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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066818 ID=TCONS_00066818|Name=TCONS_00066818|organism=Clytia hemisphaerica|type=transcript|length=1622bp
CTCATTGAAAGACGGAACTTAGCACAACATGGTTGCAGTTGATTTTAACT
ACAAagattggctcaaaaaacgaaaaacaacAACGAAAGTTTTTATCGTC
GTTCAATTTGCACTAGGTATCGAATATTCGATGACCTTTACAACATTGTA
CTTGTACTTAAAAGACGTTTTACACGTCACAAACAACCTTAATGCTTTTT
ATAGCAGTATTTGTGGAATATATGTTTCAACACAGATTGTTGCATCGTTG
GTTTTGTGCCGTTTGTTTGATAAATATCGAACTTTGAAACTTTTCTTTAT
TCTCGTTACATTTATAACATTTGTTGGAAATGTTTTGTACACAATCCCAT
ACTCACCGTATCTCTTGTTAGCCGGTCGTTTCCTTTCCGGAACTGGAGGC
TCCCTTAGACCAATTATATTATCTGAATTGACCAGGACATATCCTAGTGA
TGAAGTAATGGCACAAATGCCGGCAATGACTGTTAGTTATGGTATTGGCT
TCACACTTGGTCCGGTGATTAATTTTGCTTTTGTGAAAGCACGATTTACA
CTACTTGGTATACCGATCAGCTATGCTAATGGAGCTGGATTAGCGTTATC
AATCGCATTCCTAGTAGCGTTTGCTATGTCTATCTTTTTTGTAAGTGAtc
tatcaaaagaatttgactTAAAGGAGGAAATACAAAAGATGGATGTTGAC
AAACTATCATTAGATACTTTATGTGGTGCAAATGAAGAAGATCCATCCGA
AAAAGTCTCTGAAAGAAACGATCGCGATAACGAACCTCTGTTGGGTAAAG
ACCCTTCCGAGAATGGAATAGAAGTGAGCCAATTAGGAATAATGGAGACT
CTTATGAAGCTGTTCTCTTCAATCGACATCGTTCTGATTTTTGTTTTCGC
ATTTTTCGCTTACATCACAATGCTATTGCAAGATCTTTGGATATCTATGG
CAGTCATCAAGTTATTACATTGGACAGTTCTGGAAATCaatcttattttc
attttcaatggcATCATTATCAGTTCAATTTGTTTGGTCTTGGTATTCAA
ACCACCATCGAAGAATCAGTTGGTCAATATTGGGATTGCGAGTTTTGTAG
CAACATGCTACacatttggaatttttttatatttccgtTTGGTTAAAAAC
ATAGAATGGATCAATGTGGCATTATGGGTTATCTATCCTTTTATGATGTC
TactgttgtttttgttgatgaGTTATTCACGATGAGTGTTTTGGCCCAAA
TGGTTCCATCCAAGATTCAAGCATTTTCAGAaagcgttcgattgatgttc
tcCAGATTAGGAGCAACCCTTGGTTTGTTCACTGCAGCTTTTGcctttga
atatattttatacGTTTGTCCATCATGTATGGTCATTTCTTTGGTGTTGA
TGTTCTTCTTGATTTGGAGAAAGAaacattttcaatatccaaagaTAATT
ATCTTGTAAAAACAAAATGCGCATCACCATTAGATATTTGTCAGAAAGAC
ATAATTGTTGGAAATTAAGTACTGAATTAAAACATCATCCACATATTGAT
AAAAGACATTTTCCAAATTCGTTTTGCACCAAATGTTTGAGTGATCTGCA
AAGAGCGgcctttgaaaatttt Run BLAST on NCBI protein sequence of TCONS_00066818-protein >TCONS_00066818-protein ID=TCONS_00066818-protein|Name=TCONS_00066818-protein|organism=Clytia hemisphaerica|type=polypeptide|length=476bp
MVAVDFNYKDWLKKRKTTTKVFIVVQFALGIEYSMTFTTLYLYLKDVLHV
TNNLNAFYSSICGIYVSTQIVASLVLCRLFDKYRTLKLFFILVTFITFVG
NVLYTIPYSPYLLLAGRFLSGTGGSLRPIILSELTRTYPSDEVMAQMPAM
TVSYGIGFTLGPVINFAFVKARFTLLGIPISYANGAGLALSIAFLVAFAM
