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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066822 ID=TCONS_00066822|Name=TCONS_00066822|organism=Clytia hemisphaerica|type=transcript|length=1443bp
TCGATTTCTTTTTTCAGACCTTTTTTCATATATACATATTCATACTAAAA
CATACAAATTATATATACCAGATTTATTAAAGATTATATTactatttcat
aaaaattttctttctaaacATGTGTTCACGACATTTTTGAATCAGAGGgt
cgtgttttgaaagtttatgaaAGTCATTCTCCGTGTTAAAGTGACCCACG
ACTGTTTGCTCCCTTACGATTGTCATTAAATGCGCCATATAAGTCAGCGC
GTACTTTAAAGTCTTGATTTTGGAGAGCGCGCGGTCTTCATTTCCGTAAC
ATGGAATCAGAATACGTAATTTCTCAAAAGCAGTGTTCAGTTCAGCAACG
CGGCGCCGTTCGAGTAAGTTAGCGACCGCGCGGTTTCGTCCAGGTCCAGC
TGGTAGTTTCAATACTTCTTCGCTCTTTCGTTTAATGTTCGTGCCATGCT
TGAGCGGAGGAGATTCATTGTGATCGACTACTTCAATTTCTTCCTCTTCC
TCTTTGATTTGTTTACTGTCTATAAGGAGTGCGCGGTCAATCGGAAATTC
CGCGCGAGTGGAACGTTGGTTTACCTTATTCTCAAGTTCATTCAATAAAG
CTTTCCGCTTCGATAACGGTTTGCGCTCGCTGTAAACATCTCTATCGTTC
CTGTAAATCACATTCACCTGCTTGATCTTACTCTCCTTTTTCTTGTTGCC
ATAATCTTTCGGTAAATGACAGTCTGCACATGCGCACGGCTTTGAAGACG
CACGAGGTGGTTCTTGATAATAAGTTGGATAATCTCGTCTCTCGTATTCG
TAAGGGAATCGAAGTTCTTTGTAATGATGTTGACGATGATACGAAAGATC
TTCTTCAAAAGCCTCTCTCCGTCTTTTGGAGAAAGCTTCAGATTCAATAG
GAAAGTCTTTGTGTGAATTACAGGAACTTCCAGCTGAATCCGTACTTCCA
CTTTCACGGGACCGATAATAGTGTATACTACTCGGATATTTTGTCAAGTT
TATATTCTCACCGCCGCAACAAGGTTTAGTACACCTTTCACCAGTATGTT
CACCACCACGGAGTCTATCGTAAACTGACCAATCGTCTGCTTTCTTGTAG
AGTCTCTGGAAAGCAGATCCAGTGAAATGTATGGGCGTCACAGAGGGAGA
TGGGTGTTTTTCTTCCTCATGTGAAGGGCGCAAGTATTCAACTTTCTTTG
ATCCTGTTTTCTCAGCCAATAAATTGTCGACGTGAAAgctgtttttcttc
ttcttgacGGGCTGTGCAATCACGTGATCCCTCTCTCGTCCAATCAGAGG
AGGGTATTTTGTCGATAGCGTTGGTGATTGatcagaaaattcaacttcGA
TGAATTTTCGTTTTGacatgtttgattttttttcttttcttgatacTGTT
TTATATTTCTaggagaaagaaagaaataagaTGAGTCGTGCGT Run BLAST on NCBI protein sequence of Hlh-3 >TCONS_00066822-protein ID=TCONS_00066822-protein|Name=Hlh-3|organism=Clytia hemisphaerica|type=polypeptide|length=425bp
MSKRKFIEVEFSDQSPTLSTKYPPLIGRERDHVIAQPVKKKKNSFHVDNL
LAEKTGSKKVEYLRPSHEEEKHPSPSVTPIHFTGSAFQRLYKKADDWSVY
DRLRGGEHTGERCTKPCCGGENINLTKYPSSIHYYRSRESGSTDSAGSSC
NSHKDFPIESEAFSKRRREAFEEDLSYHRQHHYKELRFPYEYERRDYPTY
YQEPPRASSKPCACADCHLPKDYGNKKKESKIKQVNVIYRNDRDVYSERK
PLSKRKALLNELENKVNQRSTRAEFPIDRALLIDSKQIKEEEEEIEVVDH
NESPPLKHGTNIKRKSEEVLKLPAGPGRNRAVANLLERRRVAELNTAFEK
