TCONS_00066855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066855
Unique NameTCONS_00066855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066855 ID=TCONS_00066855|Name=TCONS_00066855|organism=Clytia hemisphaerica|type=transcript|length=757bp
ACATTGACGAGCCGCTTACACCTTTTCATTTACTTTATGGCAGAAACATT
TTATCGAAAGCGAAGTTAAACAAAACTCGACACACTTTTCAAACACAAGA
AACGTTTAAAACATATTTCTTCTTTACTTGACCATTTTTGTTCGTTTTCC
AACTTGTTACCTCGGTGATCTCAAACAATTCAATTTGCACCGAAAACAAA
ATTCATCTATAAAACAGGACATTTCAGTCGGGGACATCGTGCTTTTAAAA
GAAGATCTCCTTCCACGCAAACGCTGGAGAATGGGAAAAGTGAAAGAATT
GGTCATTGGACGTGATGGATTCGTTAGAGGTGCGAAGCTGCAGACAACAT
CGAAAGAAGGACGCAGAACAACATGCAGCCGCCCATTGCAAAGATTAGTA
CCTTTTATCTCGGACTCTTTGACTCAGCCCTTGCCAGAACCTGAAAATAA
GTGCGCACCCAGCGAAATCAAGCTTGTCAGTAGTAATCTTAGATCTAAAC
GTAAAGCTGCCGCAGATGGACAATTGAAACGANCCAGAACCTGAAATTAA
GTGCGCACCCAGCGAAATCAAGCTTGTCAGTAGTAATCTTAGATCTAAAC
GTAAAGCTGCCGCAGATGGACAATTGGAACGAAgacttattgaaaaattt
gggtAAACAAATTTTAGGGGGagtgtaaaatatattacataatttttcat
aattagcatatttcgcataattatcttttatcttttctttctttgtatat
ttttatt
Run BLAST on NCBI

transcript from alignment at scaffold_461:58159..58915

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066855 ID=TCONS_00066855|Name=TCONS_00066855|organism=Clytia hemisphaerica|type=transcript|length=757bp|location=Sequence derived from alignment at scaffold_461:58159..58915 (Clytia hemisphaerica)
aataaaaatatacaaagaaagaaaagataaaagataattatgcgaaatat
gctaattatgaaaaattatgtaatatattttacactCCCCCTAAAATTTG
TTTacccaaatttttcaataagtcTTCGTTCCAATTGTCCATCTGCGGCA
GCTTTACGTTTAGATCTAAGATTACTACTGACAAGCTTGATTTCGCTGGG
TGCGCACTTAATTTCAGGTTCTGGNTCGTTTCAATTGTCCATCTGCGGCA
GCTTTACGTTTAGATCTAAGATTACTACTGACAAGCTTGATTTCGCTGGG
TGCGCACTTATTTTCAGGTTCTGGCAAGGGCTGAGTCAAAGAGTCCGAGA
TAAAAGGTACTAATCTTTGCAATGGGCGGCTGCATGTTGTTCTGCGTCCT
TCTTTCGATGTTGTCTGCAGCTTCGCACCTCTAACGAATCCATCACGTCC
AATGACCAATTCTTTCACTTTTCCCATTCTCCAGCGTTTGCGTGGAAGGA
GATCTTCTTTTAAAAGCACGATGTCCCCGACTGAAATGTCCTGTTTTATA
GATGAATTTTGTTTTCGGTGCAAATTGAATTGTTTGAGATCACCGAGGTA
ACAAGTTGGAAAACGAACAAAAATGGTCAAGTAAAGAAGAAATATGTTTT
AAACGTTTCTTGTGTTTGAAAAGTGTGTCGAGTTTTGTTTAACTTCGCTT
TCGATAAAATGTTTCTGCCATAAAGTAAATGAAAAGGTGTAAGCGGCTCG
TCAATGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041813XLOC_041813Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066855-exon-scaffold_461-1491911889:58159..58915TCONS_00066855-exon-scaffold_461-1491911889:58159..58915Clytia hemisphaericaexon
TCONS_00066855-exon-scaffold_461-1510915933:58159..58915TCONS_00066855-exon-scaffold_461-1510915933:58159..58915Clytia hemisphaericaexon
TCONS_00066855-exon-scaffold_461-1575043694:58159..58915TCONS_00066855-exon-scaffold_461-1575043694:58159..58915Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_461supercontigscaffold_461:58159..58915 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.194221	0.126264	0	0	70.4273	51.2382	6.64348	7.17683	0.998773	2.86133	0.655907	0.619961	0.716697	0.715439	0	0.039451	0.185413	0.05607	1.47625	1.42838	0.0625947	0.109501	0.0742301	0.0674859	0.523233	0.930526	0	0	0.287427	0.219632
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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