TCONS_00066840 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066840
Unique NameTCONS_00066840
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length572

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066840 ID=TCONS_00066840|Name=TCONS_00066840|organism=Clytia hemisphaerica|type=transcript|length=572bp
CAAGAAGAGAAAATCATCGGTTGGAAATTTAGTTCCCATACTTTTTACAC
CTGATGCAGTTGAAGCAATCAAAGCACTAGAAAAACCCCGAGCGTTTGCA
GGtatcactgaaaaaaattcatatttgTTTCCAAGAGGAGAGATGTACGT
ACGTGGATGGGATGCCTTGCAAGGAATTGCCAAAAAGATTGAAGGGTTGA
ATAAACCAAAACTGCTTACTCCTAGCAGAACAAGAAAGTATTTGTATACT
CTGTTGCAGCTCCTCGATATGAATGACGCTGAATTAACATGGATTACTAA
TCATATGGGGCATACTAAAGACATCCATTTGACCTGGTACCGCAAGGAAG
ATGCCACCTTGGAATTAACAAAGGTAGCCAAAGTGTTGTATGCAGTTGAT
AGAGGAGACAATTCAAAGAATATGCGCATAGATGACCTAGGAACAGAACA
TGATTTAGAAGAACCTAAAGAAACCCGGATCAAGCAAAAGAGAGGTGTTG
TAGATGTTTCAACTTCTATTCGAATTATCAGCGTAGAactttataaaaag
taaaagttCTTTGATACGTATT
Run BLAST on NCBI

protein sequence of TCONS_00066840-protein

>TCONS_00066840-protein ID=TCONS_00066840-protein|Name=TCONS_00066840-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
KKRKSSVGNLVPILFTPDAVEAIKALEKPRAFAGITEKNSYLFPRGEMYV
RGWDALQGIAKKIEGLNKPKLLTPSRTRKYLYTLLQLLDMNDAELTWITN
HMGHTKDIHLTWYRKEDATLELTKVAKVLYAVDRGDNSKNMRIDDLGTEH
DLEEPKETRIKQKRGVVDVSTSIRIISVELYKK
Run BLAST on NCBI

transcript from alignment at scaffold_460:23190..23761

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066840 ID=TCONS_00066840|Name=TCONS_00066840|organism=Clytia hemisphaerica|type=transcript|length=572bp|location=Sequence derived from alignment at scaffold_460:23190..23761 (Clytia hemisphaerica)
AATACGTATCAAAGaacttttactttttataaagtTCTACGCTGATAATT
CGAATAGAAGTTGAAACATCTACAACACCTCTCTTTTGCTTGATCCGGGT
TTCTTTAGGTTCTTCTAAATCATGTTCTGTTCCTAGGTCATCTATGCGCA
TATTCTTTGAATTGTCTCCTCTATCAACTGCATACAACACTTTGGCTACC
TTTGTTAATTCCAAGGTGGCATCTTCCTTGCGGTACCAGGTCAAATGGAT
GTCTTTAGTATGCCCCATATGATTAGTAATCCATGTTAATTCAGCGTCAT
TCATATCGAGGAGCTGCAACAGAGTATACAAATACTTTCTTGTTCTGCTA
GGAGTAAGCAGTTTTGGTTTATTCAACCCTTCAATCTTTTTGGCAATTCC
TTGCAAGGCATCCCATCCACGTACGTACATCTCTCCTCTTGGAAAcaaat
atgaatttttttcagtgataCCTGCAAACGCTCGGGGTTTTTCTAGTGCT
TTGATTGCTTCAACTGCATCAGGTGTAAAAAGTATGGGAACTAAATTTCC
AACCGATGATTTTCTCTTCTTG

Coding sequence (CDS) from alignment at scaffold_460:23190..23761

>TCONS_00066840 ID=TCONS_00066840|Name=TCONS_00066840|organism=Clytia hemisphaerica|type=CDS|length=552bp|location=Sequence derived from alignment at scaffold_460:23190..23761 (Clytia hemisphaerica)
ttactttttataaagtTCTACGCTGATAATTCGAATAGAAGTTGAAACAT
CTACAACACCTCTCTTTTGCTTGATCCGGGTTTCTTTAGGTTCTTCTAAA
TCATGTTCTGTTCCTAGGTCATCTATGCGCATATTCTTTGAATTGTCTCC
TCTATCAACTGCATACAACACTTTGGCTACCTTTGTTAATTCCAAGGTGG
CATCTTCCTTGCGGTACCAGGTCAAATGGATGTCTTTAGTATGCCCCATA
TGATTAGTAATCCATGTTAATTCAGCGTCATTCATATCGAGGAGCTGCAA
CAGAGTATACAAATACTTTCTTGTTCTGCTAGGAGTAAGCAGTTTTGGTT
TATTCAACCCTTCAATCTTTTTGGCAATTCCTTGCAAGGCATCCCATCCA
CGTACGTACATCTCTCCTCTTGGAAAcaaatatgaatttttttcagtgat
aCCTGCAAACGCTCGGGGTTTTTCTAGTGCTTTGATTGCTTCAACTGCAT
CAGGTGTAAAAAGTATGGGAACTAAATTTCCAACCGATGATTTTCTCTTC
TT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041801XLOC_041801Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066840-proteinTCONS_00066840-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066840-exon-scaffold_460-1491911889:23190..23761TCONS_00066840-exon-scaffold_460-1491911889:23190..23761Clytia hemisphaericaexon
TCONS_00066840-exon-scaffold_460-1510915933:23190..23761TCONS_00066840-exon-scaffold_460-1510915933:23190..23761Clytia hemisphaericaexon
TCONS_00066840-exon-scaffold_460-1575043694:23190..23761TCONS_00066840-exon-scaffold_460-1575043694:23190..23761Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_460supercontigscaffold_460:23190..23761 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.293204	0.939108	0.11066	0.108264	2.76782	1.45811	4.14657	3.05852	3.73867	5.10076	3.41139	3.29207	3.64002	3.71269	5.68263	6.90859	7.70376	6.83634	6.64923	6.60799	5.4798	4.44048	3.4347	4.82423	1.78387	1.68571	3.26294	2.14037	1.90136	1.47152
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013762Integrase-like_cat
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006310DNA recombination
GO:0015074DNA integration
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0006310 DNA recombination
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066840 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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