TCONS_00066793 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066793
Unique NameTCONS_00066793
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3655

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066793 ID=TCONS_00066793|Name=TCONS_00066793|organism=Clytia hemisphaerica|type=transcript|length=3655bp
TAGATAATTAGATACTACAGTAGATAgtttcaacaatgatagaacacacc
gatataaacaaaattaaccagcgcttttttgtatctttctacttcttcat
ctttgtcgaagctctcaaagtcaaatagaattttaagcacataagatata
cTTGTAATTGTTAAATGCTGTTCTCGCTTTTGCTTCgggaggccccccca
gcggtttgcgtgatggcgtgattgggactttttcttgcgtgatagcgtga
ttagagatttttttggcgtgatggcgtgatcaagattttggcgtgatgcg
tgatagggcaaaaatttgaggcgtgatgcgtgatttgggctgtTATTCgc
tatattttgcgtgatgccAGATTTTAGCGactttcgtgatgcgtgataga
gaaaattattttgtgtgatggcgtgattaggggtgccccGGGGGGCCTCC
TACGggggagtgcatgacgtaactagCACCGCAaacaaactcgccttctg
ttgtcTGATCATATTGGGCATTTTGGTGTTACCACCTTCAAAGCAGCGGG
CGTCTTTATTATTCCAcaactctgtccaccattttaaatgagttaacaat
agatccaaaagggtgCCCTCATCAAGGAAGATCATTTGCTTTGGTCTCTG
GCTTTGGGAAGTAGACTAAGTAAtgtttttgatgtaaaatggtaacaaac
ttaagtttacaagtgtcatttagtttttgctggctgatagaatgacagga
tcctggatggcttCCCTAACTGTATGCTGCGGTGATGTTTTATGGCTTTC
TCTTCTCTTGATCCAGTATTAATTCGGAAACCTTCAATTCTTTTCAACTC
GaaaaaaatgcacaaaaattgACTTCCCTCCATTTTTTGTTATCTTACAA
AGTCATTTTTgagaaccacaagtgaaaagaaaagcaaaactgaCTGAAAA
GCTTGCTTAAAAATGAATGGCAGGTGCGGCTTTGCTTGTGCAAGTTTGAA
ATTCCGGTGAGTAATCTTGATATTTATAAGAATGTGATGTTTCTCAATGG
CTGCTGGACGTATAATCTCAAATTTGATAATGATACTaatgtaaaaaata
attatgcatgacatcATTTTATCACTTTCATGATTAGGAGATTttaagtt
tgtattttaatgaccagccagttAATTCATTTGAGCGCTATGCACGTTAG
CctacactgatgcaagttacctcaagttacctgatctcacagTATACGAT
CATGTTCTTCAAAACTTTTAATGTGTTATCGTGGGAAAAGAAAAGGGATT
CTGAATGAGGTACGTTTTTTTATTGTCAAGTAATTTTCATTATGTTTCTA
TGTCAACACTTTGAAGAGAAGTAAAACTGCTTTAGTTGGTCTGTAAATTG
GAGTCTATACATTCTATTTACCAGTGATGCAAGTCAGGGTAAAATTCGAT
TTGATGTTTTGTTGTTAACCCCCATCCTGATTTTactatatatttttgaa
tttgtgAGATGACAAATattgttgtaaaaataatttattgGAAGTGCAAT
TAGACTTTAGGGAACTGAACCAACAAAGTCAGAATTTATTATCAGTAATG
TTGCACTGGGTTTCAAACCTTTCTGGTGGAAAACGGATTTACTTCTGAAT
GTAAACATTACTAGTGCTAGaatagttgtttgggagaacgtgacagtcta
ttgaataacaaattactccagccAGCGCAAACAGGATCAATATTCACGAT
TGTACCTAGGTAACAgctgtgttgtaaaagacaaattAATTATTAACGAA
AATTTAGAGTATTCAACACTATCAATCTTTGTAGTGCAGTCTAAATGTGC
CAAAAGTCATAAACATTGTGCACAAGGgcgtaaaagcatgaaactttgca
