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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066811 ID=TCONS_00066811|Name=TCONS_00066811|organism=Clytia hemisphaerica|type=transcript|length=2897bp
atttgtttgtttttatttttattttatttagaggTTTTTTGGCATTGTTT
ATAATATTTAAAGTACACTATGAACATCTTTggtaaaaacatatttttta
gtaaaaagacTTTTCAAACAAGCTTTGTACTGTAGTTGAAGGAATTTATG
ACCACTATTTGATATTACCATAGCAATCAGTATTTCAAATAGGGAATTAA
GTCGAAAATTTAGCTGATTTAATTCTATTCGTGTCGTGACTGGAGTATGT
ATGAAATGAAGTTGCTCATAATTTTCATGTCATATCACTGGTAATATTTC
ATTATAATCCAAAACGTTCTTTTTCATAAGCAAATGACTGATATTTCATG
TTTCTTTTTCagttaaaaaatgagaaaatttgaaaacaaaacaaaaggtc
CAGACAATAGAAGATATGATGGAAAAAACTGGTGTATTAAAAAGTATCCT
GTTATTTATTCAAGTAAAACAAATTTGCGTTTTCACCTGTTATAAAGTTG
TCACCCGTTTTGGAAAAGACATACAATGACTATTATCTGTTGAATTATCC
ACCAAAACGACTGATGGCCAAGGAAAATCGTAACAAAAAGGAACATCACA
GTTTATTTTGATGACGTTGAAAAGGAAGAGAGTAGTTGAACTGACAACTG
TTGTTTTTGACAAGAAGAATAACTTCGTCTAAAGATCCAATACGGCTGGA
GAATTTTTGTCACGTGTCATTACTGGTTTGGAGTAAACGAGTATGAAGAA
CTCTTTCTGATGTCGTTTTTGGACTAtaaacacttttaaaaattatttta
ttctaTATGGTCTGATCTATGAATTTCAGTCCCCAATAAAATCCTTAAAA
CCCAAAGTACCCATTTTCCATTTACCCCCTTTACTTTGAAAACTTCATCT
TAATACTCCCCCTCAATTTTTACAAAGCATGTAAATCCAATATACAGCTT
AATTTATGAGGTagaatgaaaaaagaagaataatGAAGTTTATTGCAAGA
TCAAAAGACCTATCCTTgacaaaaaagctaaaatagGGTAGTTTTTCTCT
GCCTCAAGATATCCTTTAGTCATAAGTATAAAGGCATAAGCTTGAAATTT
TTAACCAATTTAAGACTGAGTACATAGTAAACtttatgcttacaaaaaag
gAAGGTATGAGAGCTCTGTGCCGAATTTCAGCTACATAATTTATTTTAAG
GTTAAACCCTAATTCTACCATACTATCGGAGATACATAACCTTCATATAT
GTACTTAATTTTTAACTATTTCGTTggatattttgtctttttgctTTTAT
TAATAGTAATGTCAATTATAGCCGTTGTAACCGTTAGCGTTACGCTCTAA
ACATTAGTCAGTAAGAAAAACgcttgaaaaaaattagaaacgattcttga
ttttctttttttagttctTGACGAAACAAACGGTCTTTTAAGATGGAGCC
TTCCCTAACTAGGagtacaaaatgaaaattcaaatcgATTCAATCGAATT
TTTCGACTTGGTTTGCCCTTGCTCCATTCAAGGCTATATTTCCAGCAGAT
TTGGAACATTATTCGGATGTTTTTATTAGAATTAGAACCAAGGCCTGAAA
GTGTAATATTAGAGAAAAATTGATTAAGTGTTAAATTAAttaagattttc
gaaaaaatgtacGCGTTAAAATGGAGAATCTACGGTACGGAGGTctaaaa
gtcatgttttccttGACTAGAGCTTCGAAGTTAATTTTTGTGATCTTACT
CATCGATAATAAAAAGTGAGTATCGAATTTTTTACCTATTTCCCTTTACA
TAAAAAAAGAAGCTATATCCCCGAAAATgtcgggatgagctggagttttt
ataagatacttcactaattgatcatttgaagtgatagaaatgacgcgttc
tttagaaaacgtaacaaaattgttttattactggttaacgaccaaccaaa
tcaaataagagcttgcaaaaactccagcttgtcccaaaatGTCGtctaca
gtaaaacctctaattaaggGACACTCCAAAAGGTATCCGATTAGCGGACA
ATTATATTTTCCTAGTTTCCTAGTctcctagtcaaatccttatAAAAATC
