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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066808 ID=TCONS_00066808|Name=TCONS_00066808|organism=Clytia hemisphaerica|type=transcript|length=1591bp
ACCACCGGGATTCTATGATTAAGTCGGAATGGCTTGTGATCAAATATTCA
ATTATAAAAATCTTTATATATCGTTGTATTTCCTATTTTAGTAAGTAGTC
CTAAAGACGTAAGCAAACATCATCCTAAGaaatttctttgaataaaaaag
tgAGCCACCAAAGAAGAAAGTCTCTCTATTTGAATCAATCAAACTTCGAC
CAATTCGACAATGAACAGCAACTACAGTAATCTCACTAATTCGTCCAATA
CCAGAATCTCGTTACCTAGCAACACGACAACCATTTTCGAACAGATTCCT
ATCGTTATCATggcaatatttttattcttcACCAACCTCTTTCTGTTAAT
TTCACTTCGAAAACAAAGCGGAAATTTTCACGTCTTGTTGAAATTTTTGA
CCCTTTTTGATCTTCTACCGGCATACAATCTCGCCCAAGATGCAGTCTGG
AAATACACAATGCATGTTACCAAAGTGGGATGCTTgatcaataaatattt
tttcgaaGTATCTTACCTGATGTCAGGTTTCACTCTTGCTTTAATGTCGT
ACGACCGATTTCGTGTGATTTGTCAACCGCTACGGGAGAAAATAGAAAAC
CGAACGCTGTACATCGTAATTGGAGCTTTCCTAATTGTAGTGACCCTGAT
TGAAATTTACCCACTATCCGTATTACCTGAAGACATCAACGGCTCTCAAT
GTGGGTACTCCGTTGGATTAGACTGGCACCCGGTACAAGTAATCATCCGG
GTTATCACACTATTAACGGTCATCACTGGACAAACAATTTCTACGATCAA
AATCAAGACAGCGTTAACAAGAGTCACAGGTTTGATACAATCTGAAGAAA
TCCATGCTCGAAATATGAAAGTGTTGAAGTCTGTTCGGAAAATGCAGTTG
GTGTTTTTAGCACTTGTGTTACCATTTACATTGGTCTATATCTTTGTTGG
ATTCATGGCCAAGTGGGAATTCATGGCGATCAGAGCCCTCTCTTCAGAGA
AAGGGAGCATTTTCAACGTCGCATTGAGTTTTACATTCCTGCTATCGATG
GTAAACCACGTGGTGAATCCATTCATCTATGGTAAACTTCATCAAAAGAT
TTGTTGCAGGAAAAGTAGACGTGTTCAACCACTCAACACTGCCCAACAAA
CCGCTTCCACTGCTGCCACGGTAAGTCAGGGAGTCATGAGAAAAACATCC
ACTCAAAGGTCGATTGTCACTGATCTTTCTACCAGGAAGATTCAACCAAT
GAAATCAAGTGCTGGTCGAATGACGATCCAGGAATCATCAGACTCAAAAT
GCTGATCGATTAATGTTAAAAGCGTCAACTTTAACTGGGCTGCTTTTGAA
AATAACACTCATCAATAACACAACCACACAAGACCTTTAACCATGCATGG
GTTCAATGAGAGAAATATTCATCGGAGTTAGATCCAAAATCTCGTTCCTC
AAAACTCTATTTAACAATAAAGAAAGCTACCAGCTACCAGCGACGCATCG
ATCGAAATCCATCAGCAACCCAAGATTGTAAACTACAATACAGTAAGCAA
AGAGAGAGGCCTTCTTGGTGTTTTATGTCAAAATGTGTTTC Run BLAST on NCBI protein sequence of TCONS_00066808-protein >TCONS_00066808-protein ID=TCONS_00066808-protein|Name=TCONS_00066808-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp
MNSNYSNLTNSSNTRISLPSNTTTIFEQIPIVIMAIFLFFTNLFLLISLR