caatggtagtttagaggtcaaaaatggatttaaatctcagacccaaaata
ttggcacctgtttgtgtattttacagaccagaacaggtttccaggctaaa
atgaaaatctttttctccaaagtatgtcatattacataccgttggaaagc
atgTTTCATGTCgttcagaaaaacattacaacccatatctgaaaatgaag
ccaataaaagttattggggaaggttgtttaaaaaatgaccgaaaatgacg
taattgctAATGTCAGCAAAAATTCCAGGACCACCCAAacgtgtttattt
ttgtgaaattcaatagaGTACCTCTCAGGTACTAAATACTATTGCGTGCT
ATCCCAGATAAACCCCTTGTTTCAAGCTACACAAACTTGAGGAGAGTTGA
ATTGAATCAAACAGTAATGCACACATAGCACTGGTCTTGACGCAATGAGT
GGATGCCACATAttctaagtaagtaagtatgacgttatcatttaaaaaat
ttctactGGAGTAATtagttcaaggtttgtttactttttatttcactgCA
TTTCTCTGTCTTATTCTGCAGTAGTAAGCGATTGAAAACTCctgattttt
tttatgtttttgttaatGAGTTATATGTCTGTACCCGGAAATATTGTGAC
CTTCTTGCCTTAGTGGAACAAATATTTCGAGTGTGTTTTTGACATTGGAC
TttcatttttagctttttattaTGCACCAGAAACACCGGACCAATTTACA
ACTCGTCCGCTGCTTGGATTCTCTGGtggtaaaaagttttcccaattgaC
AGCAAACATTTCCTTTCTGGTGCTTCAATGAGTCCGGTGTGTTAGCAGGG
TCGTTCTGATTGTTGTTCAACTTTAATAGCTTTTCTTTTttggattgagt
ttcaaaaactcaattttagaTTGAGTATTTTGTCCGGTATACAgacataa
aaaagtgcttagaaaaatccctgccTATAGCCTCCTCCATACCCTTAAAA
GGTAGgtttgaaaaatgataaatgCATTTTAAAATTATAGGTCACTATTT
TTTTGATTCTGAGCATTACTAATTTGGTCAGCTTTGGTCATCACAAAAGA
AGTGATGCCAAAATTGTTTGGATAGATCACGTGATTCATACCAAAACGAA
AAGCCAACTTCAGGATGGTGTATGGGGAAACTTCACACCAGCAGGTCAAC
TAATAAAGCAAGCTTTAGGAAAGGATTACTACGGTATTGGTATGGTGTAT
GGATCTGGCCAATTTTGGAATAAATGGCAACGTCCTGCTGAAAGGTTCAT
TGACAAAATCCCTGAATGGGATGAAAAAAGGGTCAGTTTTGAGAGTGAAA
TTACTAAATCCCTACCTGGAAACGGGaactatttcattgatttttctgcA
GCACCAAAGAATTTTAAACTGCAATATTTTATGTCAACACCGTTATCTCT
ACGGGAAAACGATTATTATATGCAAATCGAACCGCAGGAATGGGATGGTT
GCATCTATCTTCAAATTGCATCGCCTGCAACCCCAATTTAGTGACTAACA
AATGAGTCTTCTTGAAGTAAACCACAATTTTTCatattataaattttttg
tatcatatttgCTTTTTACTCTTTGCAACATTTATtatcatatttctcaa
aatgtCTTAGGTATTTATTGgctgatttcaaaatttatttgtccaggggg
ggggggggtcatgcagttactaTGTGAACACTATGACACTTAGTACGTGG
TGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_46:262176..267464-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066793 ID=TCONS_00066793|Name=TCONS_00066793|organism=Clytia hemisphaerica|type=transcript|length=5289bp|location=Sequence derived from alignment at scaffold_46:262176..267464- (Clytia hemisphaerica)
TAGATAATTAGATACTACAGTAGATAGTTTCAACAATGATAGAACACACC
GATATAAACAAAATTAACCAGCGCTTTTTTGTATCTTTCTACTTCTTCAT
CTTTGTCGAAGCTCTCAAAGTCAAATAGAATTTTAAGCACATAAGATATA