TTTCCAAAAGGTGGATAATCAATTAGCTGACTCTCCATTTAGCGGACAAA
GTTTTCTGCACGAAAAGGCCTAGACCCTATATATTTTCCTCTCTAATTAA
GTAGCCGACATCAAACATCAAACTGCGGTTACAtacataaaattttaaga
ttcgaGCGATtcatttaaattattttgacaCTTCTATATAATAATAGCCA
TTTGTGTGAAGCCTTTTTTGCAGCGTTTtgattttcgctagcgattttag
aTCTCCGTCTATCTTTTTCCGGGGCacatgttttatatttttatcaacat
ttttagcctaaaacatGAGGTTTTTGGTAATTCTTGCCCCATGTATAATA
TAAAATCGATAGCAATAGAGCGCAGAAAACTTATGAATTCCTCCATATTG
AATTTTGAGTAATCtgttattaatttcgcatagcgaaagtattacgatcg
tCTTtctatgtgtgtgtgtgtgtggcgagaaaatttttggggcgcaaatt
atggcgtgggcgtttggctgcgggcgtactacggccaatgtTCTAAAAGT
GGACTCACTCACAGAaataaaaaacagcgcttttcttaataattaaaata
cgctagtgcaagaagtgtaaccaagcctttgtaaacatttatCTTCATCa
ttagaattttttaatggctgcttgattgcactTATGCTTTTGCCTCTTTG
AAACTTGacctgtataaatttttatcatgttttctggtcttttgtagagt
atttagaggtttattattcgtttactactaagtattttatgtttgtg Run BLAST on NCBI transcript from alignment at scaffold_46:6613..9509 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066811 ID=TCONS_00066811|Name=TCONS_00066811|organism=Clytia hemisphaerica|type=transcript|length=2897bp|location=Sequence derived from alignment at scaffold_46:6613..9509 (Clytia hemisphaerica)
cacaaacataaaatacttagtagtaaacgaataataaacctctaaatact
ctacaaaagaccagaaaacatgataaaaatttatacaggtCAAGTTTCAA
AGAGGCAAAAGCATAagtgcaatcaagcagccattaaaaaattctaatGA
TGAAGataaatgtttacaaaggcttggttacacttcttgcactagcgtat
tttaattattaagaaaagcgctgttttttattTCTGTGAGTGAGTCCACT
TTTAGAacattggccgtagtacgcccgcagccaaacgcccacgccataat
ttgcgccccaaaaattttctcgccacacacacacacacatagaAAGacga
tcgtaatactttcgctatgcgaaattaataacaGATTACTCAAAATTCAA
TATGGAGGAATTCATAAGTTTTCTGCGCTCTATTGCTATCGATTTTATAT
TATACATGGGGCAAGAATTACCAAAAACCTCatgttttaggctaaaaatg
ttgataaaaatataaaacatgtGCCCCGGAAAAAGATAGACGGAGAtcta
aaatcgctagcgaaaatcaAAACGCTGCAAAAAAGGCTTCACACAAATGG
CTATTATTATATAGAAGtgtcaaaataatttaaatgaATCGCtcgaatct
taaaattttatgtaTGTAACCGCAGTTTGATGTTTGATGTCGGCTACTTA
ATTAGAGAGGAAAATATATAGGGTCTAGGCCTTTTCGTGCAGAAAACTTT
GTCCGCTAAATGGAGAGTCAGCTAATTGATTATCCACCTTTTGGAAAGAT
TTTTataaggatttgactaggagACTAGGAAACTAGGAAAATATAATTGT
CCGCTAATCGGATACCTTTTGGAGTGTCccttaattagaggttttactgt
agaCGACattttgggacaagctggagtttttgcaagctcttatttgattt
ggttggtcgttaaccagtaataaaacaattttgttacgttttctaaagaa
cgcgtcatttctatcacttcaaatgatcaattagtgaagtatcttataaa
aactccagctcatcccgacATTTTCGGGGATATAGCTTCTTTTTTTATGT
AAAGGGAAATAGGTAAAAAATTCGATACTCACTTTTTATTATCGATGAGT
AAGATCACAAAAATTAACTTCGAAGCTCTAGTCaaggaaaacatgacttt
