TCONS_00066772 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066772
Unique NameTCONS_00066772
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066772 ID=TCONS_00066772|Name=TCONS_00066772|organism=Clytia hemisphaerica|type=transcript|length=722bp
AATGTTTGGTGATGAGTCAGGAGGCTCACAACAAGAGTTGACAGGCCGTG
AAAAACGAAACCGCAGAAATAGACGCGAAGAACAAAATGGTATTCCTGCC
AACGAAGGAGTGCATCAAAAATCCAAATCACGCGTCCGCTCCAGTCGTGA
TCGCTTATCGTTCGACCCTCCTCCGTACGATAAAAATGATCCGAATGTTG
TTTCAAGAAAGAAGAAACAAGTACGCAGGAGGAGTGACTTCGAAAACAAC
GATGAGCCTCCTGCTCGAAGCGCCACGAAGAAACAGCGTACAACTCCTCA
CCGCCTTCCACGTTCAGTCAGTGAAGAAGTATTGGCGTTAGAAGGGCGGT
TCAATCCAACACCGCCCACAAAAGAAATGGCGGCGCACGATGAAGAAAAT
GTGAAATCAAGACGCTCAAAAGTACAACGATCAAAAGATAACGATTCATC
TTTGGCAGACCTTCCACCTTCTGGTCGAAAATCAAACACACGAAATGAAA
ACAGAAAGAAACGAAAACCAAGGAGTACAGTATTCCAATCGGCGGATGAA
GAGAATTATCAAGGAGACTGTGATGATGAGATATCAGAATATTTTCCTGT
TGACAAAGAAGATATAATCCATAATACAGAGTTGAGTCAAAGCGCATCAC
GAATCAATAATGTCATTGCACCTCAAGCTCTGCCTAGTCAACCCAACGAC
ATTCTGTTCATCGAGAAGAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_46:396967..399728+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066772 ID=TCONS_00066772|Name=TCONS_00066772|organism=Clytia hemisphaerica|type=transcript|length=2762bp|location=Sequence derived from alignment at scaffold_46:396967..399728+ (Clytia hemisphaerica)
AATGTTTGGTGATGAGTCAGGTAAGTTCATTCTCTTCTAATACAGCATCA
CAAACATTTTCTGGGATATGTGATagtttgatttatgatttactGAAATT
TGTAGCTTTGTAAGCAGTTTTTTTATCGTTTTATTGAAAATCCCATCTTC
TCGAAGCGAAATTCCCCAATCGCTGTTGTGACAATGATTCATCCATATCA
TCATCTCAAAAATTATAGATGCGTTATGcttaaaaaatttgttcaattgA
ATAAGTCttataaaatattaaaacactttttgtattttacatcatATACG
TCACTACCGTAAACTGTCATTACCGTAAATTTTGAATACCGTATTTAACT
AACAAACAATACTCTGTGTGCGTTTCATCAAAATATTCCCAGTTCAGAAA
ATCACGAGTTTATCACTACCAATgccaatttaatttttttgttaagaCCG
GATATGTAGTCACTGGGCAAAATTATATCGACTGAATACATGCAATAGAT
GTGTTGGACTTTAAACTTATTGTTTTTGTAAATTACCTAATGTGGATATA
AAAGCCTGGATATTCCCTGTGCCCAATCCTTTGATTGAACTGCTTGTATA
AATCGTTTTCTCCAATTTTAGTTAGTTATAAGAATATAAAGCTACGCGTA
CGTAAATATCTATAAACCTCTAGATGATGGATAGAAAATTGAAATACTTA
ATCTATCTATCATGTTGGTTGATCGAACCCTCTGTAGACATATGTATGAA
CCCCTGTTAATCGTTTTAAGTAGGATGCTTAACAACTGTCCAATTTTATA
TAGGAGGCTCACAACAAGAGTTGACAGGCCGTGAAAAACGAAACCGCAGA
AATAGACGCGAAGAACAAAATGGTATTCCTGCCAACGAAGGAGTGCATCA
AAAATCCAAATCACGCGTCCGCTCCAGTCGTGATCGCTTATCGTTCGACC
CTCCTCCGTACGATAAAAATGATCCGAATGTTGTTTCAAGAAAGAAGAAA
CAAGTACGCAGGAGGAGTGACTTCGGTAAGCATTCACTAACCGAATGAGT
TTCGTCAGTCCACCTAATGAATAGATGAATGAAGTATGAGGAGAATGATT
CTATAGAGGTTACCGCAAACTTTTACTACAATGATTTGCGGATCGGTAAA
GGTggtgaaaacatacaaaatATTAATCTTATTTCACAGTAGAAAACAAC
GATGAGCCTCCTGCTCGAAGCGCCACGAAGAAACAGCGTACAACTCCTCA
CCGCCTTCCACGTTCAGTCAGTGAAGAAGTATTGGCGTTAGAAGGGCGGT
TCAATCCAACACCGCCCACAAAAGAAATGGCGGCGCACGATGAAGAAAAT
GTGAAATCAAGACGCTCAAAAGTACAACGATCAAAAGGTTTGGACTTTTC
GATTGACAGCGTGCTTCATTCGAAGTAAAGCAAATCTTATGATTTATTTT
CCCGCTTTCTTCTCCCAATTTTTGGACTGATGTTTGGCTACGTTAATCAA
TAATAGACATGTGTTTTCAAGTTAAGTAAGTCTTAATGATAAACCCTATC
CGATCATTATTTTAGATAACGATTCATCTTTGGCAGACCTTCCACCTTCT
GGTCGAAAATCAAACACACGAAATGAAAACAGAAAGAAACGAAAACCAAG
GTTCGTGCTTCACATTGTTCATTGCGTCATTTCCTGCGGATGTTATCGAC
tacaaagattaaaaattatCGATTAcagagattaaatttcgcgagctaaa
aaaatcgcgaaattttctggatttaatttcgcgagtcagagttttgaaaa
atttcgcgtgaatttaatttcgcgaaaaagcctgaaaacagctgaaaaat
agccatttttttgCCACAAATGGAGACTTTGGACTGGTTTCTCCGCCGAA
AAtacgattttaaaagttttgtggtggatttgatttcgcgagtcaggaat
ctcacgcattttcgcgagttttaattttgcgaatatggcaaaaattcgcg
aaatcgtgaaatttaatctcgcaaaagttaatccgattaaagtatacGAA
AAAAACAATAACTCCCGTCTTTACATTTGCTCCTCTCTGATGAGACTACT
GGCATGTACAGTCTGTAATATTTTCTTCAACCTAATTATCCCCTTGTAAA
TTCCGAATTATATGGATgcaaggctcgaaataacgatttcaagtgggtcg
