
CAAAGTCGCTTACCATCTTTTTGAAATCGCCTTCGTCAACGCACACGTTC
TATACAGTAGCCAACCCAAAAAATCACCAGTTTCTTACTTAGACTTTAAA
CTTTCTTTCGTTCGTCAAGTCTTAAGTGATTGCCCAAGATTCCTCACGAT
TATGGAGAACCCAACAGCACCGAATCCATCAAAATCTGGCGAAACACAGC
ATTTCTTGATGACGGTTCCTACAAAGAATCCTAAATACCCGTTCCCAAGT
AAAAGATGTCAATTATGTCATAAGAAAGGGAAACGTAGGGAGTCGAGATA
TCAATGTGATTCTTGTATTGGAAACCCAGGGTTTTGCGTTGATCCTTGTT
TCAAAGAACATCATCAGCAACGACAAAAACAACatgaacaacaacaacat
aaacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaaca
acaacatcaacaGAACAATGACATCAAAACACTTGCTCCAGTGTTCGCTA
AGGAACCTTTAGAAAAAAACAGCATTTTAGAAGAATGATATATGGTTTTC
CCATTACTGTATGTCTTGCGTTGCCCCGGAGTGGTTAACCCTTCGTTACT
AATACCTGAAGGACtagttttattgatttttttgtttgtgttttcaACTG
CCTTCTTAGATATTTTATATAGtaaggtgaaaataaaaaatgtagtgttt
tcggaatgcgggtgaagagaaagagctctcatgcggccagccggaaaaaa
attttttttcgccatttttgataacttaagatcattgaaatagaacttta
aagataactttaatgtacaaacagtatgtatgaagtaagccctgaaaact
aatgtatcaactactaacgaaaaAAACTTAATTTATAAGCGGGAATATTT
AGCGATttaaccaaacgacgtttgataatttgaacggtcaacttgatttt
ctttatgattaaCCATAtaaacccatagtctgcggccgggtcagaatttt
tttttttcactcggccggtttccggaaacactacattgtTTTATTTTCGC
CTTGCTATTACTCTTTTGATCAAAAATTTTAAGTACTTTTTTACTTTAGA
AGATGACATAGAGGTGGACAAAACTATTTCAGTTtatgaactttttttat
ttatttacttttgttACTGTGTGGTTACATTTTCGACAACCAATATAGTT
TTTGGTTTGTGCACTGGTGGTATGTGTGGCCCGAAACTGCACTCCTAAAA
TTACACCACTTTTTTTACTCTTAAGTGAATTCGTATTTGGATGTCTTTTT
ATAAACTACCTTTTGTGATTTATGGTTtattaccttaagagaagaaattt
tgtggAATGAACCCATTCGCCAATTTTAGTGCAATGTggtggaatttatt
ttggcgatttaatgaaatttctaaatttggcgagaattaattttggcgaa
cgagTTCAatattttagatgaaaaaagaggaaaaag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066867-exon-scaffold_462-1491911889:284680..284962 | TCONS_00066867-exon-scaffold_462-1491911889:284680..284962 | Clytia hemisphaerica | exon |
| TCONS_00066867-exon-scaffold_462-1510915933:284680..284962 | TCONS_00066867-exon-scaffold_462-1510915933:284680..284962 | Clytia hemisphaerica | exon |
| TCONS_00066867-exon-scaffold_462-1575043694:284680..284962 | TCONS_00066867-exon-scaffold_462-1575043694:284680..284962 | Clytia hemisphaerica | exon |
| TCONS_00066867-exon-scaffold_462-1491911889:285230..285791 | TCONS_00066867-exon-scaffold_462-1491911889:285230..285791 | Clytia hemisphaerica | exon |
| TCONS_00066867-exon-scaffold_462-1510915933:285230..285791 | TCONS_00066867-exon-scaffold_462-1510915933:285230..285791 | Clytia hemisphaerica | exon |
