TCONS_00066813 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066813
Unique NameTCONS_00066813
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length429

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066813 ID=TCONS_00066813|Name=TCONS_00066813|organism=Clytia hemisphaerica|type=transcript|length=429bp
GTTCCAAGGGTGACTTTAATGTCCTctgctttaaaatgaaattcacAGAT
AACTGTTGTAGATGTGATTTTGAACTTATCTTTTCCTCCCTTTCGTCGAT
ACCGGTAAATGATTCGTTTCCATTCTTGATTTCGTTTAGGGTTAGTTGGG
ATCTTGAAAAATCCAATTTCAGTTTTGGTCATGTCACTGTTATAAAAGCT
GCTCTTGCATTCGGGTATACAACAATATGCACCTTTTCctcctttcaaaa
cttttccaggTCGCGTAGCAGACGATCCAGCATATCCTCAGAAGCCATTT
TTAACTAAAGACACATAAAATTTTGTTTCTATTCACTGAAAATCTTTACT
CATCTTGGTTTTTTCTTCTATAAACTACGGTGGCTGAGAGGGGACAGcgc
gttttctttttttttgtcgcgttttcttt
Run BLAST on NCBI

transcript from alignment at scaffold_46:13342..13770

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066813 ID=TCONS_00066813|Name=TCONS_00066813|organism=Clytia hemisphaerica|type=transcript|length=429bp|location=Sequence derived from alignment at scaffold_46:13342..13770 (Clytia hemisphaerica)
aaagaaaacgcgacaaaaaaaaagaaaacgcgCTGTCCCCTCTCAGCCAC
CGTAGTTTATAGAAGAAAAAACCAAGATGAGTAAAGATTTTCAGTGAATA
GAAACAAAATTTTATGTGTCTTTAGTTAAAAATGGCTTCTGAGGATATGC
TGGATCGTCTGCTACGCGAcctggaaaagttttgaaaggagGAAAAGGTG
CATATTGTTGTATACCCGAATGCAAGAGCAGCTTTTATAACAGTGACATG
ACCAAAACTGAAATTGGATTTTTCAAGATCCCAACTAACCCTAAACGAAA
TCAAGAATGGAAACGAATCATTTACCGGTATCGACGAAAGGGAGGAAAAG
ATAAGTTCAAAATCACATCTACAACAGTTATCTgtgaatttcattttaaa
gcagAGGACATTAAAGTCACCCTTGGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041776XLOC_041776Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066813-exon-scaffold_46-1491911889:13342..13770TCONS_00066813-exon-scaffold_46-1491911889:13342..13770Clytia hemisphaericaexon
TCONS_00066813-exon-scaffold_46-1510915933:13342..13770TCONS_00066813-exon-scaffold_46-1510915933:13342..13770Clytia hemisphaericaexon
TCONS_00066813-exon-scaffold_46-1575043694:13342..13770TCONS_00066813-exon-scaffold_46-1575043694:13342..13770Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:13342..13770 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.58772	0.229695	3.29347	1.12283	0.791964	0.804381	0.356478	2.36446	0.603893	0.740196	0	1.50269	0.170351	0.221075	0.692614	1.02006	0.145058	0.682397	0.238013	0.620398	0.804081	0	1.26597	0	4.42051	3.62993	0	0.235988	0.562735	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066813 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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