TCONS_00066802 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066802
Unique NameTCONS_00066802
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1797

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066802 ID=TCONS_00066802|Name=TCONS_00066802|organism=Clytia hemisphaerica|type=transcript|length=1797bp
ATTAACTGTTAAGAGCGGTTTTCGCTCAACATATTGTAGAAAGATGTGTA
AATATTTcgttaaaatatttaaaaaaattatgcaaaagtCATTTGGATGA
AGGAACTTGTTTGGATATGGAGAATTATTATTTCATATTGGCGTTACTTT
TAAGCTTATTTTGTTTGGTGAAAACAGaTGACATCTTCGCAATACTGGAG
AAAAACAACTCCACTACAAACGTAACGCAACTAAAAATCTCTGCAGAAAG
CGAGCTCCATAAAAAGTTATTTGGAAATTGTTCTCTCGAGCTGACAAAGA
ACAAATTCTCACGTGAATGTACAATGTTTTCATTTCCGGACGAAACCAGT
TCCATTACTGTCCGAATCGGGATGTCTTTGGTTCAGATTGAGGAATTCCA
TGAGTTAAATGGCATACTCACCCTCCGAATGTACTATCGACAGATTTGGT
GGAACAAGAAACTGACTTGGGACCCTGAAGAATATGAAAACATTTCTGAG
ATCAATGTCAATCCGAAATTAGTTTGGTCACCTGATATCTATATTTATGA
CAGTCGTGGCGAGGAAAAGATTCACGGTAGTTATTTGAACGTGGCAAATA
CGTTAATCTCTTTACGCCATGACGGCCGTCACATGTGGTTAGCGCCGTTT
AGATCGGAAACGAATTGTCCGTTACACGTCATCGATTATCCGTTCGACAT
TCAACAATGCGATATCAGGCTAGGGAGCATGACACTAGACTCGAAGAAAT
TGATTGTGAAATCAGAAGCTCCTTTTCTGGACTTGTCCATGTTCCACAAT
CATTCCGAATGGAATATCCTATCTGCGAACGGACGGAACgaaatgaactt
caaaaatccGGACATGAACAAATTCTCAGAAATCATTTATGTTGTTCGAA
TCAAACGAAAGCCATTATTTCTCATTACGTCATTAATCATGCCCAAATTT
GGAATCACTCTGATCAGTCTCCTCGCTCATGTTATCCCGGCGGCATCTGG
CGAACGAATTCTGATGTTGATTGATTTGATGTTAGTATTGGCTTTATTTT
TGACCAATGTTATGGATATCATCCCCGGCGCTGCTGGAGAGGTTCCTTTC
TTTACGTACTTTCTTCTCTTGACATTGATTGGGATGGTGACCAATATAGT
CACCATGGTCTATACTTTAAGTATCTACTTTGCTAATTGTACTGTCTTGG
AAATGCCTCGCTGGTTACGATATTACGTTTTAGATCATCTAGCACCAAGT
ATGGGTTATCGAGATCGTTATACAACTCCCAAATGGATGATCAAGTTAAT
GGCTATTGAAGAACATTGCCAGAGAAACCAACAACAGAATCCAATAAATT
CAATTCTCGGTAAAAGACACCCAGGACGTTTGTGGGGAGCTACTGAATTA
CGGTCGAATGTTATAGAGATTGTAGATGATTTATCGCAAGGTCATTCACT
CTCGTCATTAAATTTATGCCTTTTATCCCAGAAATTATCCCTGATACTTG
ATTGGTTAAAGGAGGAAGAGAGAAAACGGATATTGAAAGATGATTGGTTA
CTGGTTGCTAAGGCACTAGATCAAGTGACATTATACATCAACTGCTCTAT
ATTAGCGACAGTCATTTTTTGGTTCTTTTATAAAGCTTATAGTTGCTCAC
TAGTTAATTGAAATTTCCTGTAGAGATGACATATGTCTACAAAATGAATT
TTGTAATTTGTTCTTTAAGTTACGTTAGAATATTTGTTCTTTGCTTGCTA
CTTGATATAATGATACAAATCTGAAAGACTTTTTTTCTATTAGACTG
Run BLAST on NCBI

