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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066807 ID=TCONS_00066807|Name=TCONS_00066807|organism=Clytia hemisphaerica|type=transcript|length=1982bp
ACCACCGGGATTCTATGATTAAGTCGGAATGGCTTGTGATCAAATATTCA
ATTATAAAAATCTTTATATATCGTTGTATTTCCTATTTTAGTAAGTAGTC
CTAAAGACGTAAGCAAACATCATCCTAAGaaatttctttgaataaaaaag
tgAGCCACCAAAGAAGAAAGTCTCTCTATTTGAATCAATCAAACTTCGAC
CAATTCGACAATGAACAGCAACTACAGTAATCTCACTAATTCGTCCAATA
CCAGAATCTCGTTACCTAGCAACACGACAACCATTTTCGAACAGATTCCT
ATCGTTATCATggcaatatttttattcttcACCAACCTCTTTCTGTTAAT
TTCACTTCGAAAACAAAGCGGAAATTTTCACGTCTTGTTGAAATTTTTGA
CCCTTTTTGATCTTCTACCGGCATACAATCTCGCCCAAGATGCAGTCTGG
AAATACACAATGCATGTTACCAAAGTGGGATGCTTgatcaataaatattt
tttcgaaGTATCTTACCTGATGTCAGGTTTCACTCTTGCTTTAATGTCGT
ACGACCGATTTCGTGTGATTTGTCAACCGCTACGGGAGAAAATAGAAAAC
CGAACGCTGTACATCGTAATTGGAGCTTTCCTAATTGTAGTGACCCTGAT
TGAAATTTACCCACTATCCGTATTACCTGAAGACATCAACGGCTCTCAAT
GTGGGTACTCCGTTGGATTAGACTGGCACCCGGTACAAGTAATCATCCGG
GTTATCACACTATTAACGGTCATCACTGGACAAACAATTTCTACGATCAA
AATCAAGACAGCGTTAACAAGAGTCACAGGTTTGATACAATCTGAAGAAA
TCCATGCTCGAAATATGAAAGTGTTGAAGTCTGTTCGGAAAATGCAGTTG
GTGTTTTTAGCACTTGTGTTACCATTTACATTGGTCTATATCTTTGTTGG
ATTCATGGCCAAGTGGGAATTCATGGCGATCAGAGCCCTCTCTTCAGAGT
AAGTCAAAACATAGAACTTTCAAACTCGTACCCAGTGGGACTGACACAAA
ATAGattgtgtcaaaaaagaacaaGATCCTAAATTTTCTCCCGTATAACC
GAATCTCGCTAACTCGAGCTTAAATGGGGAATTTCATTTGTCCGAATTAC
AAAGAGATTCGATTGTAGAAAGTATCTGAAAATGTCTTTCCTTAACggga
ctggaaacaagttcgaattattcAAAGATTCCAATActatagaagttcga
ataagcaaaaatttactgtaCTTATAAGNAAAGTGTCTGAAAATAATact
agaagttcgaataagcgaaaATTTACTGTACTTATAGTAAGATACGTTTT
GAAGAACTTTCTTAAAACATTGATTATCTTTCATTTTAGGAAAGGGAGCA
TTTTCAACGTCGCATTGAGTTTTACATTCCTGCTATCGATGGTAAACCAC
GTGGTGAATCCATTCATCTATGGTAAACTTCATCAAAAGATTTGTTGCAG
GAAAAGTAGACGTGTTCAACCACTCAACACTGCCCAACAAACCGCTTCCA
CTGCTGCCACGGTAAGTCAGGGAGTCATGAGAAAAACATCCACTCAAAGG
TCGATTGTCACTGATCTTTCTACCAGGAAGATTCAACCAATGAAATCAAG
TGCTGGTCGAATGACGATCCAGGAATCATCAGACTCAAAATGCTGATCGA
TTAATGTTAAAAGCGTCAACTTTAACTGGGCTGCTTTTGAAAATAACACT
CATCAATAACACAACCACACAAGACCTTTAACCATGCATGGGTTCAATGA
GAGAAATATTCATCGGAGTTAGATCCAAAATCTCGTTCCTCAAAACTCTA
TTTAACAATAAAGAAAGCTACCAGCTACCAGCGACGCATCGATCGAAATC
CATCAGCAACCCAAGATTGTAAACTACAATACAGTAAGCAAAGAGAGAGG
CCTTCTTGGTGTTTTATGTCAAAATGTGTTTC Run BLAST on NCBI transcript from alignment at scaffold_46:406550..408531- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066807 ID=TCONS_00066807|Name=TCONS_00066807|organism=Clytia hemisphaerica|type=transcript|length=1982bp|location=Sequence derived from alignment at scaffold_46:406550..408531- (Clytia hemisphaerica)
ACCACCGGGATTCTATGATTAAGTCGGAATGGCTTGTGATCAAATATTCA
