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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066810 ID=TCONS_00066810|Name=TCONS_00066810|organism=Clytia hemisphaerica|type=transcript|length=1451bp
TTTTGAATGTAAAGTTTCGTCTGCTATATTCGATCAAGCTAATGAGTTAG
TGACAAGTCGTCTGTGACGAACGGCCTTGGACCGCTAGTTGTACCGCTAG
TTGTACAGTGTGTCCGTAAAAAACgtacaaatttttatatttaaggGCTC
taaccatagtgaatttttcaaattaccATGCACAAAACATCAATTTCTGC
CTGATATAGCCATCAAAACTATGACATGTTATATTACGGACACACTGTAG
TTTAAATGAAAAAGCTTTTCTTTCCATAAAATGTTAGTTCCATTATGACT
GTATTGTGGTAGAGGATTGAAAAGATAACAAATCTCGATAACCAAATTTA
TTTGCCTGCTGAATATctctttctatttctattatCTTACCAATATAATA
CCACTGTAAATTATGATCCTAATAAAAATTAAACACATTTGTTTATGATT
TGAAGAAAAGTAGCTCTAGCTTCTGTCCAATTTTTAGGAGGAAATGAAAT
ATGTTCGGCTTCTACGACGTATTGAAAATATTCGTCCAATTCTTCGTCAT
GGTTTTCATTTACAGCTATTGCCGCTTCATGAAGAATATCCCTTTCGTTT
GAGAGATTAGTTAGCAAAACATTAgtaataattttctttctgtcTTCGAA
TCCAACTGACTCCGGGGCATAGAATAAAACATTTGGAATACCAGAAACGG
TATCATGGCGAGACTTTCGGATGTAGTGAGAATTCCATTCATGTTTTACT
TCATCCAGCTGATTTtgtagaaaatttgaaaatacaaacCACACGTATTT
CATATGTACGTGGTGACCTAGAATGAGCAATCCTTCGTTAACAAGCTCCT
TAAAAAAGTTGATTATCCATCCGGTAAAAgatctttttaaaaatgaccAC
CAGTTTTCTATCCGTTGATTAGCCACTGAAGTTCCATAAAAATGCGCATT
TTCGTTTTGGACGAAAAAACAATGAACATCAGCCATGATGCCATTTTCAG
TTCCAAGATCTGTTCTCATTATAGTTGGGCAAGATTTGAACTCTTGTACA
GTTTTTAAGTACTTGGCAGCAATAATAACAGGGTTGTTATTAGATTCAAC
TACATCGAGCCACATGATCTTCCGGGAAAATCCATCAATGCATCCATGAA
TTGCTAGACCGTAGGGCTTCAACTTATCATAGCCATCTACGTGTCAGCAA
TGGTTCGCTCCAGGAGATGAGTATGCACGCCTGTTTAAGCGTCTATTTCG
TCTTATAAGAACACCTTGTGGGTCCAACTCTCTCATGAGTCTCATAACAT
GATCTGTTTTTACACGAATACCATACGAACGTTTTAAATGATCCCGCATA
CTACGATACCCCTTACTTTGACCTGGCCCGTCCATTTCACGTAAAATAAT
AGCAGAAAGGGCAGGGGTTGAAATATTGGAAAATTGTCTTGACAAACCAT
A Run BLAST on NCBI protein sequence of TCONS_00066810-protein >TCONS_00066810-protein ID=TCONS_00066810-protein|Name=TCONS_00066810-protein|organism=Clytia hemisphaerica|type=polypeptide|length=228bp
MWLDVVESNNNPVIIAAKYLKTVQEFKSCPTIMRTDLGTENGIMADVHCF
FVQNENAHFYGTSVANQRIENWWSFLKRSFTGWIINFFKELVNEGLLILG
HHVHMKYVWFVFSNFLQNQLDEVKHEWNSHYIRKSRHDTVSGIPNVLFYA
PESVGFEDRKKIITNVLLTNLSNERDILHEAAIAVNENHDEELDEYFQYV
VEAEHISFPPKNWTEARATFLQIINKCV Run BLAST on NCBI transcript from alignment at scaffold_46:3117..4567 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066810 ID=TCONS_00066810|Name=TCONS_00066810|organism=Clytia hemisphaerica|type=transcript|length=1451bp|location=Sequence derived from alignment at scaffold_46:3117..4567 (Clytia hemisphaerica)
TATGGTTTGTCAAGACAATTTTCCAATATTTCAACCCCTGCCCTTTCTGC
TATTATTTTACGTGAAATGGACGGGCCAGGTCAAAGTAAGGGGTATCGTA
GTATGCGGGATCATTTAAAACGTTCGTATGGTATTCGTGTAAAAACAGAT
CATGTTATGAGACTCATGAGAGAGTTGGACCCACAAGGTGTTCTTATAAG
ACGAAATAGACGCTTAAACAGGCGTGCATACTCATCTCCTGGAGCGAACC
ATTGCTGACACGTAGATGGCTATGATAAGTTGAAGCCCTACGGTCTAGCA