CTTGTAATTGTTAAATGCTGTTCTCGCTTTTGCTTCGGGAGGCCCCCCCA
GCGGTTTGCGTGATGGCGTGATTGGGACTTTTTCTTGCGTGATAGCGTGA
TTAGAGATTTTTTTGGCGTGATGGCGTGATCAAGATTTTGGCGTGATGCG
TGATAGGGCAAAAATTTGAGGCGTGATGCGTGATTTGGGCTGTTATTCGC
TATATTTTGCGTGATGCCAGATTTTAGCGACTTTCGTGATGCGTGATAGA
GAAAATTATTTTGTGTGATGGCGTGATTAGGGGTGCCCCGGGGGGCCTCC
TACGGGGGAGTGCATGACGTAACTAGCACCGCAAACAAACTCGCCTTCTG
TTGTCTGATCATATTGGGCATTTTGGTGTTACCACCTTCAAAGCAGCGGG
CGTCTTTATTATTCCACAACTCTGTCCACCATTTTAAATGAGTTAACAAT
AGATCCAAAAGGGTGCCCTCATCAAGGAAGATCATTTGCTTTGGTCTCTG
GCTTTGGGAAGTAGACTAAGTAATGTTTTTGATGTAAAATGGTAACAAAC
TTAAGTTTACAAGTGTCATTTAGTTTTTGCTGGCTGATAGAATGACAGGA
TCCTGGATGGCTTCCCTAACTGTATGCTGCGGTGATGTTTTATGGCTTTC
TCTTCTCTTGATCCAGTATTAATTCGGAAACCTTCAATTCTTTTCAACTC
GAAAAAAATGCACAAAAATTGACTTCCCTCCATTTTTTGTTATCTTACAA
AGTCATTTTTGAGAACCACAAGTGAAAAGAAAAGCAAAACTGACTGAAAA
GCTTGCTTAAAAATGAATGGCAGGTGCGGCTTTGCTTGTGCAAGTTTGAA
ATTCCGGTGAGTAATCTTGATATTTATAAGAATGTGATGTTTCTCAATGG
CTGCTGGACGTATAATCTCAAATTTGATAATGATACTAATGTAAAAAATA
ATTATGCATGACATCATTTTATCACTTTCATGATTAGGAGATTTTAAGTT
TGTATTTTAATGACCAGCCAGTTAATTCATTTGAGCGCTATGCACGTTAG
CCTACACTGATGCAAGTTACCTCAAGTTACCTGATCTCACAGTATACGAT
CATGTTCTTCAAAACTTTTAATGTGTTATCGTGGGAAAAGAAAAGGGATT
CTGAATGAGGTACGTTTTTTTATTGTCAAGTAATTTTCATTATGTTTCTA
TGTCAACACTTTGAAGAGAAGTAAAACTGCTTTAGTTGGTCTGTAAATTG
GAGTCTATACATTCTATTTACCAGTGATGCAAGTCAGGGTAAAATTCGAT
TTGATGTTTTGTTGTTAACCCCCATCCTGATTTTACTATATATTTTTGAA
TTTGTGAGATGACAAATATTGTTGTAAAAATAATTTATTGGAAGTGCAAT
TAGACTTTAGGGAACTGAACCAACAAAGTCAGAATTTATTATCAGTAATG
TTGCACTGGGTTTCAAACCTTTCTGGTGGAAAACGGATTTACTTCTGAAT
GTAAACATTACTAGTGCTAGAATAGTTGTTTGGGAGAACGTGACAGTCTA
TTGAATAACAAATTACTCCAGCCAGCGCAAACAGGATCAATATTCACGAT
TGTACCTAGGTAACAGCTGTGTTGTAAAAGACAAATTAATTATTAACGAA
AATTTAGAGTATTCAACACTATCAATCTTTGTAGTGCAGTCTAAATGTGC
CAAAAGTCATAAACATTGTGCACAAGGGCGTAAAAGCATGAAACTTTGCA
CAATGGTAGTTTAGAGGTCAAAAATGGATTTAAATCTCAGACCCAAAATA
TTGGCACCTGTTTGTGTATTTTACAGACCAGAACAGGTTTCCAGGCTAAA
ATGAAAATCTTTTTCTCCAAAGTATGTCATATTACATACCGTTGGAAAGC
ATGTTTCATGTCGTTCAGAAAAACATTACAACCCATATCTGAAAATGAAG
CCAATAAAAGTTATTGGGGAAGGTTGTTTAAAAAATGACCGAAAATGACG
TAATTGCTAATGTCAGCAAAAATTCCAGGACCACCCAAACGTGTTTATTT
TTGTGAAATTCAATAGAGTACCTCTCAGGTACTAAATACTATTGCGTGCT
ATCCCAGATAAACCCCTTGTTTCAAGCTACACAAACTTGAGGAGAGTTGA
ATTGAATCAAACAGTAATGCACACATAGCACTGGTCTTGACGCAATGAGT