SIFFVSDLSKEFDLKEEIQKMDVDKLSLDTLCGANEEDPSEKVSERNDRD
NEPLLGKDPSENGIEVSQLGIMETLMKLFSSIDIVLIFVFAFFAYITMLL
QDLWISMAVIKLLHWTVLEINLIFIFNGIIISSICLVLVFKPPSKNQLVN
IGIASFVATCYTFGIFLYFRLVKNIEWINVALWVIYPFMMSTVVFVDELF
TMSVLAQMVPSKIQAFSESVRLMFSRLGATLGLFTAAFAFEYILYVCPSC
MVISLVLMFFLIWRKKHFQYPKIIIL Run BLAST on NCBI transcript from alignment at scaffold_46:95661..97282 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066818 ID=TCONS_00066818|Name=TCONS_00066818|organism=Clytia hemisphaerica|type=transcript|length=1622bp|location=Sequence derived from alignment at scaffold_46:95661..97282 (Clytia hemisphaerica)
aaaattttcaaaggcCGCTCTTTGCAGATCACTCAAACATTTGGTGCAAA
ACGAATTTGGAAAATGTCTTTTATCAATATGTGGATGATGTTTTAATTCA
GTACTTAATTTCCAACAATTATGTCTTTCTGACAAATATCTAATGGTGAT
GCGCATTTTGTTTTTACAAGATAATTAtctttggatattgaaaatgttTC
TTTCTCCAAATCAAGAAGAACATCAACACCAAAGAAATGACCATACATGA
TGGACAAACgtataaaatatattcaaaggCAAAAGCTGCAGTGAACAAAC
CAAGGGTTGCTCCTAATCTGgagaacatcaatcgaacgcttTCTGAAAAT
GCTTGAATCTTGGATGGAACCATTTGGGCCAAAACACTCATCGTGAATAA
CtcatcaacaaaaacaacagtAGACATCATAAAAGGATAGATAACCCATA
ATGCCACATTGATCCATTCTATGTTTTTAACCAAacggaaatataaaaaa
attccaaatgtGTAGCATGTTGCTACAAAACTCGCAATCCCAATATTGAC
CAACTGATTCTTCGATGGTGGTTTGAATACCAAGACCAAACAAATTGAAC
TGATAATGATgccattgaaaatgaaaataagattGATTTCCAGAACTGTC
CAATGTAATAACTTGATGACTGCCATAGATATCCAAAGATCTTGCAATAG
CATTGTGATGTAAGCGAAAAATGCGAAAACAAAAATCAGAACGATGTCGA
TTGAAGAGAACAGCTTCATAAGAGTCTCCATTATTCCTAATTGGCTCACT
TCTATTCCATTCTCGGAAGGGTCTTTACCCAACAGAGGTTCGTTATCGCG
ATCGTTTCTTTCAGAGACTTTTTCGGATGGATCTTCTTCATTTGCACCAC
ATAAAGTATCTAATGATAGTTTGTCAACATCCATCTTTTGTATTTCCTCC
TTTAagtcaaattcttttgatagaTCACTTACAAAAAAGATAGACATAGC
AAACGCTACTAGGAATGCGATTGATAACGCTAATCCAGCTCCATTAGCAT
AGCTGATCGGTATACCAAGTAGTGTAAATCGTGCTTTCACAAAAGCAAAA
TTAATCACCGGACCAAGTGTGAAGCCAATACCATAACTAACAGTCATTGC
CGGCATTTGTGCCATTACTTCATCACTAGGATATGTCCTGGTCAATTCAG
ATAATATAATTGGTCTAAGGGAGCCTCCAGTTCCGGAAAGGAAACGACCG
GCTAACAAGAGATACGGTGAGTATGGGATTGTGTACAAAACATTTCCAAC
AAATGTTATAAATGTAACGAGAATAAAGAAAAGTTTCAAAGTTCGATATT
TATCAAACAAACGGCACAAAACCAACGATGCAACAATCTGTGTTGAAACA
TATATTCCACAAATACTGCTATAAAAAGCATTAAGGTTGTTTGTGACGTG
TAAAACGTCTTTTAAGTACAAGTACAATGTTGTAAAGGTCATCGAATATT
CGATACCTAGTGCAAATTGAACGACGATAAAAACTTTCGTTgttgttttt
cgttttttgagccaatctTTGTAGTTAAAATCAACTGCAACCATGTTGTG
