TCONS_00066823 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066823
Unique NameTCONS_00066823
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length365

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066823 ID=TCONS_00066823|Name=TCONS_00066823|organism=Clytia hemisphaerica|type=transcript|length=365bp
atcggctaaaggcggcaaatctctggacaaaggaaatatagcttattaag
catcctctataaggagcacgaatccgttagtggatgccagcagcctagct
TTGACGAGCCAANGTCTAGTTGCCGAATGAGGCAGTCTAATTGTTTGGAA
CCGTTCAGGTGAACAACTTCAGTGGCAGCCATCTTGAATCGGGATTACCT
TCCTCTAAGCTAATTCAAACTAACTACGCTACGCGGAAACTTTATCTGTC
TGACTTTTCGGATTCAGTGGAACGCGTTCCATGTttctttggagaaaaaa
attatactttaaGCTATACGGGGGCAAAAGTCCCCCAGGGGGAAGGTAGG
TGATAACTACTATCC
Run BLAST on NCBI

transcript from alignment at scaffold_46:224401..224765

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066823 ID=TCONS_00066823|Name=TCONS_00066823|organism=Clytia hemisphaerica|type=transcript|length=365bp|location=Sequence derived from alignment at scaffold_46:224401..224765 (Clytia hemisphaerica)
GGATAGTAGTTATCACCTACCTTCCCCCTGGGGGACTTTTGCCCCCGTAT
AGCttaaagtataatttttttctccaaagaaACATGGAACGCGTTCCACT
GAATCCGAAAAGTCAGACAGATAAAGTTTCCGCGTAGCGTAGTTAGTTTG
AATTAGCTTAGAGGAAGGTAATCCCGATTCAAGATGGCTGCCACTGAAGT
TGTTCACCTGAACGGTTCCAAACAATTAGACTGCCTCATTCGGCAACTAG
ACNTTGGCTCGTCAAagctaggctgctggcatccactaacggattcgtgc
tccttatagaggatgcttaataagctatatttcctttgtccagagatttg
ccgcctttagccgat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041786XLOC_041786Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066823-exon-scaffold_46-1491911889:224401..224765TCONS_00066823-exon-scaffold_46-1491911889:224401..224765Clytia hemisphaericaexon
TCONS_00066823-exon-scaffold_46-1510915933:224401..224765TCONS_00066823-exon-scaffold_46-1510915933:224401..224765Clytia hemisphaericaexon
TCONS_00066823-exon-scaffold_46-1575043694:224401..224765TCONS_00066823-exon-scaffold_46-1575043694:224401..224765Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:224401..224765 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.25253	4.53995	2.73275	4.311	7.49888	4.85369	3.34329	3.97662	1.38195	2.1144	2.27419	1.8255	1.39733	1.8198	1.5725	0.592041	2.21895	1.55676	0	1.47269	1.17549	0.979348	1.16462	1.16703	8.44298	10.1877	4.86118	0.893253	1.01432	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066823 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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