KQSGNFHVLLKFLTLFDLLPAYNLAQDAVWKYTMHVTKVGCLINKYFFEV
SYLMSGFTLALMSYDRFRVICQPLREKIENRTLYIVIGAFLIVVTLIEIY
PLSVLPEDINGSQCGYSVGLDWHPVQVIIRVITLLTVITGQTISTIKIKT
ALTRVTGLIQSEEIHARNMKVLKSVRKMQLVFLALVLPFTLVYIFVGFMA
KWEFMAIRALSSEKGSIFNVALSFTFLLSMVNHVVNPFIYGKLHQKICCR
KSRRVQPLNTAQQTASTAATVSQGVMRKTSTQRSIVTDLSTRKIQPMKSS
AGRMTIQESSDSKC Run BLAST on NCBI transcript from alignment at scaffold_46:406550..408531- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066808 ID=TCONS_00066808|Name=TCONS_00066808|organism=Clytia hemisphaerica|type=transcript|length=1982bp|location=Sequence derived from alignment at scaffold_46:406550..408531- (Clytia hemisphaerica)
ACCACCGGGATTCTATGATTAAGTCGGAATGGCTTGTGATCAAATATTCA
ATTATAAAAATCTTTATATATCGTTGTATTTCCTATTTTAGTAAGTAGTC
CTAAAGACGTAAGCAAACATCATCCTAAGAAATTTCTTTGAATAAAAAAG
TGAGCCACCAAAGAAGAAAGTCTCTCTATTTGAATCAATCAAACTTCGAC
CAATTCGACAATGAACAGCAACTACAGTAATCTCACTAATTCGTCCAATA
CCAGAATCTCGTTACCTAGCAACACGACAACCATTTTCGAACAGATTCCT
ATCGTTATCATGGCAATATTTTTATTCTTCACCAACCTCTTTCTGTTAAT
TTCACTTCGAAAACAAAGCGGAAATTTTCACGTCTTGTTGAAATTTTTGA
CCCTTTTTGATCTTCTACCGGCATACAATCTCGCCCAAGATGCAGTCTGG
AAATACACAATGCATGTTACCAAAGTGGGATGCTTGATCAATAAATATTT
TTTCGAAGTATCTTACCTGATGTCAGGTTTCACTCTTGCTTTAATGTCGT
ACGACCGATTTCGTGTGATTTGTCAACCGCTACGGGAGAAAATAGAAAAC
CGAACGCTGTACATCGTAATTGGAGCTTTCCTAATTGTAGTGACCCTGAT
TGAAATTTACCCACTATCCGTATTACCTGAAGACATCAACGGCTCTCAAT
GTGGGTACTCCGTTGGATTAGACTGGCACCCGGTACAAGTAATCATCCGG
GTTATCACACTATTAACGGTCATCACTGGACAAACAATTTCTACGATCAA
AATCAAGACAGCGTTAACAAGAGTCACAGGTTTGATACAATCTGAAGAAA
TCCATGCTCGAAATATGAAAGTGTTGAAGTCTGTTCGGAAAATGCAGTTG
GTGTTTTTAGCACTTGTGTTACCATTTACATTGGTCTATATCTTTGTTGG
ATTCATGGCCAAGTGGGAATTCATGGCGATCAGAGCCCTCTCTTCAGAGT
AAGTCAAAACATAGAACTTTCAAACTCGTACCCAGTGGGACTGACACAAA
ATAGATTGTGTCAAAAAAGAACAAGATCCTAAATTTTCTCCCGTATAACC
GAATCTCGCTAACTCGAGCTTAAATGGGGAATTTCATTTGTCCGAATTAC
AAAGAGATTCGATTGTAGAAAGTATCTGAAAATGTCTTTCCTTAACGGGA
CTGGAAACAAGTTCGAATTATTCAAAGATTCCAATACTATAGAAGTTCGA
ATAAGCAAAAATTTACTGTACTTATAAGNAAAGTGTCTGAAAATAATACT
AGAAGTTCGAATAAGCGAAAATTTACTGTACTTATAGTAAGATACGTTTT
GAAGAACTTTCTTAAAACATTGATTATCTTTCATTTTAGGAAAGGGAGCA
