TCONS_00066863 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066863
Unique Name	TCONS_00066863
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	807

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_462:64285..69846+

transcript sequence

>TCONS_00066863 ID=TCONS_00066863|Name=TCONS_00066863|organism=Clytia hemisphaerica|type=transcript|length=807bp
TTCCCTTTTGAAATCTTCAGGCAGAAGAAAGCGAAGATCAAATGTGGGAA
TACCGTGATACCTTCTCACTTTTCGACAAACAAGGAGATGGAAAAATTGA
ATGTGGCGATATTGGAGATATCTTACGCGCTCTCGGATGCAACCCAACTC
AAGCCGAAGTCAAAAAAATCGTCGCCGACATCGACTCCTCAGGACAAAAG
CGAATCACCTTTGAAGAATTTATTCCAATCTTTCACACGATGAGCAAAAA
GAAAAGCTCGTGTGGTTTCGAAGCCTTCTCCGAAGGATTCAGGATTTTTG
ACAGAGACAACAACGGTATGGTCAGTGTGGCCGAAGTCAGACATTTATTG
ACCAGTTTAGgtgaaaaattaaattccagTGATGTCGATGCTTTAGTACA
AGGACTTGAAGATTCAAGTGGCATGATCAACTACGAAGAATTTGTTCGTG
GAGTAATGAACGCTTAAACACactacaaacaaacaaacatcaGAACTGCg
tccaaaaacaaaaacaacacaaCATCACGCAATCACCATAACAACTGATG
ATACGtcatcaatttcaaaatttagggTTCTTTTTGCGAAAAAAGCAAGA
AAGTTGGGATgagttttaaatttcaaatttaataattctatattattttt
taaaacgaaatcttacaatatttttgtttgaaatttttgtaccATATTAA
ACTTGGGGaggaactttctatttttgtaaaataatatttttcttaattat
actatattatattttccaaagaaaaacaaaaacatttagtACTCTTGTCG
TTctata

