TCONS_00066768 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066768
Unique Name	TCONS_00066768
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2232

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_46:335672..352464+

transcript sequence

>TCONS_00066768 ID=TCONS_00066768|Name=TCONS_00066768|organism=Clytia hemisphaerica|type=transcript|length=2232bp
tgtcagcaaaataaAATAACCTAACTGAATCAGTTTGGTTAGAACTATCA
GTAAATCGCAAAGGATCGGGAACAATTTGTAATGTTATGAGTTTTTTCAA
CATGGCCGCCCGTTGAGgatgttttgaaattaattttagttTGAGGTGGC
TAACATTATGCGTTGCACATTTATTTTGAATGAAAGCAAAATTGAGCTAG
TAGTAAAAAAATGATCTTTATTTATGAGTGCATttgataaaaagacaaaa
tggtTGCATTAGAATGGCAAATGGCCATCAATTGGGTCCGCTCTACAGAC
ATTGAACCTGCAAAAAAACAAGCTCTCAACAAAATAGACGACCTTCTGGA
ATTTGCTCAATCCTTACGTGATGGCTATATTTTGTGTCTTGTTGCTAACT
CTCTGAGGCCAGGAACTATAAAGGATATATCAAAAATTAACAATGTTAAC
ATGCATGagTTCTTATGCAACCGGAATATCAGGGCTTTTTTGAAAGCATG
TACAACTGTTTTCAAGCTTGATGACAAAAAGCTTTTCAAAGCAAAGGAAC
TTTATGAGGCTACAAATTTTGAAGCTGTTATCAAAACATTGTCTCATTTG
TCAAAAACCTCGATAGCAAAAGGAGCAGGCCTAAAACCATTTCCTCCAGA
CGATTATAAGAAACAAAATCACCAGGAGCAAGAAGAAGACATCTATGGCT
CCCTCGGTGAAATATTAGAGGagagagaagaaaaaacagaTTATTACAAT
TATGATGAACAAGAAGAGGATATATATGATCATGTGGAAGTATCTGAAAA
GATCTACGATGATATTGTCCAATGCACACGACAGGCACATGCAGCTACAA
AGCCAGCAGCATCAGATAAGCGTTCACATATCGTAAACGAGATTATTGAA
ACTGAAGATACTTATGTAAACCATTTGAAAGTCATGGTGGAGcAATATAT
AAAGCCACTGAAAGCTCACATGTCTTCTCAAGACAAAGAAACTATTTTTA
TCAACACAGAGcCCCTTTATTTATTTCACATGACGTTTAAAAGAGAATTA
TCAACTAGGAGAACAAGTACCAATGTCAAACTAAATCTCAATGCATTTGA
TAAATATaAAGATAAATTTCTAATATATGCAACATATTGCACAGGATTAG
AAGAAGCACAACAACATACCATAGAATTATCAAAAGAATCTGGGTTCAGG
GACAAAGTTGAGcAATGCAACAAAACAGCAAAACGAAAGTTTCCTTTACA
AGAACAGTTAATGATTCCGTTCCAAAGAATATTGAAATATCCTTTATTAC
TGAGGGATCTGAACAAACACACACCTGAGACTCATGAAGATAAAAAGGCT
GTTGAACAGGCTTATGACCTTATGGATGATGTGGCCAGATACATTAATGA
ATACAAAAGAGATGCAGAAGCAGTTAAAGTGCTGGCGCAAATCGAAGGAA
GtATAAAATATGAAATGCAAGCTCAGGGGAGTAAAGGCGGGCAATATGGA
CGCTACGTTAAATGTGGAGAAATTCAAGTCAAATTTGACTCCCAAGAAAA
GAAAGTAATAAAACGGTTTGCCTTCTTGTTTCAAAAGTCTATTTTACTGT
GCAAACAGAGAGGGGACTATTATGACGTCAAAGAAATATTTGATATGCAG
AAATTTAAAATTGCTGACGTACCTCCAGTTGGAAAGGGCAAGTTCAGTCA
AGGTTGGTCCATGCAGGCACATGCTCCCGATGGTGTAACAGAACATAAAA
ATTGCACCATGTTTGCGAAAACACAGCAGGAGAAAATCAATTGGGTTTCC
GAAATTTCTAAATGCATAGAGGCGGTAACTTTATCACAATACGAAGGGAA
GTTGGACAAGCATCAATTTGAACTTACAACCTTCGAAAAACCACAATGTT
GTACTGTTTGTAACAAATTACTAAGGGGTCAAGTCAGTCAAGGCTATAAG
TGTAGCAACATTGaatgTGGAGCTATCGTACACAAAGACTGTTTGGTAAA
ATGTCCGAGATGTAAGATCGCACCAAGTCGTCCTCTAAACCCTAAACCTA
CCATACACTTGAGACCACGTGATGCACGGCCTAGAATCATTCCAAACGCT
CACAAGTCACCACCAGCCCAACAAGTTTCACAAATGCAGATCAGCGACTC
CTTCTCTAAATACCACTGGTaagataattgtttttatttgtgCAGAAGTA
AGTGCTGTTATTTTTTACaaggacaatttttt