transcript from alignment at scaffold_46:362012..372127-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066802 ID=TCONS_00066802|Name=TCONS_00066802|organism=Clytia hemisphaerica|type=transcript|length=10116bp|location=Sequence derived from alignment at scaffold_46:362012..372127- (Clytia hemisphaerica)
ATTAACTGTTAAGAGCGGTTTTCGCTCAACATATTGTAGAAAGATGTGTA
AATATTTCGTTAAAATATTTAAAAAAATTATGCAAAAGTCATTTGGATGA
AGGAACTTGTTTGGATATGGAGAATTATTATTTCATATTGGCGTTACTTT
TAAGCTTATTTTGTTTGGTGAAAACAGGTACAGTAACTTCTCGTCTTTTA
TCCCAATGAGGTAATATAGCTTCAATGTTCTTCAACATTCGAAAGTGGAG
TCTTCGACCTGTGCCGTTCAAGAGAAAACTAAGCCTTTAGATATCCGCCG
TATTTCGGCTGACAGATTTTGAAATTTGCAAGAGAAATTTTTTTCGAAAT
CAGTCGGAAAATGATAGTTTCAATCATGCGATTATGTGAAAACAACGCAT
GCCGAGGATAGATTCCTCTCTAATACTACCCTGAGTATCAGAGGTTAAGT
TTTCAAAGAAAATAGTAACCTCTGAAGACAAATAATAGAAATTTTATCGC
GCATGTGTCAATCTAATCACTGTAGAAAAAATCAAAGATGAAGAGCAAAT
ATTACCATACTAGCCGGTACCCGGCGTCGCACGCCGGTTAAGCTGTAGCT
GAACGCACTAAAAGCCCCTTGGATGTTGAAGCTGGCTTAAAAAATGATCA
AATTAATAAAAAGATATCTCCAAATTTTGACTCTAACCCTCGAACCCTCC
CCCGGAGATCTTTTTCTCGCTTCGCTCGCATTAAATACGCCGTCCAGCTT
TCGACAATTTGAGAAAATGTCATGGTAGAGAGGAGTGAAATGTAGACATG
ACAATTCTTTATGAAAAAGTGGGAAAGCCACAAAGAATAGTGCAACTTTC
GAACTTTGTTTTTATCAGATTTAAAAAGATAAATAAGTCAATTCTAAATT
GCTTTTTTTAAAACTTTTTAATTTTTATGTTTTGATTTATATTTGAAATG
TTCTTTTCTATAAAAGAAACTTGTTTTGTTTTGAAAAGAATTCGAATGTC
ATTAATAAATACGATCGTTAAATACATTCTCGAAAATATTTCAAACAAAA
GAAAAGAAAAAGCAGAATCGGCCAAAGCTGGGCAGAAATTGAAATTACTA
AATGTAGATGGGCCTTAAATTTCAAAACAAAGGCTGAACAAAGTCTAAAC
CATGCTCTATTCGATCTGTCAATCAAAGCAAACTTATCGAGAACAAAACA
TTGCTTGCGAAATCGAAAGTGTGCAAATGGCGCGAATCCAATAGAACAAA
TTTGTGGAGCAAGAGACTAAAAGTCATAATTTTAAAACACAAACAAAGCG
AAAACGAAAGTGGTGACACACAGACACACAAAGCCAAAGCACCGCTATTA
ATATATAGATTAATGTCTAGCAGACTGTATCAGTATGCATTTTACTATTT
ACGAATTCCCCAGAAACCTCCAAATGTAATTGAAAGGAGTTTCTTTCAAA
AGAAATCTTTTACATATCCCCCAAATGTATAACATTAATTAGTAAACTTT
TGATTATGGAAATCTCACTTAATTGAATCAAAATAATAGACAGACTTTAT
GTTATGATTCTCTATCACTGACTCTTTTTACAAAGCATTGATGACTTTTT
GTAAGCTGTGTTTTTAACGACGGGAATAAAGATATCGACTATGACGCTCA
TCCAAGATCTTGGATGGTCGTCATGGTTACTTTTGTCTTCGCTGATTGCG
CGATGAATAGAATCTCGATTCGTCGGCACAGCGTAAAGCGTAAATATATG
ATTTTGAGCTGTGCTTTTCACGGTACTCTAATACTCGAGGTCGACACGAT