| TCONS_00066867-exon-scaffold_462-1575043694:285230..285791 | TCONS_00066867-exon-scaffold_462-1575043694:285230..285791 | Clytia hemisphaerica | exon |
| TCONS_00066867-exon-scaffold_462-1491911889:286253..288515 | TCONS_00066867-exon-scaffold_462-1491911889:286253..288515 | Clytia hemisphaerica | exon |
| TCONS_00066867-exon-scaffold_462-1510915933:286253..288515 | TCONS_00066867-exon-scaffold_462-1510915933:286253..288515 | Clytia hemisphaerica | exon |
| TCONS_00066867-exon-scaffold_462-1575043694:286253..288515 | TCONS_00066867-exon-scaffold_462-1575043694:286253..288515 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_462 | supercontig | scaffold_462:284680..288515 + |
Blast
BLAST of TCONS_00066867 vs. Swiss-Prot (Human)
Match: PGBD4 (PiggyBac transposable element-derived protein 4 OS=Homo sapiens GN=PGBD4 PE=2 SV=3) HSP 1 Score: 152.14 bits (383), Expect = 3.242e-38 Identity = 132/523 (25.24%), Postives = 235/523 (44.93%), Query Frame = 1
Query: 469 MEWKTHAQDPLYAPSIPTYNETSGPKFDIPEDITIRNLVQLYLTDDLLDELVQNTNKYAAR-TKESEGNKPSSRTKQWRPVTRSEILQHIALGVLMGMRSLPGISDYWSKDPLFHNPVFGAVMSRNRYQLISKFVHFADENG-PVTESTKTTKLHKILAVLNHLNQRFKDTYNPTKVLNIGEFALTSERSRCKE---PGFEHSGSLK-FVSLHDETGYVLNTSIHEGKRQFDPLTETMTKVEPEQITLQLVGPFLNKGHQLYVNDVTVS--LARNLIANNTGICGEIAPKHIQTTFVDNFTEQDLNKGETTHLTNNKMLALRYNHHKEKDKFYLSTVHAPELSAATTKRDRNGNWVSRQKLVLDYNKNSVLADKQYQSIQQSSMVRNSHK-WTTKVAYHLFEIAFVNAHVLYSSQPKKSPVSYLDFKLSFVRQVLSD--CPRFLTIMENPTAPNPSK---SGETQHFLMTVPTKNPKYPFPSKRCQLC----HKKGK--RRESRYQCDSCIGNPGFCVDPCFK 1977
M+W A P + T G K D+ + +L+ T++L+ ++ + TN AA + G K SR +W+ E+ A+ +L G+ P + +WS PL P +M+ R+ L+ + +HF + + +S L KI V + L +F Y P + + + E + + + P LK +V ++GYV N +H G L ++ ++ +I L LV L +G+ +++++ +S L R L N T G Q + N ++ + KG T +++AL++ KE LST H + +RNG R ++++DYN+N D Q + R HK W K +HL I +N+++L+ + +S+++F+L+ + ++L P + P + + + SG +HF ++P + K P+ RC++C K GK R+E+RY C C + CV PCF+
Sbjct: 73 MKWSARAMIPRQRYD---FTGTPGRKVDVSDITDPLQYFELFFTEELVSKITRETNAQAALLASKPPGPKGFSRMDKWKDTDNDELKVFFAVMLLQGIVQKPELEMFWSTRPLLDTPYLRQIMTGERFLLLFRCLHFVNNSSISAGQSKAQISLQKIKPVFDFLVNKFSTVYTPNRNIAVDESLMLFKGPLAMKQYLPTKRVRFGLKLYVLCESQSGYVWNALVHTGPGM--NLKDSADGLKSSRIVLTLVNDLLGQGYCVFLDNFNISPMLFRELHQNRTDAVGTARLNRKQ---IPNDLKKRIAKGTTVARFCGELMALKWCDGKEVT--MLSTFHNDTVIEVN---NRNGKKTKRPRVIVDYNENMGAVDSADQMLTSYPSERKRHKVWYKKFFHHLLHITVLNSYILFKKDNPEHTMSHINFRLALIERMLEKHHKPGQQHLRGRPCSDDVTPLRLSG--RHFPKSIPATSGKQN-PTGRCKICCSQYDKDGKKIRKETRYFCAEC--DVPLCVVPCFE 577
The following BLAST results are available for this feature:
|