TTTTCAACGTCGCATTGAGTTTTACATTCCTGCTATCGATGGTAAACCAC
GTGGTGAATCCATTCATCTATGGTAAACTTCATCAAAAGATTTGTTGCAG
GAAAAGTAGACGTGTTCAACCACTCAACACTGCCCAACAAACCGCTTCCA
CTGCTGCCACGGTAAGTCAGGGAGTCATGAGAAAAACATCCACTCAAAGG
TCGATTGTCACTGATCTTTCTACCAGGAAGATTCAACCAATGAAATCAAG
TGCTGGTCGAATGACGATCCAGGAATCATCAGACTCAAAATGCTGATCGA
TTAATGTTAAAAGCGTCAACTTTAACTGGGCTGCTTTTGAAAATAACACT
CATCAATAACACAACCACACAAGACCTTTAACCATGCATGGGTTCAATGA
GAGAAATATTCATCGGAGTTAGATCCAAAATCTCGTTCCTCAAAACTCTA
TTTAACAATAAAGAAAGCTACCAGCTACCAGCGACGCATCGATCGAAATC
CATCAGCAACCCAAGATTGTAAACTACAATACAGTAAGCAAAGAGAGAGG
CCTTCTTGGTGTTTTATGTCAAAATGTGTTTC Coding sequence (CDS) from alignment at scaffold_46:406550..408531- >TCONS_00066808 ID=TCONS_00066808|Name=TCONS_00066808|organism=Clytia hemisphaerica|type=CDS|length=2190bp|location=Sequence derived from alignment at scaffold_46:406550..408531- (Clytia hemisphaerica)
GAAAGGGAGCATTTTCAACGTCGCATTGAGTTTTACATTCCTGCTATCGA
TGGTAAACCACGTGGTGAATCCATTCATCTATGGTAAACTTCATCAAAAG
ATTTGTTGCAGGAAAAGTAGACGTGTTCAACCACTCAACACTGCCCAACA
AACCGCTTCCACTGCTGCCACGGTAAGTCAGGGAGTCATGAGAAAAACAT
CCACTCAAAGGTCGATTGTCACTGATCTTTCTACCAGGAAGATTCAACCA
ATGAAATCAAGTGCTGGTCGAATGACGATCCAGGAATCATCAGACTCAAA
ATGCTGAATGAACAGCAACTACAGTAATCTCACTAATTCGTCCAATACCA
GAATCTCGTTACCTAGCAACACGACAACCATTTTCGAACAGATTCCTATC
GTTATCATGGCAATATTTTTATTCTTCACCAACCTCTTTCTGTTAATTTC
ACTTCGAAAACAAAGCGGAAATTTTCACGTCTTGTTGAAATTTTTGACCC
TTTTTGATCTTCTACCGGCATACAATCTCGCCCAAGATGCAGTCTGGAAA
TACACAATGCATGTTACCAAAGTGGGATGCTTGATCAATAAATATTTTTT
CGAAGTATCTTACCTGATGTCAGGTTTCACTCTTGCTTTAATGTCGTACG
ACCGATTTCGTGTGATTTGTCAACCGCTACGGGAGAAAATAGAAAACCGA
ACGCTGTACATCGTAATTGGAGCTTTCCTAATTGTAGTGACCCTGATTGA
AATTTACCCACTATCCGTATTACCTGAAGACATCAACGGCTCTCAATGTG
GGTACTCCGTTGGATTAGACTGGCACCCGGTACAAGTAATCATCCGGGTT
ATCACACTATTAACGGTCATCACTGGACAAACAATTTCTACGATCAAAAT
CAAGACAGCGTTAACAAGAGTCACAGGTTTGATACAATCTGAAGAAATCC
ATGCTCGAAATATGAAAGTGTTGAAGTCTGTTCGGAAAATGCAGTTGGTG
TTTTTAGCACTTGTGTTACCATTTACATTGGTCTATATCTTTGTTGGATT
CATGGCCAAGTGGGAATTCATGGCGATCAGAGCCCTCTCTTCAGAGAAAG
GGAGCATTTTCAACGTCGCATTGAGTTTTACATTCCTGCTATCGATGGTA
AACCACGTGGTGAATCCATTCATCTATGGTAAACTTCATCAAAAGATTTG