Run BLAST on NCBI

transcript from alignment at scaffold_462:64285..69846+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066863 ID=TCONS_00066863|Name=TCONS_00066863|organism=Clytia hemisphaerica|type=transcript|length=5562bp|location=Sequence derived from alignment at scaffold_462:64285..69846+ (Clytia hemisphaerica)
TTCCCTTTTGAAATCTTCAGGCAGAAGAAAGCGAAGATCAAATGTGGGGT
AAGATTTCTTGTAAATATTTGTGAAGTATGATTGGTCTAATGTAGGGAAG
GAAATTGGGATAAATAGGATGGCAATTTTAAGCCCTGTTTTTAATAGTAG
TTACAGTAATGGATTATCTTTCCAAAGTCGAATAACTTATTTTATCAGTG
GTAAAATAACACCCCCTAATTTTAATCATAATAATATTTATTACttacaa
tttttataaattaaaaCATGTTCATGGCCCTTGTAGATTTATACTTGTTC
AATTTTTTGTACACCGTCGAAATATTTATCTGCTTAAAGAATCTATGAAA
TGGTTTTATTGGTTAACACGTTGGTAACTTTTTATGTAAGCCCtttgaat
aataaaatttacgtgctttttttgtgaattatTTTGTTACGTGTATGTTA
TCTCACAAACCATTTTAATTTAACACTAAATCGATTTATGCAAAAATTAT
AGTAATTTTATTGCaccaattcaaaaaattcatgatagcTTGACCTCACT
TAAAATCAACGAGCCATTAGTCGGTCACTcctctttttgaaaaacaacct
ttccattgCAAAGATTCGCAGAACTTTTAAATCCTTTGAATGTTTAACGA
AGATAATTTTCATCGAGTGTCCTAAACACATGGTCTGCTAAATACATTTT
GAAtgcgcaaaaaaaaacttttttatcatCAAAGTATTTTATGCAAGCCT
CCTAACATTCAAAACATTGTCACTCCCCTTTCTTAattttacaaatatta
tttCCGCCATCTTTAATATCTCGTCATTAGGAAATCATTAACAGATCCTT
TAATTTCCATAATTAACAAGAGAAGAGCATAACATTTTTCATGAATGATA
ATAATGACCAGAAAGCTCGGAAAGCTTACCTCCTTAATGTAGTATATGAA
AAAACTTCCGCTgctttttgaaatgaaaaagctTTTTCATTCCTCACCCT
AGCATGAGAACTTGAGCCTactccattgagtttaaagggTTAAAAGGATT
CTTCAAGGATTCTTTGGTAACCCAGTGATAGGTTTtatttcaatctggcg
tttgtgtgaaagAGCTTTCTCACCTGGGACGGGTTTCGACCAATATTTCT
CCAGATGAAATCTCAACGGGTCTCTTTTACAGGGGTGTTAAAGgtgagtg
atatcgtttgcttactcatcaattttaattcacaagctttttcacattgg
attgacacagatattgagcaagattggtcagaaagaagaaaagaaaaaca
tattttgcttatatcagcataatataacaatagcaagacactgtccagat
atgaaatatgtgtctggtatgaaacgggaacacttatgtaaaaataaaac
ctttaaataactGAATACAAAGACATCGAAAAACCTATCAaaccattttg
tttttatttccatTTTAGAATACCGTGATACCTTCTCACTTTTCGACAAA
CAAGGAGATGGAAAAATTGAATGTGGCGATATTGGAGATATCTTACGCGC
TCTCGGATGCAACCCAACTCAAGCCGAAGTCAAAAAAATCGTCGCCGACA
TCGACTCCTCAGGTATCTTGAATTCGACATTTTAGCGGTAATTTTTAAGT
ATAGACCTATAACCTTATCTTCATAATTTGGGATTGTATTTAAGTTTAAC
AGGACCagatgatacacgtttttttataagaatatacatTATAAGAATAT
CACAATCATGGAATTCGGCAacagaacctaagaatgccatttttagagca
tttgtcaattatccccaagtaactttcacaaaaaatgccatttgtATTGT
GTGTGCGTTAATATTTGTGGTCAGTATTTTAACGTCATTACCCTCAGATT
CAAAATCATAATTTAAGTTatttaataaattttgattttatgaaaataaa
atgaagtcaCTTCTGTGTTTACAATTTTTGCAGAAATCATTCAGGGAGGA
TCAACGATAATTTAAGTTAAAAACTATTATTTGGTGTGTATTGCATGTTG
TATTGCATGAGTCAACCAAAACGTTCTTGCATTTGTGCTATTTGGATCAA
GAATGACTTGTGATGCGAATGCTGCTAAGAAATAATCCAAGCAATTGTAA
AGCCAAATCttttaatcaataaaaagattaaaataCCATAGGGATTGATT
GGAGGTCAAATATTTGATGGCTACCCCGGTAAATAGAATGCGTAGTTACA
CAGTTTTTGTTTAGTCGTAGCCTAAAGGGAACAACTATAACGATAGTGAC
TTAACTATGGACAAAACCTTACGACCTTACACATTATagtgacacccctg
tctcgttgACATTGTGAGAATCGTTTAGTTACTGGGGATGAATAAGCTAA
ATTCCAAACGAGTAGAATCTCTCACATTTGATTCAAATACCAACTGTTTA
CCTTCACTCGTGATAGCTTAAAATCCAAGTGGGATGCAATAcccttgaat
ttttttcctaaTAAGAATTCAATCAAATCAACACTCAGGGCTCACTTACA
ATGAGTTTAGGCAGGGTGGTCAAAATATCACATATCGATGATCTATCGTT
TTCCTCATAGGACAAAAGCGAATCACCTTTGAAGAATTTATTCCAATCTT
TCACACGATGAGCAAAAAGAAAAGCTCGTGTGGTTTCGAAGCCTTCTCCG
AAGGATTCAGGATTTTTGACAGAGACAACAACGGTATGGTCAGTGTGGCC
GAAGTCAGACATTTATTGACCAGTTTAGGTAAGTCGTCTCCTGCCCAGGC
TCCTAAAATACCTTATTTGCTTTTCATAATAACTCACATTAGTTATAaac
acttttttgcaaagtaaagATTTTattgcgcctccttagactctatattc
GTTGTCCCCCCAATTTCATGGCGTGACCCTGTATTAGTTATAAATACACT
TACAGATCAAGTTCTAGGGTGTTGTGGCTGCTTCAGATGCTGTTTTAAAT
CAATAGCTGCTGCCTAAGTTTGGAAAATTCAAATTCTGATGGTTTTCCTG
TTTAAAAAGTGAATATGATTCTATCTGCAAATTATAGACAAAGTAATTAC
TTTTGGAGTATCTACACTTCATTAATTGTatcttttgattattttttcag
gtgaaaaattaaattccagTGATGTCGATGCTTTAGTACAAGGACTTGAA
GATTCAAGTGGCATGATCAACTACGAAGGTTTGTACCCATACTCACAATT
CAAAATTCATGCATGTTTCTTGGGGGAAAGTCATGATGCTTGCTATATGA
ATCTATACTGATATCTTCCTCTTTAAGGCCTTAGGGATGGAcgtaaaatc
tttatttttgaaaggtATTAAAAGGACAAATACTTTCCATAGAGAGTATT
TTTAGGTATCCCTACAAAGGTCATGTCACgctcttgaaaaaatttccgcC
AAAACTTGGTTGAGTTCTCAACGCAAGAAATTCTACTATGAAGTTTGATA
AGGTTATCCCTTTAAAATGGCTTAAGATGGGGATCAAAATTAATTTGCTT
TATTCACAGATAGTCTAAACATTACTATTCAAAAGAAAGATCTTATATCA
AAATATTGATTCTAATAACAGATTTGACTATGCTAACTATGACAGtggtc
aaaacttttgaaatcacaCAGTCAAAAAGCTCTTAGTCAACAGAGAGGCG
TTCAAGTTAAATTTTGTTAGGACCAATCTTTCGCCGGTGGAAAAATCGAC
ATTTAATTCAATGAATTCGTAGCTAATTTAAATACACATCAAATACCACC
TACCATATAAAGCCAAGGAGATCCCAGCCAAATTGGAAAGTTCGTCCCCA
ATGATCAGATACTCTATTATTTTATTACCCGGTGGATAAGTGGTTTCAAC
CCCATTGTGAAGGGGGCGGTAAAGTTATAAAGTTGAATCCCGCCCGTCTT
CAATTACTCCAATAGAAACTTAAAACCCCTTCAAACAAATTGGGATTTCT
AATTATACTGATATGTGGCTCATGGGCTTGAAAAACTCTCGCCAGGACAC
CGAGACAGGATTGTAGAGAAagaaagttagatttttttctctcaatatTT
CAAGtctgaaaattagatttttcaagaGACGGCAATTAGATGTGACTTAG
TTGATAATAGGGTCTGCATTTTTCTCTTTCAGAATTTGTTCGTGGAGTAA
TGAACGCTTAAACACactacaaacaaacaaacatcaGAACTGCgtccaaa
aacaaaaacaacacaaCATCACGCAATCACCATAACAACTGATGATACGt
catcaatttcaaaatttagggTTCTTTTTGCGAAAAAAGCAAGAAAGTTG
GGATgagttttaaatttcaaatttaataattctatattattttttaaaac
gaaatcttacaatatttttgtttgaaatttttgtaccATATTAAACTTGG
GGaggaactttctatttttgtaaaataatatttttcttaattatactata
ttatattttccaaagaaaaacaaaaacatttagtACTNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNATAAAGCCAAGGAGATCCCAGCCAAATTGGAAA
GTTCGTCCCCAATGATCAGATACTCTATTATTTTATTACCCGGTGGATAA
GTGGTTTCAACCCCATTGTGAAGGGGGCGGTAAAGTTATAAAGTTGAATC
CCGCCCGTCTTCAATTACTCCAATAGAAACTTAAAACCCCTTCAAACAAA
TTGGGATTTCTAATTATACTGATATGTGGCTCATGGGCTTGAAAAACTCT
CGCCAGGACACCGAGACAGGATTGTAGAGAAagaaagttagatttttttc
tctcaatatTTCAAGtctgaaaattagatttttcaagaGACGGCAATTAG
ATGTGACTTAGTTGATAATAGGGTCTGCATTTTTCTCTTTCAGAATTTGT
TCGTGGAGTAATGAACGCTTAAACACactacaaacaaacaaacatcaGAA
CTGCgtccaaaaacaaaaacaacacaaCATCACGCAATCACCATAACAAC
TGATGATACGtcatcaatttcaaaatttagggTTCTTTTTGCGAAAAAAG
CAAGAAAGTTGGGATgagttttaaatttcaaatttaataattctatatta
ttttttaaaacgaaatcttacaatatttttgtttgaaatttttgtaccAT
ATTAAACTTGGGGaggaactttctatttttgtaaaataatatttttctta
attatactatattatattttccaaagaaaaacaaaaacatttagtACTCT
TGTCGTTctata

