TCONS_00066857 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066857
Unique NameTCONS_00066857
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length349

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066857 ID=TCONS_00066857|Name=TCONS_00066857|organism=Clytia hemisphaerica|type=transcript|length=349bp
AGGAAACTTCGTAAGTtcattattcaatttttattcaattctGTTTTGGA
GACAAAAAGCGATTGTCAAATGGTCAAAGACGTCAACACCTTTCATTAAC
GTCACAATCCAGGGATTCGCCATTCAGATCCCTGCTCCTTCTAATCATCC
ATCAGTTCATAGATAGGCGAGCAGACTGGTCTTGGACCCCGTGAAACCTA
TCGAAAGGCTGTCTTAACCTCCTACCTTACTGAGCTATCCACAagcgtaa
aatatcgactctatcatAAAAACCTTCCCCCCTTTCTTAGCGTCATGATT
TTACACAaattaacaagaaaaaaaatcgtaGTCTTGTGTTTTttgtcct
Run BLAST on NCBI

transcript from alignment at scaffold_462:54059..54407+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066857 ID=TCONS_00066857|Name=TCONS_00066857|organism=Clytia hemisphaerica|type=transcript|length=349bp|location=Sequence derived from alignment at scaffold_462:54059..54407+ (Clytia hemisphaerica)
AGGAAACTTCGTAAGTtcattattcaatttttattcaattctGTTTTGGA
GACAAAAAGCGATTGTCAAATGGTCAAAGACGTCAACACCTTTCATTAAC
GTCACAATCCAGGGATTCGCCATTCAGATCCCTGCTCCTTCTAATCATCC
ATCAGTTCATAGATAGGCGAGCAGACTGGTCTTGGACCCCGTGAAACCTA
TCGAAAGGCTGTCTTAACCTCCTACCTTACTGAGCTATCCACAagcgtaa
aatatcgactctatcatAAAAACCTTCCCCCCTTTCTTAGCGTCATGATT
TTACACAaattaacaagaaaaaaaatcgtaGTCTTGTGTTTTttgtcct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041814XLOC_041814Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066857-exon-scaffold_462-1491911889:54059..54407TCONS_00066857-exon-scaffold_462-1491911889:54059..54407Clytia hemisphaericaexon
TCONS_00066857-exon-scaffold_462-1510915933:54059..54407TCONS_00066857-exon-scaffold_462-1510915933:54059..54407Clytia hemisphaericaexon
TCONS_00066857-exon-scaffold_462-1575043694:54059..54407TCONS_00066857-exon-scaffold_462-1575043694:54059..54407Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_462supercontigscaffold_462:54059..54407 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.760236	0.988467	1.72156	4.21069	4.78436	2.16038	5.21282	4.57517	0.854182	2.6451	2.05392	0.843855	2.69658	5.60085	3.4535	3.08844	2.09259	3.31475	0	0.563779	0.490026	0.717053	0.581114	0.528317	2.99285	1.45693	4.86469	5.19173	6.18789	4.58507
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066857 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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