gacaaaatgtccgatcagggttgctttagcttgaaaattatgatttttgg
gtcggacatgaagctatgtgggtcggacaatgtccgatgtccgaccgtta
ttttgAGCCCTGATGGATGTAACTTTGAAGAGATAACTCATGCATTTCTT
CACAGGAGTACAGTATTCCAATCGGCGGATGAAGAGAATTATCAAGGAGA
CTGTGATGATGAGAGTAAGCCAATGATTTTTTAAGAATACTTTTATGAGC
CAAACTTGGTGAAAGCAACATCGTATAACAAACAAAGAAAAGGCAAAAAG
GAAGAATATGGAAACTTTCATGGAAGTCCTTGTGAACTCAGTCAAACCTC
GTtcttaaaaagttataattgcgttaaatttatgaaaataatgtAATTTA
TCTCTTCATTTCCTTTCTCAGTATCAGAATATTTTCCTGTTGACAAAGAA
GATATAATCCATAATACAGAGTTGAGTCAAAGCGCATCACGAATCAATAA
TGTCATTGCACCTCAAGCTCTGCCTAGTCAACCCAACGACATTCTGTTCA
TCGAGAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041757XLOC_041757Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066772-exon-scaffold_46-1491911889:396967..396986TCONS_00066772-exon-scaffold_46-1491911889:396967..396986Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1510915933:396967..396986TCONS_00066772-exon-scaffold_46-1510915933:396967..396986Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1575043694:396967..396986TCONS_00066772-exon-scaffold_46-1575043694:396967..396986Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1491911889:397770..397991TCONS_00066772-exon-scaffold_46-1491911889:397770..397991Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1510915933:397770..397991TCONS_00066772-exon-scaffold_46-1510915933:397770..397991Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1575043694:397770..397991TCONS_00066772-exon-scaffold_46-1575043694:397770..397991Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1491911889:398159..398353TCONS_00066772-exon-scaffold_46-1491911889:398159..398353Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1510915933:398159..398353TCONS_00066772-exon-scaffold_46-1510915933:398159..398353Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1575043694:398159..398353TCONS_00066772-exon-scaffold_46-1575043694:398159..398353Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1491911889:398532..398616TCONS_00066772-exon-scaffold_46-1491911889:398532..398616Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1510915933:398532..398616TCONS_00066772-exon-scaffold_46-1510915933:398532..398616Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1575043694:398532..398616TCONS_00066772-exon-scaffold_46-1575043694:398532..398616Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1491911889:399322..399380TCONS_00066772-exon-scaffold_46-1491911889:399322..399380Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1510915933:399322..399380TCONS_00066772-exon-scaffold_46-1510915933:399322..399380Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1575043694:399322..399380TCONS_00066772-exon-scaffold_46-1575043694:399322..399380Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1491911889:399588..399728TCONS_00066772-exon-scaffold_46-1491911889:399588..399728Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1510915933:399588..399728TCONS_00066772-exon-scaffold_46-1510915933:399588..399728Clytia hemisphaericaexon
TCONS_00066772-exon-scaffold_46-1575043694:399588..399728TCONS_00066772-exon-scaffold_46-1575043694:399588..399728Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:396967..399728 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.84343	6.39276	1.86111	1.37797	11.9389	4.66274	8.54859	10.8292	5.9939	7.86889	8.68292	6.70106	5.95119	3.22192	5.56667	10.3529	5.51778	5.28994	2.07991	3.18142	2.79604	3.07496	11.218	11.7033	12.2924	12.5244	0	1.80283	15.6183	12.5246
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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