ATTATAAAAATCTTTATATATCGTTGTATTTCCTATTTTAGTAAGTAGTC
CTAAAGACGTAAGCAAACATCATCCTAAGAAATTTCTTTGAATAAAAAAG
TGAGCCACCAAAGAAGAAAGTCTCTCTATTTGAATCAATCAAACTTCGAC
CAATTCGACAATGAACAGCAACTACAGTAATCTCACTAATTCGTCCAATA
CCAGAATCTCGTTACCTAGCAACACGACAACCATTTTCGAACAGATTCCT
ATCGTTATCATGGCAATATTTTTATTCTTCACCAACCTCTTTCTGTTAAT
TTCACTTCGAAAACAAAGCGGAAATTTTCACGTCTTGTTGAAATTTTTGA
CCCTTTTTGATCTTCTACCGGCATACAATCTCGCCCAAGATGCAGTCTGG
AAATACACAATGCATGTTACCAAAGTGGGATGCTTGATCAATAAATATTT
TTTCGAAGTATCTTACCTGATGTCAGGTTTCACTCTTGCTTTAATGTCGT
ACGACCGATTTCGTGTGATTTGTCAACCGCTACGGGAGAAAATAGAAAAC
CGAACGCTGTACATCGTAATTGGAGCTTTCCTAATTGTAGTGACCCTGAT
TGAAATTTACCCACTATCCGTATTACCTGAAGACATCAACGGCTCTCAAT
GTGGGTACTCCGTTGGATTAGACTGGCACCCGGTACAAGTAATCATCCGG
GTTATCACACTATTAACGGTCATCACTGGACAAACAATTTCTACGATCAA
AATCAAGACAGCGTTAACAAGAGTCACAGGTTTGATACAATCTGAAGAAA
TCCATGCTCGAAATATGAAAGTGTTGAAGTCTGTTCGGAAAATGCAGTTG
GTGTTTTTAGCACTTGTGTTACCATTTACATTGGTCTATATCTTTGTTGG
ATTCATGGCCAAGTGGGAATTCATGGCGATCAGAGCCCTCTCTTCAGAGT
AAGTCAAAACATAGAACTTTCAAACTCGTACCCAGTGGGACTGACACAAA
ATAGATTGTGTCAAAAAAGAACAAGATCCTAAATTTTCTCCCGTATAACC
GAATCTCGCTAACTCGAGCTTAAATGGGGAATTTCATTTGTCCGAATTAC
AAAGAGATTCGATTGTAGAAAGTATCTGAAAATGTCTTTCCTTAACGGGA
CTGGAAACAAGTTCGAATTATTCAAAGATTCCAATACTATAGAAGTTCGA
ATAAGCAAAAATTTACTGTACTTATAAGNAAAGTGTCTGAAAATAATACT
AGAAGTTCGAATAAGCGAAAATTTACTGTACTTATAGTAAGATACGTTTT
GAAGAACTTTCTTAAAACATTGATTATCTTTCATTTTAGGAAAGGGAGCA
TTTTCAACGTCGCATTGAGTTTTACATTCCTGCTATCGATGGTAAACCAC
GTGGTGAATCCATTCATCTATGGTAAACTTCATCAAAAGATTTGTTGCAG
GAAAAGTAGACGTGTTCAACCACTCAACACTGCCCAACAAACCGCTTCCA
CTGCTGCCACGGTAAGTCAGGGAGTCATGAGAAAAACATCCACTCAAAGG
TCGATTGTCACTGATCTTTCTACCAGGAAGATTCAACCAATGAAATCAAG
TGCTGGTCGAATGACGATCCAGGAATCATCAGACTCAAAATGCTGATCGA
TTAATGTTAAAAGCGTCAACTTTAACTGGGCTGCTTTTGAAAATAACACT
CATCAATAACACAACCACACAAGACCTTTAACCATGCATGGGTTCAATGA
GAGAAATATTCATCGGAGTTAGATCCAAAATCTCGTTCCTCAAAACTCTA
TTTAACAATAAAGAAAGCTACCAGCTACCAGCGACGCATCGATCGAAATC
CATCAGCAACCCAAGATTGTAAACTACAATACAGTAAGCAAAGAGAGAGG
CCTTCTTGGTGTTTTATGTCAAAATGTGTTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066807-exon-scaffold_46-1575043694:406550..408531 | TCONS_00066807-exon-scaffold_46-1575043694:406550..408531 | Clytia hemisphaerica | exon |
| TCONS_00066807-exon-scaffold_46-1510915933:406550..408531 | TCONS_00066807-exon-scaffold_46-1510915933:406550..408531 | Clytia hemisphaerica | exon |
| TCONS_00066807-exon-scaffold_46-1491911889:406550..408531 | TCONS_00066807-exon-scaffold_46-1491911889:406550..408531 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:406550..408531 - |
Blast
The following BLAST results are available for this feature:
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