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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066820 ID=TCONS_00066820|Name=TCONS_00066820|organism=Clytia hemisphaerica|type=transcript|length=766bp
GAGTGCATTTTTTTGACAGATTGGAATGTTATGAATGTTGGGGAATGTTG
AAGGTACTCAAGTATTTCAATTACAGTAATTggatacaaaacaaaaacaa
aattgttaGAAAGGTTTGTTTGTATGTAGTAGAGGAACTGAAGGCATAGA
CCGCGGTCAGTGTTGAAGTATTAGCAAGTACAGAAATGTTTGTGGAAATA
TTGACAGCACTGTTGATTGGACCAGTAGTGTGCATCCTGATTCAATATGT
CAAGCATTTATCAGAACTTCACAAGTACCCAAAGGGTGCGTTTCCTTTGC
CCCtcattggaaatttgaatctGGTGCTTGGAAAGAAACCTTTTACGTCT
TTACGCGATTTGAGTGAGAAATATGGAGAAGTTTTCAGTTTAAGTTTTGG
AATGGAAAGAATCGTTATTATCAATGATGTCATAAATGCTAAAGAAGCCT
TGATGTCCAAAGGTAAGACCTTTCAAGTGACGTGTGCTGGTTGGCTAGAT
ACAGCCAAGGGCTAGATAGGAATCTTCAAACTTTCCCAGGCAAGGGCAAG
CGATGCCCTCTTAAATTTGCACCACATTTTGGATGACAGGTTGGATTTAG
CGCTCTACTCAGTACCTAGGCTACAAAGTATTTGTATGTGGaaggggaca
agctggagtttttacaagctcttatttgatttggttggtcgttaaccaat
aataaaaaaattttgttactttttctaaagaacgcgtcatctctatcact
tcaaatgaccaattcg Run BLAST on NCBI protein sequence of TCONS_00066820-protein >TCONS_00066820-protein ID=TCONS_00066820-protein|Name=TCONS_00066820-protein|organism=Clytia hemisphaerica|type=polypeptide|length=109bp
MFVEILTALLIGPVVCILIQYVKHLSELHKYPKGAFPLPLIGNLNLVLGK
KPFTSLRDLSEKYGEVFSLSFGMERIVIINDVINAKEALMSKGKTFQVTC
AGWLDTAKG Run BLAST on NCBI transcript from alignment at scaffold_46:166019..166784 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066820 ID=TCONS_00066820|Name=TCONS_00066820|organism=Clytia hemisphaerica|type=transcript|length=766bp|location=Sequence derived from alignment at scaffold_46:166019..166784 (Clytia hemisphaerica)
cgaattggtcatttgaagtgatagagatgacgcgttctttagaaaaagta
acaaaatttttttattattggttaacgaccaaccaaatcaaataagagct
tgtaaaaactccagcttgtccccttCCACATACAAATACTTTGTAGCCTA
GGTACTGAGTAGAGCGCTAAATCCAACCTGTCATCCAAAATGTGGTGCAA
ATTTAAGAGGGCATCGCTTGCCCTTGCCTGGGAAAGTTTGAAGATTCCTA
TCTAGCCCTTGGCTGTATCTAGCCAACCAGCACACGTCACTTGAAAGGTC
TTACCTTTGGACATCAAGGCTTCTTTAGCATTTATGACATCATTGATAAT
AACGATTCTTTCCATTCCAAAACTTAAACTGAAAACTTCTCCATATTTCT
CACTCAAATCGCGTAAAGACGTAAAAGGTTTCTTTCCAAGCACCagattc
aaatttccaatgaGGGGCAAAGGAAACGCACCCTTTGGGTACTTGTGAAG
TTCTGATAAATGCTTGACATATTGAATCAGGATGCACACTACTGGTCCAA
TCAACAGTGCTGTCAATATTTCCACAAACATTTCTGTACTTGCTAATACT
TCAACACTGACCGCGGTCTATGCCTTCAGTTCCTCTACTACATACAAACA
AACCTTTCtaacaattttgtttttgttttgtatccAATTACTGTAATTGA
AATACTTGAGTACCTTCAACATTCCCCAACATTCATAACATTCCAATCTG
TCAAAAAAATGCACTC Coding sequence (CDS) from alignment at scaffold_46:166019..166784 >TCONS_00066820 ID=TCONS_00066820|Name=TCONS_00066820|organism=Clytia hemisphaerica|type=CDS|length=330bp|location=Sequence derived from alignment at scaffold_46:166019..166784 (Clytia hemisphaerica)
CTAGCCCTTGGCTGTATCTAGCCAACCAGCACACGTCACTTGAAAGGTCT
TACCTTTGGACATCAAGGCTTCTTTAGCATTTATGACATCATTGATAATA
ACGATTCTTTCCATTCCAAAACTTAAACTGAAAACTTCTCCATATTTCTC
ACTCAAATCGCGTAAAGACGTAAAAGGTTTCTTTCCAAGCACCagattca
aatttccaatgaGGGGCAAAGGAAACGCACCCTTTGGGTACTTGTGAAGT
TCTGATAAATGCTTGACATATTGAATCAGGATGCACACTACTGGTCCAAT
CAACAGTGCTGTCAATATTTCCACAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066820-exon-scaffold_46-1491911889:166019..166784 | TCONS_00066820-exon-scaffold_46-1491911889:166019..166784 | Clytia hemisphaerica | exon |
| TCONS_00066820-exon-scaffold_46-1510915933:166019..166784 | TCONS_00066820-exon-scaffold_46-1510915933:166019..166784 | Clytia hemisphaerica | exon |
| TCONS_00066820-exon-scaffold_46-1575043694:166019..166784 | TCONS_00066820-exon-scaffold_46-1575043694:166019..166784 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:166019..166784 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001128 | Cyt_P450 |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005506 | iron ion binding |
| GO:0020037 | heme binding |
| GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055114 | oxidation-reduction process |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055114 |
oxidation-reduction process |
| molecular_function |
GO:0020037 |
heme binding |
| molecular_function |
GO:0005506 |
iron ion binding |
| molecular_function |
GO:0016705 |
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen |
Blast
The following BLAST results are available for this feature:
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