ATTTTTCGCAGCGAGGCTACCAGTCAACGCAGATGTGTTTGGACGTACTT
AGACTTAAGGTGAGGGTGTACTAAGGCTGTGTCTTTCTCCCAAAATACTA
ACTTAAGACTATAAATTTGAATTCACCTATTCGACCGTAGTCGCGCGGTC
AGGCGCGTGCCACTTAATTATTTAATCATCCTCCTAAACTCAATCCAATC
CTTTTTTGAAACCTTTTTCTGTTGTCTATAGGTGTGAAAGGACTGGGACG
GTTTTAGGGTGGTAAAATGGACAAAAAAAGCCAGTGCGGCAATTGGCGGC
TACGGTTGAAAAGGCGTATTTCCAATAATTTACAAAGAGATTAAAATTTA
GTTAAACTAGGTAAATTTAAGTAACCGTGTAACAAAAACATGTATAAAAT
CACCTATTTAAAAATTAAATGACCCTGCTATTAATATAAAATTTATTATT
TGGGAGTAACAAACCCAAGATGAGAGACAATGCGGCAAAAGTGGCCATTA
AAATCATCAGCATTTTATAACTCAAGATCACAATATTCCATAACAAGAGA
GTCAGTATCACCATCAACATATTACCATTGAGCATCAGAAATCCCAGTCC
TACTCCACGGTAGTGTGTTGGTAACAGTTCACTGATATATAAATACAATG
TCCATGGGCAAACGTATGCTAATAAACTTGTAAGATAGAGTATAATATTA
CTTGCGAGTTCGTTGTAATGTGTGCACAAGGTTATAAGGAATATCATCGA
CACCAAAACTTGTAGTCTGAATACACCTCTTGTCCCGCAAGTTGAAACGC
TTAGGGCGGCAAGGATAAGAAAAACAACGACGCAAAGGGCGGACAAAGGA
CGGAAAAAAGCGGGTAATTGTTCTTCGACGTCTGTGATTTGGCAATATGG
TGTCAATGTATTGTTTATTGCTATGGTGATATGAAATGTACTGAGTCCTG
GGAGTAACATTAATGCATAGATCTGGCGAGTAGTCGAAGCTATGGTCAAT
ACCAAGCCTAATAACAGGGATACAATGATGACATTCTCTGGACGCTTTCT
AAACATGAATCTCAAACTACCAAAAATGAAGTTTTTATAATTCATGGTGA
TCTTTTCTGGCAAACTTTGGCGACTGTCATCAGATAATTGGTTCAGTTTT
TTCACCACTTGATCGAAATCACCGGTACTGTTCAAATAACGGATACTCTC
TTCACCGGTGGTTAAAAGAAGGACCAGAACGAGGAGACCAGGTAAAAGTA
GAATTAAATGTCTGAAAAATGGTATTTTGATCCACGGTTTTAAATATATG
AGCATTGTTCCGATGAAGAGTCCAAAGGCTACGGATAGTAGCAAATATCT
ACTCCTTGTTTTCGAGGGAAGTGACTCTATGAAATGAACGAGGGAAATTG
TCATAAATCCGCCACACGTGAAAACAATGATAATCTTTGTTGCCAGGTCT
TCCCATAATATATCACCGGCTGCTATGGATATCAAACGAAAATAGATATA
AAGGAATAAGGTGAACTTCATCGTCAAAACTCGACCCTTGATGTCTGCTA
TTAGCCCGAAAACAAGGCTACCTGTTGCCATAGTAATTATCAAAACACAT
CGAATGATTGTAATCTCTAAAGATGAAAACTTGTGCTTGCATTGAAACTC
CGTGTATGAGATATCCATAAAGTTTGCCTCGATAAGCCAGCATGTTATGA
CAAGTGCTAGAAGAATGCATAGCTTGAAGATTTGGGTAACAGAGACACCA
AGATCGTTTAATACTTGCTCTAAAGTTCGTCCGCTTCGAACCATTTTGTC
ATATTCTGTTTGTTATACTTATACCTGAAAAAAAAAGAATTAATATTGTT
AGAAGGGCAAAACGAACAGGGTTTAAACGAGTTCGGTTAGATCGTCGAGG
TCACACAATGCTTACAAAAGGGTAGCGTGTGGCAACCAGTCTAAAACGCT
GAAAATTTCCAATCGATGAATCTGACGTTAGAGAAGACGTTTGTGACATA
ATCGGGAATCACACCGTTGTTGATCCAGCACAGGATATAGTAGTGACAAC
GCAACAGTCACCCCATTTCATTAACATATCATGATTGATAAAGATCCAAA
ACAAAGCGAAAAACAACCCCAATTCACCAAACTTTTCAGACTTCTGAATA