GGATGCCACATATTCTAAGTAAGTAAGTATGACGTTATCATTTAAAAAAT
TTCTACTGGAGTAATTAGTTCAAGGTTTGTTTACTTTTTATTTCACTGCA
TTTCTCTGTCTTATTCTGCAGTAGTAAGCGATTGAAAACTCCTGATTTTT
TTTATGTTTTTGTTAATGAGTTATATGTCTGTACCCGGAAATATTGTGAC
CTTCTTGCCTTAGTGGAACAAATATTTCGAGTGTGTTTTTGACATTGGAC
TTTCATTTTTAGCTTTTTATTATGCACCAGAAACACCGGACCAATTTACA
ACTCGTCCGCTGCTTGGATTCTCTGGTGGTAAAAAGTTTTCCCAATTGAC
AGCAAACATTTCCTTTCTGGTGCTTCAATGAGTCCGGTGTGTTAGCAGGG
TCGTTCTGATTGTTGTTCAACTTTAATAGCTTTTCTTTTTTGGATTGAGT
TTCAAAAACTCAATTTTAGATTGAGTATTTTGTCCGGTATACAGACATAA
AAAAGTGCTTAGAAAAATCCCTGCCTATAGCCTCCTCCATACCCTTAAAA
GGTAGGTTTGAAAAATGATAAATGCATTTTAAAATTATAGGTCACTATTT
TTTTGATTCTGAGCATTACTAATTTGGTCAGCTTTGGTCATCACAAAAGA
AGTGATGCCAAAATTGTTTGGATAGATCACGTGATTCATACCAAAACGAA
AAGCCAACTTCAGGATGGTGTATGGGGAAACTTCACACCAGCAGGTCAAC
TAATAAAGCAAGCTTTAGGAAAGGTACAGCCTGCATATTGTCTTTGTGTC
TTTTTTTGTCAAATTTATATCTTGTTTGGTGTTTCAGTATCTAACATACC
CAATAACTGTTCCAACTTTAATTATTTTTTTCTTTCATATTTCATCTACA
CATTGAAACCAATTCTTTAAAGATTTCATCTCTTTTAAATTAATTGGGCA
TTGATCTATGGATTGAATGCACTTATTCAGGCATTACAGTAACTATAATA
AAGTGCAATAACTTTGTAAAACTATTTTTTGCAACAGAATGAAATTCAAC
TATGAATGTTGTATTGACAACCCAGGTACAAAAGATTGAAAGAGCTAATA
TTTGGGTTCTACATTATTCGACTGTCACATAGTATAAATAAATCATTTAA
AATGTCTGAACAGTTATTTCAAGAAGCATCTACAGCTTTTCAAGAATGGT
GTAAAAGAAATAGTGTTCCAGTTCTCTCGTTGGATCCTACAAGTACTGAA
AAAGATGATCTCAAATCAATAGTACAATCCATTGGAAATGCACGGTTTGT
AGCCATCAGTGAAGGGTTTCATAATTGTAAGGAGATGATGAGTTTACACC
ATAGGATCATTCGCCACCTGGTTGAAGAATGTGGATTCAACATTGTGTTG
AGTGAAAGTGGGTTCCCCGAGTCCCTTTATATCAATGATTATATTCGAGG
GAAATCAATACCAGAGGAGATTGATGTATGGAAAAATGGTTTAAACAAAA
TGTACAGTGCCTGGAGAGAGGGACAAGCTCTGATTGAATACCTCAAGAAG
AATAATAAAGATTATGGTAATTCTTTAGAGTATTATGGTGTAGATATTGG
AGGATTTTATCAAGACTGGGTCACTCCTTTCAATATAATTTTCAAATACA
TCAAGACTGTTGATGAAGACTATTGTAAAGATCTAGAGTCAAAATTATTG
CCATATCTCAACCAAATGTCCACAAATGCACGAAAAAACTATGCTGAAAA
TTTTGATTTGCACCAAAAAGCTTTACTATCTGCTATATTGGACGAAGCTG
TAAGTTACTTTGGCTCCAAAGCTGATGAGTATGTATCCAGAAGCAGTAAA
GAAGATTATGAAAAGATTCGACAGTCATTGACTTCAATGCAGTTGGCAGA
AAACTATTATCGAAATTATGATACTGTTTCTAAGAAGTATGTAGGTTTGA
ATGGAAGAGAGATTGCAATGGCCCAGAATTGCTTGTGGGTCTTAAACAAA
AGAAGTGATGCCAAAGTTGTTTGGATAGATCACGTGATTCATACCAAAAC
AAAAAGCCAACTTCAGGATGGTGTATGGGGAAACTTCACACCAGCAGGTC
AACTAATAAAGCAAGCTTTAGGAAAGGTACAGTTTGCATATTGTCTTTGT
GTCTTTTTTGTCAAATTTAAGTGTTGTTTGGTGTTTCAGTATCTAACATT