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041815	XLOC_041815	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_462	supercontig	scaffold_462:64285..69846 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
112.748	114.792	85.4288	52.332	42.6382	5.37738	20.759	9.16903e-06	70.4672	44.1795	9.75299	17.2719	256.541	210.119	101.244	95.8618	95.4593	120.12	483.323	275.496	20.6805	27.4792	70.6538	47.3883	0	0	37.8801	42.4148	99.0344	86.6203

Blast

[Close]

BLAST of TCONS_00066863 vs. Swiss-Prot (Human)
Match: MYL1 (Myosin light chain 1/3, skeletal muscle isoform OS=Homo sapiens GN=MYL1 PE=2 SV=3)

HSP 1 Score: 146.747 bits (369), Expect = 1.362e-42
Identity = 68/151 (45.03%), Postives = 103/151 (68.21%), Query Frame = 3

Query:   15 LQAEESEDQMWEYRDTFSLFDKQGDGKIECGDIGDILRALGCNPTQAEVKKIVADIDSS--GQKRITFEEFIPIFHTMSKKKSSCGFEAFSEGFRIFDRDNNGMVSVAEVRHLLTSLGEKLNSSDVDALVQGLEDSSGMINYEEFVRGVMN 461
            ++ E S++Q  E+++ F LFD+ GD KI    +GD+LRALG NPT AEV+K++ +  +     K+I FE+F+P+   +S  K    +E F EG R+FD++ NG V  AE+RH+L +LGEK+   +V+AL+ G EDS+G INYE FV+ +M+
Sbjct:   43 IKIEFSKEQQDEFKEAFLLFDRTGDSKITLSQVGDVLRALGTNPTNAEVRKVLGNPSNEELNAKKIEFEQFLPMMQAISNNKDQATYEDFVEGLRVFDKEGNGTVMGAELRHVLATLGEKMKEEEVEALMAGQEDSNGCINYEAFVKHIMS 193

The following BLAST results are available for this feature:

BLAST of TCONS_00066863 vs. Swiss-Prot (Human)

BLAST of TCONS_00066863 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MYL1	1.362e-42	45.03	Myosin light chain 1/3, skeletal muscle isoform OS...	[more]

You are here

TCONS_00066863 (transcript) - C. hemisphaerica