CAAGTTAATGTTTTCAAGAACCACAATAAGAAACCTTGCACATCTTTGTC
GAAAAAACTTGATAAATCGATTTAAAAACACACAAACTATACATTACAAG
AGAAAAGGGATGTGGCAAAAATACCTGATAGTCAAACGTCAAAAAAGACT
CTTTGATGCACATATATCGCGGTATGAAATTAATTTCCCATTTCCGCAGC
ACTTTTTTGTTGAAAAGCTAAATTGATTGAAAAGAAAATCTAATTAGACT
GTATTAATCTTTTCTGCTTTTGTCGATGTATATCCTGCGCATGCGCTTGG
GTTGATCAATTTGCAGGTTGTGTTAAACTGATTTTAAAGACACAACATTA
AAGTTTCCTGCAGGGCATTAAGAGAAGGATTAAAGTCAAGACTGATTAAA
AAATGGTTTTATAATACCTGAGTAGTGCCTGTTATCAAAATTCTAGTCGG
ATGACTAAAAATAAAGCTCATAAAAAACATGAATTTTCAGACATAAAAAG
ACAAAATATACTAAACCCAGAACGCAGAAATCGATCATAAATTTGATGTA
ACAGGGACATTTTCTCCATTAATCAAAATGTGACCTAGTCTACAAAATAG
ACAGATCCAGGCTTTTAGGCCTTACTCGAAGAGTAAGAGTTTTACGCTCG
AAACGAAGGAAGATATGACGTAGCCTAAATGTGACCTTATCATGGCCATT
ATTTGACCCCTAAGTTACCCTGTATCGTAAATATATAATTTCTACTCATA
CACGTTTTTTTTTTTATAAGGAACCTTAACTTTGCTCTGAGCCTGGAGTT
TCTTATTTTTACAGAGAATTTCAGTCTCAAAGTTCCTTATCGATTTCCTT
ACTACATAGGAAATTTTGAACTTTTTGCCCCTTGAAAGATCAAAATTTGG
TTAAATTAGTCCCAATAAGGTACATTATTTTCAAATCCACTTATTCTCAG
CCTGAGCAGTTCCTTAACAATTCCTTATTTTTTGAACCATTTTCAGCCTC
GAGTTCCTTATAAACATGTTCCTTATAAAAAAAAAACGTGTATATCCGTT
TACAGTTTCCTTGGGAAAGAGCCTCCGTTTGATTCAAAAATAGTTTTCGG
TGCACCACAGAGAAAATAATTTTACGAGAAAGGAAATAAATGATTGTCGC
CGGGATAATTACCCAAGTAATTTAGAATTTAATTATTATGTCAATCACGT
CTTGTAGAAAGATAAAGCGAAATCGGCAAATTATGTTGGATATCCATTGG
ATTTAAGTTGCGCCAGAGAAAGTACTGGCAAAAACTACTTCAGTTTGAAG
AGGAGGATTTGAGTAGGGGTGTTTCTTCTCAAACATAAAACTTTCGGGAC
TTTTATATTTCTAATGCTCTCTATAATACGAGTTTTGTTAAATACAGACT
GATACGCCTCTTTATCTTAGCAAGATGATCCCACCAGATATGATATGTGA
TAAGTTGTCAATATTGATTTCGAAGATGCTTTCGATACCATGGAGTATAC
TTAATATAAGTCTATTCATTGAGTTTGAACCCGAAGTGCTAGAAGCAAAT
CGTCAGCCTTTCCAAAGCAAGAAAAAGAGAAGCCTTAAAATTTTCGCCTT
ATTTCGGATGACGAATCTAGCGTTTGTATAAAAATCGAGGGGACAGCACA
ACTTTTGCAGTGCTTCAAATCGTAATGATATTCATCTTTAGCCTTCTGTT
ATGACTTACTGCGTATACCCCTGCGTTAAAAAATACACGAATGGGAGTTG
AGTTCGAGCTGAATAAAATGTGGAAGCCAATACATTGTATTGACACGTTC
ACAAAGACAGTCGATTAACATCTTTTAATTTAGTAAGTTTGCAACCGCAG
TCGAGGGTGATCCGAAGGCTCTTCTTTCGATAGCTAGCTAGCCGAATGTA
GAGGAGGGCGCCACTCCTTTCAACTTTTCAACAACTTTACACACCATAGC
TGGAAGATGCACCTTCATTATACCGCCGATAAAATATCTTGTAAACTCGA
ACCCCCTTCGAGGTAAAGGGTTGGTAGAAGTATTTATTCGAAATTACAGA
ATTGCTTTTTTTCTTATTTAGATGACATCTTCGCAATACTGGAGAAAAAC