CCCATTAACTGTTCCAACCTTAATTATTTTGAATAATTGCTACCTTTTAT
GTAGCAAACCAGAGCAAACTGTAAAGCAAAAAGCAAATTGTTTTCTTAAA
ATTGTATCGCTCTTGAAGCATCGCTTAACCTTCAATACATATCTTTTATG
TTATGTGAATATATCTGTGAATTAGCAAATGATTTTATATGCTCCTCTCT
CCTGCAGGATTACTACGGTATTGGTATGGTGTATGGATCTGGCCAATTTT
GGAATAAATGGCAACGTCCTGCTGAAAGGTTCATTGACAAAATCCCTGAA
TGGGATGAAAAAAGGGTCAGTTTTGAGAGTGAAATTACTAAATCCCTACC
TGGAAACGGGAACTATTTCATTGATTTTTCTGCAGCACCAAAGAATTTTA
AACTGCAATATTTTATGTCAACACCGTTATCTCTACGGGAAAACGATTAT
TATATGCAAATCGAACCGCAGGAATGGGATGGTTGCATCTATCTTCAAAT
TGCATCGCCTGCAACCCCAATTTAGTGACTAACAAATGAGTCTTCTTGAA
GTAAACCACAATTTTTCATATTATAAATTTTTTGTATCATATTTGCTTTT
TACTCTTTGCAACATTTATTATCATATTTCTCAAAATGTCTTAGGTATTT
ATTGGCTGATTTCAAAATTTATTTGTCCAGGGGGGGGGGGGGTCATGCAG
TTACTATGTGAACACTATGACACTTAGTACGTGGTGGTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041765XLOC_041765Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066793-exon-scaffold_46-1575043694:264342..267464TCONS_00066793-exon-scaffold_46-1575043694:264342..267464Clytia hemisphaericaexon
TCONS_00066793-exon-scaffold_46-1575043694:262176..262707TCONS_00066793-exon-scaffold_46-1575043694:262176..262707Clytia hemisphaericaexon
TCONS_00066793-exon-scaffold_46-1510915933:264342..267464TCONS_00066793-exon-scaffold_46-1510915933:264342..267464Clytia hemisphaericaexon
TCONS_00066793-exon-scaffold_46-1510915933:262176..262707TCONS_00066793-exon-scaffold_46-1510915933:262176..262707Clytia hemisphaericaexon
TCONS_00066793-exon-scaffold_46-1491911889:264342..267464TCONS_00066793-exon-scaffold_46-1491911889:264342..267464Clytia hemisphaericaexon
TCONS_00066793-exon-scaffold_46-1491911889:262176..262707TCONS_00066793-exon-scaffold_46-1491911889:262176..262707Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:262176..267464 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.48163e-05	5.36993e-06	0.000853638	1.28528e-05	1.62182	1.12495	1.03669	1.60258	0.859267	1.05192	0.321337	0.79626	0.971244	1.54742	0.769561	0.930653	0.253504	0.947477	0.000103678	1.19022	0.000122322	0.000200437	1.29919e-05	8.39738e-05	1.81587	1.74353	0.529921	3.42354e-05	0.00686914	0.235782
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066793 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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