TTGCAGGAAAAGTAGACGTGTTCAACCACTCAACACTGCCCAACAAACCG
CTTCCACTGCTGCCACGGTAAGTCAGGGAGTCATGAGAAAAACATCCACT
CAAAGGTCGATTGTCACTGATCTTTCTACCAGGAAGATTCAACCAATGAA
ATCAAGTGCTGGTCGAATGACGATCCAGGAATCATCAGACTCAAAATGCT
GAATGAACAGCAACTACAGTAATCTCACTAATTCGTCCAATACCAGAATC
TCGTTACCTAGCAACACGACAACCATTTTCGAACAGATTCCTATCGTTAT
CATGGCAATATTTTTATTCTTCACCAACCTCTTTCTGTTAATTTCACTTC
GAAAACAAAGCGGAAATTTTCACGTCTTGTTGAAATTTTTGACCCTTTTT
GATCTTCTACCGGCATACAATCTCGCCCAAGATGCAGTCTGGAAATACAC
AATGCATGTTACCAAAGTGGGATGCTTGATCAATAAATATTTTTTCGAAG
TATCTTACCTGATGTCAGGTTTCACTCTTGCTTTAATGTCGTACGACCGA
TTTCGTGTGATTTGTCAACCGCTACGGGAGAAAATAGAAAACCGAACGCT
GTACATCGTAATTGGAGCTTTCCTAATTGTAGTGACCCTGATTGAAATTT
ACCCACTATCCGTATTACCTGAAGACATCAACGGCTCTCAATGTGGGTAC
TCCGTTGGATTAGACTGGCACCCGGTACAAGTAATCATCCGGGTTATCAC
ACTATTAACGGTCATCACTGGACAAACAATTTCTACGATCAAAATCAAGA
CAGCGTTAACAAGAGTCACAGGTTTGATACAATCTGAAGAAATCCATGCT
CGAAATATGAAAGTGTTGAAGTCTGTTCGGAAAATGCAGTTGGTGTTTTT
AGCACTTGTGTTACCATTTACATTGGTCTATATCTTTGTTGGATTCATGG
CCAAGTGGGAATTCATGGCGATCAGAGCCCTCTCTTCAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066808-exon-scaffold_46-1575043694:407534..408531 | TCONS_00066808-exon-scaffold_46-1575043694:407534..408531 | Clytia hemisphaerica | exon |
| TCONS_00066808-exon-scaffold_46-1575043694:406550..407142 | TCONS_00066808-exon-scaffold_46-1575043694:406550..407142 | Clytia hemisphaerica | exon |
| TCONS_00066808-exon-scaffold_46-1510915933:407534..408531 | TCONS_00066808-exon-scaffold_46-1510915933:407534..408531 | Clytia hemisphaerica | exon |
| TCONS_00066808-exon-scaffold_46-1510915933:406550..407142 | TCONS_00066808-exon-scaffold_46-1510915933:406550..407142 | Clytia hemisphaerica | exon |
| TCONS_00066808-exon-scaffold_46-1491911889:407534..408531 | TCONS_00066808-exon-scaffold_46-1491911889:407534..408531 | Clytia hemisphaerica | exon |
| TCONS_00066808-exon-scaffold_46-1491911889:406550..407142 | TCONS_00066808-exon-scaffold_46-1491911889:406550..407142 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:406550..408531 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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