CTAAGTTCCGTCTTTCAATGAG Coding sequence (CDS) from alignment at scaffold_46:95661..97282 >TCONS_00066818 ID=TCONS_00066818|Name=TCONS_00066818|organism=Clytia hemisphaerica|type=CDS|length=1431bp|location=Sequence derived from alignment at scaffold_46:95661..97282 (Clytia hemisphaerica)
TTACAAGATAATTAtctttggatattgaaaatgttTCTTTCTCCAAATCA
AGAAGAACATCAACACCAAAGAAATGACCATACATGATGGACAAACgtat
aaaatatattcaaaggCAAAAGCTGCAGTGAACAAACCAAGGGTTGCTCC
TAATCTGgagaacatcaatcgaacgcttTCTGAAAATGCTTGAATCTTGG
ATGGAACCATTTGGGCCAAAACACTCATCGTGAATAACtcatcaacaaaa
acaacagtAGACATCATAAAAGGATAGATAACCCATAATGCCACATTGAT
CCATTCTATGTTTTTAACCAAacggaaatataaaaaaattccaaatgtGT
AGCATGTTGCTACAAAACTCGCAATCCCAATATTGACCAACTGATTCTTC
GATGGTGGTTTGAATACCAAGACCAAACAAATTGAACTGATAATGATgcc
attgaaaatgaaaataagattGATTTCCAGAACTGTCCAATGTAATAACT
TGATGACTGCCATAGATATCCAAAGATCTTGCAATAGCATTGTGATGTAA
GCGAAAAATGCGAAAACAAAAATCAGAACGATGTCGATTGAAGAGAACAG
CTTCATAAGAGTCTCCATTATTCCTAATTGGCTCACTTCTATTCCATTCT
CGGAAGGGTCTTTACCCAACAGAGGTTCGTTATCGCGATCGTTTCTTTCA
GAGACTTTTTCGGATGGATCTTCTTCATTTGCACCACATAAAGTATCTAA
TGATAGTTTGTCAACATCCATCTTTTGTATTTCCTCCTTTAagtcaaatt
cttttgatagaTCACTTACAAAAAAGATAGACATAGCAAACGCTACTAGG
AATGCGATTGATAACGCTAATCCAGCTCCATTAGCATAGCTGATCGGTAT
ACCAAGTAGTGTAAATCGTGCTTTCACAAAAGCAAAATTAATCACCGGAC
CAAGTGTGAAGCCAATACCATAACTAACAGTCATTGCCGGCATTTGTGCC
ATTACTTCATCACTAGGATATGTCCTGGTCAATTCAGATAATATAATTGG
TCTAAGGGAGCCTCCAGTTCCGGAAAGGAAACGACCGGCTAACAAGAGAT
ACGGTGAGTATGGGATTGTGTACAAAACATTTCCAACAAATGTTATAAAT
GTAACGAGAATAAAGAAAAGTTTCAAAGTTCGATATTTATCAAACAAACG
GCACAAAACCAACGATGCAACAATCTGTGTTGAAACATATATTCCACAAA
TACTGCTATAAAAAGCATTAAGGTTGTTTGTGACGTGTAAAACGTCTTTT
AAGTACAAGTACAATGTTGTAAAGGTCATCGAATATTCGATACCTAGTGC
AAATTGAACGACGATAAAAACTTTCGTTgttgtttttcgttttttgagcc
aatctTTGTAGTTAAAATCAACTGCAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066818-exon-scaffold_46-1491911889:95661..97282 | TCONS_00066818-exon-scaffold_46-1491911889:95661..97282 | Clytia hemisphaerica | exon |
| TCONS_00066818-exon-scaffold_46-1510915933:95661..97282 | TCONS_00066818-exon-scaffold_46-1510915933:95661..97282 | Clytia hemisphaerica | exon |
| TCONS_00066818-exon-scaffold_46-1575043694:95661..97282 | TCONS_00066818-exon-scaffold_46-1575043694:95661..97282 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:95661..97282 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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