AACTCCACTACAAACGTAACGCAACTAAAAATCTCTGCAGAAAGCGAGCT
CCATAAAAAGTTATTTGGAAATTGTTCTCTCGAGCTGACAAAGAACAAAT
TCTCACGTGAATGTACAATGTTTTCATTTCCGGACGAAACCAGTTCCATT
ACTGTCCGAATCGGGATGTCTTTGGTTCAGATTGAGGAATTCCATGAGTT
AAATGGCATACTCACCCTCCGAATGTACTATCGACAGGTAAGATTACCAT
TTTAGGTTCTTGTATCATGGTGGTAACTCTGATCTCATTTTCTAAATTCA
AACTGAATTACAGTTGACATTTTCTAATTCGACGTTACTGATCTATACAC
TCCATTATTCGATATTGTTAACCGGTTACTTTCTCGAAGCGGGCTACAAG
GCCTTTTGTGCAATGCAATTGGTTTATTGCGCATGACGACGGGCCTACAC
AGCACATAGTTACCCGTTGTTAGAAAAATTCATTGCGACGTCAGTTTTTT
CAAAGGAAAATGAACACTGCATTGACATCATTTTGTCTCAAATAATTACG
CATTATTGCCTAGCAAGCTTGGCCGTTACTTGACCTCGGGCAATATTTCT
CAGTACAGCCCTCACAAACTGGTCATTATATTGCATTAATATTGAGAGTC
ACCATCAACAAGAAACTCTCATAAAGGACGCTCTACTATTTGATACGCTC
TTTTATTTGGCGACAATTATAAAGCGTCAACTGTAGTGCAGAATTTTTTC
TCAGATTTGGTGGAACAAGAAACTGACTTGGGACCCTGAAGAATATGAAA
ACATTTCTGAGATCAATGTCAATCCGAAATTAGTTTGGTCACCTGATATC
TATATTTATGACAGGTAAATCTTCCGTTACAGTCAACTCAAATCCTTTAT
ATGACCTTTTTTTCTCATTGAATAGGCTTCTACTGCTCCCTCAATTGAGG
GTTCAAACACTCTTTATAAACGACACTACCTTCTTCGAACGATTGCAATT
CCATGACCTAGCTGGCACACAACGTTATTTGCAGCTTTTAGGTGTAAGAT
CGGGATAAGCCTTCTACCGGCAATATCATAGTGGTTTCTCTACCTAAAAC
GAAGTCATCATTCCAAAATTTTAAAGTAATATACTAATACAATATCCCAC
TAACCGAAATTCTATTTTAGTCGTGGCGAGGAAAAGATTCACGGTAGTTA
TTTGAACGTGGCAAATACGTTAATCTCTTTACGCCATGACGGCCGTCACA
TGTGGTTAGCGCCGTTTAGATCGGAAACGAATTGTCCGTTACACGTCATC
GATTATCCGTTCGACATTCAACAATGCGATATCAGGCTAGGGAGCATGAC
ACTAGACTCGAAGAAATTGATTGTGAAATCAGAAGCTCCTTTTCTGGACT
TGTCCATGTTCCACAGTAAGTATCATAATTGTTTTCTTCAAAATTCAATC
TAACACAGTTATTGTTACAGTGAAGTAGATAGAATCAGAAATTACTCAAG
AACATTCGAAAAAAATCGAGCGAAATATAGAGAAATAAAGAACTACCTAA
AGGGAACTTTTTTTGGCGGGAACTAATTTTGATGAGCGGCAAAAATCCTG
AAAATTTCTAATTTTGGCGAGAACTTATTTTGGCGAATGAGCAAAATATT
TAATTTTGGCGGGAAATAATTTTGGCGAATTTTGTCTAAATTCGCCGAAT
TCGCTAAAATTAGTTCCCGCCAAATAAGTTCCATTAAGGTAACTTGCAAT
CTTCAGTATTTCACAATTATTATTAATATCACGACACTGATTATTAGCAG
GTAGGACGAGAATCATAGATATGTATTTTTGAACATACTATTGACAGTCT
AAGCAATCCTAGGCAAATTTCGGCAAAATTGCAAAATATTTTGTTTTTAA
AATGAAAGCCCAGTAAAAACAAATCATTGTTGTCATAGACTGCAGTGGTA
ATAAAATTGTCTGACACAGGCTAATTTCAAAGCTTGTACTAACGACGTCA
TAATTTGGTTTACTTCAGTAAGGATATACAGCTTGATATGGATCAGCCTC
CATAGAGTATCTCTATGTAGAAAAATTTTATAAGAAATGCAATTACTGTC
ACTGAAAAGAAACATTTATTCACCATTCAACGCACCAAAGCAGAACACCA