LRILIPCYGNEDRALSKIKTLKYALTYMAHLMTIVREQTVVGHFNTENDF
HKLSKHDPLIQKCREHMFRKKIFMK Run BLAST on NCBI transcript from alignment at scaffold_46:190602..192044 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066822 ID=TCONS_00066822|Name=TCONS_00066822|organism=Clytia hemisphaerica|type=transcript|length=1443bp|location=Sequence derived from alignment at scaffold_46:190602..192044 (Clytia hemisphaerica)
ACGCACGACTCAtcttatttctttctttctcctAGAAATATAAAACAgta
tcaagaaaagaaaaaaaatcaaacatgtCAAAACGAAAATTCATCgaagt
tgaattttctgatCAATCACCAACGCTATCGACAAAATACCCTCCTCTGA
TTGGACGAGAGAGGGATCACGTGATTGCACAGCCCgtcaagaagaagaaa
aacagcTTTCACGTCGACAATTTATTGGCTGAGAAAACAGGATCAAAGAA
AGTTGAATACTTGCGCCCTTCACATGAGGAAGAAAAACACCCATCTCCCT
CTGTGACGCCCATACATTTCACTGGATCTGCTTTCCAGAGACTCTACAAG
AAAGCAGACGATTGGTCAGTTTACGATAGACTCCGTGGTGGTGAACATAC
TGGTGAAAGGTGTACTAAACCTTGTTGCGGCGGTGAGAATATAAACTTGA
CAAAATATCCGAGTAGTATACACTATTATCGGTCCCGTGAAAGTGGAAGT
ACGGATTCAGCTGGAAGTTCCTGTAATTCACACAAAGACTTTCCTATTGA
ATCTGAAGCTTTCTCCAAAAGACGGAGAGAGGCTTTTGAAGAAGATCTTT
CGTATCATCGTCAACATCATTACAAAGAACTTCGATTCCCTTACGAATAC
GAGAGACGAGATTATCCAACTTATTATCAAGAACCACCTCGTGCGTCTTC
AAAGCCGTGCGCATGTGCAGACTGTCATTTACCGAAAGATTATGGCAACA
AGAAAAAGGAGAGTAAGATCAAGCAGGTGAATGTGATTTACAGGAACGAT
AGAGATGTTTACAGCGAGCGCAAACCGTTATCGAAGCGGAAAGCTTTATT
GAATGAACTTGAGAATAAGGTAAACCAACGTTCCACTCGCGCGGAATTTC
CGATTGACCGCGCACTCCTTATAGACAGTAAACAAATCAAAGAGGAAGAG
GAAGAAATTGAAGTAGTCGATCACAATGAATCTCCTCCGCTCAAGCATGG
CACGAACATTAAACGAAAGAGCGAAGAAGTATTGAAACTACCAGCTGGAC
CTGGACGAAACCGCGCGGTCGCTAACTTACTCGAACGGCGCCGCGTTGCT
GAACTGAACACTGCTTTTGAGAAATTACGTATTCTGATTCCATGTTACGG
AAATGAAGACCGCGCGCTCTCCAAAATCAAGACTTTAAAGTACGCGCTGA
CTTATATGGCGCATTTAATGACAATCGTAAGGGAGCAAACAGTCGTGGGT
CACTTTAACACGGAGAATGACTttcataaactttcaaaacacgacCCTCT
GATTCAAAAATGTCGTGAACACATgtttagaaagaaaatttttatgaaat
agtAATATAATCTTTAATAAATCTGGTATATATAATTTGTATGTTTTAGT
ATGAATATGTATATATGAAAAAAGGTCTGAAAAAAGAAATCGA Coding sequence (CDS) from alignment at scaffold_46:190602..192044 >TCONS_00066822 ID=TCONS_00066822|Name=TCONS_00066822|organism=Clytia hemisphaerica|type=CDS|length=1278bp|location=Sequence derived from alignment at scaffold_46:190602..192044 (Clytia hemisphaerica)