ATTCATGGATGCATTGATGGATTTTCCCGGAAGATCATGTGGCTCGATGT
AGTTGAATCTAATAACAACCCTGTTATTATTGCTGCCAAGTACTTAAAAA
CTGTACAAGAGTTCAAATCTTGCCCAACTATAATGAGAACAGATCTTGGA
ACTGAAAATGGCATCATGGCTGATGTTCATTGTTTTTTCGTCCAAAACGA
AAATGCGCATTTTTATGGAACTTCAGTGGCTAATCAACGGATAGAAAACT
GGTggtcatttttaaaaagatcTTTTACCGGATGGATAATCAACTTTTTT
AAGGAGCTTGTTAACGAAGGATTGCTCATTCTAGGTCACCACGTACATAT
GAAATACGTGTGgtttgtattttcaaattttctacaAAATCAGCTGGATG
AAGTAAAACATGAATGGAATTCTCACTACATCCGAAAGTCTCGCCATGAT
ACCGTTTCTGGTATTCCAAATGTTTTATTCTATGCCCCGGAGTCAGTTGG
ATTCGAAgacagaaagaaaattattacTAATGTTTTGCTAACTAATCTCT
CAAACGAAAGGGATATTCTTCATGAAGCGGCAATAGCTGTAAATGAAAAC
CATGACGAAGAATTGGACGAATATTTTCAATACGTCGTAGAAGCCGAACA
TATTTCATTTCCTCCTAAAAATTGGACAGAAGCTAGAGCTACTTTTCTTC
AAATCATAAACAAATGTGTTTAATTTTTATTAGGATCATAATTTACAGTG
GTATTATATTGGTAAGataatagaaatagaaagagATATTCAGCAGGCAA
ATAAATTTGGTTATCGAGATTTGTTATCTTTTCAATCCTCTACCACAATA
CAGTCATAATGGAACTAACATTTTATGGAAAGAAAAGCTTTTTCATTTAA
ACTACAGTGTGTCCGTAATATAACATGTCATAGTTTTGATGGCTATATCA
GGCAGAAATTGATGTTTTGTGCATggtaatttgaaaaattcactatggtt
aGAGCccttaaatataaaaatttgtacGTTTTTTACGGACACACTGTACA
ACTAGCGGTACAACTAGCGGTCCAAGGCCGTTCGTCACAGACGACTTGTC
ACTAACTCATTAGCTTGATCGAATATAGCAGACGAAACTTTACATTCAAA
A Coding sequence (CDS) from alignment at scaffold_46:3117..4567 >TCONS_00066810 ID=TCONS_00066810|Name=TCONS_00066810|organism=Clytia hemisphaerica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_46:3117..4567 (Clytia hemisphaerica)
ATGTGGCTCGATGTAGTTGAATCTAATAACAACCCTGTTATTATTGCTGC
CAAGTACTTAAAAACTGTACAAGAGTTCAAATCTTGCCCAACTATAATGA
GAACAGATCTTGGAACTGAAAATGGCATCATGGCTGATGTTCATTGTTTT
TTCGTCCAAAACGAAAATGCGCATTTTTATGGAACTTCAGTGGCTAATCA
ACGGATAGAAAACTGGTggtcatttttaaaaagatcTTTTACCGGATGGA
TAATCAACTTTTTTAAGGAGCTTGTTAACGAAGGATTGCTCATTCTAGGT
CACCACGTACATATGAAATACGTGTGgtttgtattttcaaattttctaca
AAATCAGCTGGATGAAGTAAAACATGAATGGAATTCTCACTACATCCGAA
AGTCTCGCCATGATACCGTTTCTGGTATTCCAAATGTTTTATTCTATGCC
CCGGAGTCAGTTGGATTCGAAgacagaaagaaaattattacTAATGTTTT
GCTAACTAATCTCTCAAACGAAAGGGATATTCTTCATGAAGCGGCAATAG
CTGTAAATGAAAACCATGACGAAGAATTGGACGAATATTTTCAATACGTC
GTAGAAGCCGAACATATTTCATTTCCTCCTAAAAATTGGACAGAAGCTAG
AGCTACTTTTCTTCAAATCATAAACAAATGTGTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066810-exon-scaffold_46-1491911889:3117..4567 | TCONS_00066810-exon-scaffold_46-1491911889:3117..4567 | Clytia hemisphaerica | exon |
| TCONS_00066810-exon-scaffold_46-1510915933:3117..4567 | TCONS_00066810-exon-scaffold_46-1510915933:3117..4567 | Clytia hemisphaerica | exon |
| TCONS_00066810-exon-scaffold_46-1575043694:3117..4567 | TCONS_00066810-exon-scaffold_46-1575043694:3117..4567 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:3117..4567 . |
Blast
The following BLAST results are available for this feature:
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