TAAACACCCATCATTGAATATATAAAAGCACTTGGCAATCCAAAAAAAAC
ACAGGTACACTCTCACTCACTAGATTTTCAAATTAATGTATGTAAAACTA
AATTAGTTTCATTTCTTTTTCACCTTCAATGTGGCTTTGATATTTGTTTT
GTACCGCATGCTAAAAAGTTTGTCGTTACACCTCCGTCTCCATGCAAAAA
AGGATGGCCTCTATATTTAGTCATAACGAAAAACGTTTGGAACAAGACAC
GAGGCAGATAAAAAACTCCAAAATTATCGACACTCTTAAAGCTGTCTCTA
TATCCAGGCCCGGCGGAAGTGGAGAAATTTCAGACTCACAATTCCTATCG
AATTTTATCTCATTTTGAGCCTTCAGCCTTCCCACTTTTACAGTTGTTCC
GCCGGGCCTGATATTCAGAAAGTTTCGATATAACTGAAACGGATTTTTCG
GTGCCTTTTAATAATTTCAGCCTATTTTTCCTCTCCGTAACCACGAACGG
CTCCTAGTTCCCTTTGGCGACTAAATGATTTATAGCAATGTATTTTAATA
ATTCACAAGATCACTGACATTATCAATATAGCATAGTTCAATATTTTACA
GATCATTCCGAATGGAATATCCTATCTGCGAACGGACGGAACGAAATGAA
CTTCAAAAATCCGGACATGAACAAATTCTCAGAAATCATTTATGTTGTTC
GAATCAAACGAAAGCCATTATTTCTCATTACGTCATTAATCATGCCCAAA
TTTGGAATCACTCTGATCAGTCTCCTCGCTCATGTTATCCCGGCGGCATC
TGGTAAGAAATTGTCACTCTTTGTCCCATACAAATCAAAATGTAGAATAA
ACTTTTCCCTGTCAATTCTAAGTAAAACTTTACTATTTGTGCGAGTTTGA
TTTTTCCTGAGCTCATATACTTAAACTTAAATTCCCAATTTAATATCTAA
TTCTTACATTCATCTAATAAGAAATAAAATGCCAACAATTGGGACGATAA
TGTCGGCTCATAAACAAGTATATTTTATTTGACATTATTCCATATACACG
CTCTTGAAATTAGGGAAGTCTACTCAAAAGAAAACTATTGCGAATCTGTA
ATTTCTTTTCATCAATAGGCGAACGAATTCTGATGTTGATTGATTTGATG
TTAGTATTGGCTTTATTTTTGACCAATGTTATGGATATCATCCCCGGCGC
TGCTGGAGAGGTTCCTTTCTTTACGTACTTTCTTCTCTTGACATTGATTG
GGATGGTGACCAATATAGTCACCATGGTCTATACTTTAAGTATCTACTTT
GCTAATTGTACTGTCTTGGAAATGCCTCGCTGGTTACGATATTACGTTTT
AGATCATCTAGCACCAAGTATGGGTTATCGAGATCGTTATACAACTCCCA
AATGGATGATCAAGTTAATGGCTATTGAAGAACATTGCCAGAGAAACCAA
CAACAGAATCCAATAAATTCAATTCTCGGTAAAAGACACCCAGGACGTTT
GTGGGGAGCTACTGAATTACGGTCGAATGTTATAGAGATTGTAGATGATT
TATCGCAAGGTCATTCACTCTCGTCATTAAATTTATGCCTTTTATCCCAG
AAATTATCCCTGATACTTGATTGGTTAAAGGAGGAAGAGAGAAAACGGAT
ATTGAAAGATGATTGGTTACTGGTTGCTAAGGCACTAGATCAAGTGACAT
TATACATCAACTGCTCTATATTAGCGACAGTCATTTTTTGGTTCTTTTAT
AAAGCTTATAGTTGCTCACTAGTTAATTGAAATTTCCTGTAGAGATGACA
TATGTCTACAAAATGAATTTTGTAATTTGTTCTTTAAGTTACGTTAGAAT
ATTTGTTCTTTGCTTGCTACTTGATATAATGATACAAATCTGAAAGACTT
TTTTTCTATTAGACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041768XLOC_041768Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066802-exon-scaffold_46-1575043694:371951..372127TCONS_00066802-exon-scaffold_46-1575043694:371951..372127Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1575043694:365841..366106TCONS_00066802-exon-scaffold_46-1575043694:365841..366106Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1575043694:365214..365323TCONS_00066802-exon-scaffold_46-1575043694:365214..365323Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1575043694:364663..364907TCONS_00066802-exon-scaffold_46-1575043694:364663..364907Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1575043694:363126..363326TCONS_00066802-exon-scaffold_46-1575043694:363126..363326Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1575043694:362012..362809TCONS_00066802-exon-scaffold_46-1575043694:362012..362809Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1510915933:371951..372127TCONS_00066802-exon-scaffold_46-1510915933:371951..372127Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1510915933:365841..366106TCONS_00066802-exon-scaffold_46-1510915933:365841..366106Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1510915933:365214..365323TCONS_00066802-exon-scaffold_46-1510915933:365214..365323Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1510915933:364663..364907TCONS_00066802-exon-scaffold_46-1510915933:364663..364907Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1510915933:363126..363326TCONS_00066802-exon-scaffold_46-1510915933:363126..363326Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1510915933:362012..362809TCONS_00066802-exon-scaffold_46-1510915933:362012..362809Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1491911889:371951..372127TCONS_00066802-exon-scaffold_46-1491911889:371951..372127Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1491911889:365841..366106TCONS_00066802-exon-scaffold_46-1491911889:365841..366106Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1491911889:365214..365323TCONS_00066802-exon-scaffold_46-1491911889:365214..365323Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1491911889:364663..364907TCONS_00066802-exon-scaffold_46-1491911889:364663..364907Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1491911889:363126..363326TCONS_00066802-exon-scaffold_46-1491911889:363126..363326Clytia hemisphaericaexon