atgtCAAAACGAAAATTCATCgaagttgaattttctgatCAATCACCAAC
GCTATCGACAAAATACCCTCCTCTGATTGGACGAGAGAGGGATCACGTGA
TTGCACAGCCCgtcaagaagaagaaaaacagcTTTCACGTCGACAATTTA
TTGGCTGAGAAAACAGGATCAAAGAAAGTTGAATACTTGCGCCCTTCACA
TGAGGAAGAAAAACACCCATCTCCCTCTGTGACGCCCATACATTTCACTG
GATCTGCTTTCCAGAGACTCTACAAGAAAGCAGACGATTGGTCAGTTTAC
GATAGACTCCGTGGTGGTGAACATACTGGTGAAAGGTGTACTAAACCTTG
TTGCGGCGGTGAGAATATAAACTTGACAAAATATCCGAGTAGTATACACT
ATTATCGGTCCCGTGAAAGTGGAAGTACGGATTCAGCTGGAAGTTCCTGT
AATTCACACAAAGACTTTCCTATTGAATCTGAAGCTTTCTCCAAAAGACG
GAGAGAGGCTTTTGAAGAAGATCTTTCGTATCATCGTCAACATCATTACA
AAGAACTTCGATTCCCTTACGAATACGAGAGACGAGATTATCCAACTTAT
TATCAAGAACCACCTCGTGCGTCTTCAAAGCCGTGCGCATGTGCAGACTG
TCATTTACCGAAAGATTATGGCAACAAGAAAAAGGAGAGTAAGATCAAGC
AGGTGAATGTGATTTACAGGAACGATAGAGATGTTTACAGCGAGCGCAAA
CCGTTATCGAAGCGGAAAGCTTTATTGAATGAACTTGAGAATAAGGTAAA
CCAACGTTCCACTCGCGCGGAATTTCCGATTGACCGCGCACTCCTTATAG
ACAGTAAACAAATCAAAGAGGAAGAGGAAGAAATTGAAGTAGTCGATCAC
AATGAATCTCCTCCGCTCAAGCATGGCACGAACATTAAACGAAAGAGCGA
AGAAGTATTGAAACTACCAGCTGGACCTGGACGAAACCGCGCGGTCGCTA
ACTTACTCGAACGGCGCCGCGTTGCTGAACTGAACACTGCTTTTGAGAAA
TTACGTATTCTGATTCCATGTTACGGAAATGAAGACCGCGCGCTCTCCAA
AATCAAGACTTTAAAGTACGCGCTGACTTATATGGCGCATTTAATGACAA
TCGTAAGGGAGCAAACAGTCGTGGGTCACTTTAACACGGAGAATGACTtt
cataaactttcaaaacacgacCCTCTGATTCAAAAATGTCGTGAACACAT
gtttagaaagaaaatttttatgaaatag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066822-exon-scaffold_46-1491911889:190602..192044 | TCONS_00066822-exon-scaffold_46-1491911889:190602..192044 | Clytia hemisphaerica | exon |
| TCONS_00066822-exon-scaffold_46-1510915933:190602..192044 | TCONS_00066822-exon-scaffold_46-1510915933:190602..192044 | Clytia hemisphaerica | exon |
| TCONS_00066822-exon-scaffold_46-1575043694:190602..192044 | TCONS_00066822-exon-scaffold_46-1575043694:190602..192044 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:190602..192044 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011598 | bHLH_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0046983 | protein dimerization activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0046983 |
protein dimerization activity |
Blast
The following BLAST results are available for this feature:
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