tagACCTCCGTACCGTAGATTCTCCATTTTAACGCgtacattttttcgaa
aatcttaaTTAATTTAACACTTAATCAATTTTTCTCTAATATTACACTTT
CAGGCCTTGGTTCTAATTCTAATAAAAACATCCGAATAATGTTCCAAATC
TGCTGGAAATATAGCCTTGAATGGAGCAAGGGCAAACCAAGTCGAAAAAT
TCGATTGAATcgatttgaattttcattttgtactCCTAGTTAGGGAAGGC
TCCATCTTAAAAGACCGTTTGTTTCGTCAagaactaaaaaaagaaaatca
agaatcgtttctaatttttttcaagcGTTTTTCTTACTGACTAATGTTTA
GAGCGTAACGCTAACGGTTACAACGGCTATAATTGACATTACTATTAATA
AAagcaaaaagacaaaatatccAACGAAATAGTTAAAAATTAAGTACATA
TATGAAGGTTATGTATCTCCGATAGTATGGTAGAATTAGGGTTTAACCTT
AAAATAAATTATGTAGCTGAAATTCGGCACAGAGCTCTCATACCTTcctt
ttttgtaagcataaaGTTTACTATGTACTCAGTCTTAAATTGGTTAAAAA
TTTCAAGCTTATGCCTTTATACTTATGACTAAAGGATATCTTGAGGCAGA
GAAAAACTACCctattttagcttttttgtcAAGGATAGGTCTTTTGATCT
TGCAATAAACTTCattattcttcttttttcattctACCTCATAAATTAAG
CTGTATATTGGATTTACATGCTTTGTAAAAATTGAGGGGGAGTATTAAGA
TGAAGTTTTCAAAGTAAAGGGGGTAAATGGAAAATGGGTACTTTGGGTTT
TAAGGATTTTATTGGGGACTGAAATTCATAGATCAGACCATAtagaataa
aataatttttaaaagtgtttaTAGTCCAAAAACGACATCAGAAAGAGTTC
TTCATACTCGTTTACTCCAAACCAGTAATGACACGTGACAAAAATTCTCC
AGCCGTATTGGATCTTTAGACGAAGTTATTCTTCTTGTCAAAAACAACAG
TTGTCAGTTCAACTACTCTCTTCCTTTTCAACGTCATCAAAATAAACTGT
GATGTTCCTTTTTGTTACGATTTTCCTTGGCCATCAGTCGTTTTGGTGGA
TAATTCAACAGATAATAGTCATTGTATGTCTTTTCCAAAACGGGTGACAA
CTTTATAACAGGTGAAAACGCAAATTTGTTTTACTTGAATAAATAACAGG
ATACTTTTTAATACACCAGTTTTTTCCATCATATCTTCTATTGTCTGgac
cttttgttttgttttcaaattttctcattttttaactGAAAAAGAAACAT
GAAATATCAGTCATTTGCTTATGAAAAAGAACGTTTTGGATTATAATGAA
ATATTACCAGTGATATGACATGAAAATTATGAGCAACTTCATTTCATACA
TACTCCAGTCACGACACGAATAGAATTAAATCAGCTAAATTTTCGACTTA
ATTCCCTATTTGAAATACTGATTGCTATGGTAATATCAAATAGTGGTCAT
AAATTCCTTCAACTACAGTACAAAGCTTGTTTGAAAAgtctttttactaa
aaaatatgtttttaccAAAGATGTTCATAGTGTACTTTAAATATTATAAA
CAATGCCAAAAAAcctctaaataaaataaaaataaaaacaaacaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066811-exon-scaffold_46-1491911889:6613..9509 | TCONS_00066811-exon-scaffold_46-1491911889:6613..9509 | Clytia hemisphaerica | exon |
| TCONS_00066811-exon-scaffold_46-1510915933:6613..9509 | TCONS_00066811-exon-scaffold_46-1510915933:6613..9509 | Clytia hemisphaerica | exon |
| TCONS_00066811-exon-scaffold_46-1575043694:6613..9509 | TCONS_00066811-exon-scaffold_46-1575043694:6613..9509 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:6613..9509 . |
Blast
The following BLAST results are available for this feature:
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