TCONS_00066802-exon-scaffold_46-1491911889:362012..362809TCONS_00066802-exon-scaffold_46-1491911889:362012..362809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:362012..372127 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.959446	0.718943	0.101183	0.0914596	0.0602566	0.0476156	0.455978	1.45903	0.763723	0.736965	0	0.819198	1.88759e-06	0.0208033	0.116439	0.311716	0.832245	1.31547	0.34653	0.154926	3.86183	3.20879	1.42768	2.29215	2.31743	2.59713	0.214439	0.0980808	0.123985	0.126321
Blast
[Close]
BLAST of TCONS_00066802 vs. Swiss-Prot (Human)
Match: ACHA4 (Neuronal acetylcholine receptor subunit alpha-4 OS=Homo sapiens GN=CHRNA4 PE=1 SV=2)

HSP 1 Score: 157.147 bits (396), Expect = 5.885e-41
Identity = 104/336 (30.95%), Postives = 170/336 (50.60%), Query Frame = 3 
Query:  228 QLKISAESELHKKLFGNCSLELTKNKFSRECTMFSFPDETSSITVRIGMSLVQIEEFHELNGILTLRMYYRQIWWNKKLTWDPEEYENISEINVNPKLVWSPDIYIYDSRGEEKIHGSYLNVANTLISLRHDGRHMWLAPFRSETNCPLHVIDYPFDIQQCDIRLGSMTLDSKKLIVKSEAPFLDLSMFHNHSEWNILSANGRNEMNFKNPDMNKFSEIIYVVRIKRKPLFLITSLIMPKFGITLISLLAHVIPAASGERXXXXXXXXXXXXXXXTNVMDIIPGAAGEVPFFTYFLLLTLIGMVTNIVTMVYTLSIYFANCTVLEMPRWLRYYVLD 1235
            + +  AE  L KKLF         NK+SR     S       + VR G+S+ Q+ +  E N ++T  ++ +Q W + KL WDP +YEN++ I +  +L+W PDI +Y++       G +     T   L HDGR  W  P   +++C + V  +PFD Q C ++ GS T D  K+ + +    +D   F    EW I+ A G             + +I Y   I+R PLF   +LI+P   I+ +++L   +P+  GE+I + I ++L L +FL  + +IIP  +  +P    +LL T+I +  +IV  V+ L+++  +     MP W+R   LD
Sbjct:   31 ETRAHAEERLLKKLFSG------YNKWSRPVANIS-----DVVLVRFGLSIAQLIDVDEKNQMMTTNVWVKQEWHDYKLRWDPADYENVTSIRIPSELIWRPDIVLYNN-----ADGDFAVTHLTKAHLFHDGRVQWTPPAIYKSSCSIDVTFFPFDQQNCTMKFGSWTYDKAKIDLVNMHSRVDQLDFWESGEWVIVDAVGTYNTRKYECCAEIYPDITYAFVIRRLPLFYTINLIIPCLLISCLTVLVFYLPSECGEKITLCISVLLSLTVFLLLITEIIPSTSLVIPLIGEYLLFTMIFVTLSIVITVFVLNVHHRSPRTHTMPTWVRRVFLD 350
The following BLAST results are available for this feature:
BLAST of TCONS_00066802 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA45.885e-4130.95Neuronal acetylcholine receptor subunit alpha-4 OS... [more]
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