Run BLAST on NCBI

transcript from alignment at scaffold_46:335672..352464+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066768 ID=TCONS_00066768|Name=TCONS_00066768|organism=Clytia hemisphaerica|type=transcript|length=16793bp|location=Sequence derived from alignment at scaffold_46:335672..352464+ (Clytia hemisphaerica)
tgtcagcaaaataaAATAACCTAACTGAATCAGTTTGGTTAGAACTATCA
GTAAATCGCAAAGGATCGGGAACAATTTGTAATGTTATGAGTTTTTTCAA
CATGGCCGCCCGTTGAGgatgttttgaaattaattttagttTGAGGTGGC
TAACATTATGCGTTGCACATTTATTTTGAATGAAAGCAAAATTGAGCTAG
TAGTAAAAAAATGATCTTTATTTATGAGTGCATttgataaaaagacaaaa
tggtTGCATTAGAATGGCAAATGGCCATCAATTGGGTCCGCTCTACAGAC
ATTGAACCTGCAAAAAAACAAGCTCTCAACAAAATAGACGACCTTCTGGA
ATTTGCTCAATCCTTACGTGATGGCTATATTTTGTGTCTTGTTGCTAACT
CTCTGAGGCCAGGAACTATAAAGGATATATCAAAAATTAACAATGTTAAC
ATGCATGaggtaaaaatgttttttttacataTAAAAAGGtagttaaaggt
tttttttacatATGATAGTCCATTACGCATTATAGAGTATAtgttattat
attttataatattCTAGCCGGTACTTGGCGTTGCACGGCAGTTTAGctgt
tgctgaacgcatttaaagtcctttggatgttgggaaggtggcttaaatta
gatttgatttgaaattagatttttaatttgtggcaaaaatgatcagaaag
ggTATCATTTAAATAACACTTATACTGGTGACCAGCAACGTCtaagacgg
ctctgcaattagatatttttctcgcttcgaTTGCTTTAGAGGGGGGTCCC
CAGTGCACGAACgccaaacttatttttcacttttttcacttacttttagt
ttttacataaatccttttcGACCATCTTGTAGCCTTGTAGACAAGgttga
agtccttctttcagtttgttttcactttatttgaagccttcagggctcga
aataacggtcggacatcggacattgtccgacccaattgttgaaatgtccg
acccaaatcgattctagtcggacatcatgtccgacccaattactttcggt
gccttcaaaaaatttgtcagatgcgttgtgaaatttccaaaagaaattat
aatttacataaaattagtaacttctttatttatatacacacaaaaactct
caaagttgCGATCATTAGTGTTCTTAGATATTAATTTTGTGTGatgcttt
ttctcaacaaatgaaagcatgcttcaagtaaaaatcatgggcttctgacc
attaattggcatttgtttagcttcttcgtNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNcccattttactttaaaagccttag
gacatgtccgacccaaatcaatttttgatcggacaatgtgtccgaccacc
taaatatcgttatttcgagccctgagCCTTCTTCTTGAAATAATAAGTGG
TTAAAGCGAGCGCTATTCGGACCTGCAGTCCACGAACGAGGAACCAGTGC
ACTAAcgatcttttaaaagaaaaaattagagctccgctcgcaggtaatac
tttaaaggggaattaacgtttcaaaattgttaacaaataaattacagatt
caaatagagctcattgagacaatttcaaatatatatggttTATAGGGCTT
TAATCTTCTACATCCGGGATAAGAGTTGTTTGAAAATTCCCTTGCGTTGC
TATGGATACGAAAAATGTGACGTAGCACACGCtctgtgtttctctttttt
ataagggaagagtggtgaatgatgatttaaaatgcagtttttgagtttct
ttttacCGTTAGAAAGTTCACTGCACATTTGGAATACTAACTAGACTCTC
CTAGTATTATTTCTTCAACGTTTTGCTACAACtactctaaaaaagattaa
tttcttatgttttttatctcttttacaACCAAATAGAGTGTAACAGTAAG
AATAGTTGGGGCGcatgtgacgtcacaaaatcaACAGACGGGGAGTTTTT
CTCCATTGTAGAGTCAAAATTGTGAGAAATTAAAGATTGAATAACTcaat
gaataaaagacattatgaagtggttctttttttgttcgatcacatttttc
ttcctctttaatgtttcgaaaaaaaatctcagggttaattccaaacgtta
attcccctttaacTCTCTTCCaagatgatacaggggtatttgaacttttc
gaAACCACGcgctttttcaccaaaaaagcgtctttattataagaacttta
gcgttttactaacctgtttatttttgtaaatattttcttgtcgtccattt
ttttgttttctttttcaagttttgctcatcgaaaagcgcgacaatgtagt
gtcttcttttttaattgagatcgccagcgctttcgaatgttttgacgttg
aaatgtcttcattttgaatatggtgttcGGATCGTTCGCAGACTggaacc
ttttttatatcaactaccgtgagtggtcctaaatccgacagccctgccta
aatccaacgtggtctttcaaagatacaaactaaaataaaaaaaccctttt
gctgtgacgcaacgaaaatACCataagtgtcaactaaactgggaAATTTG
ATGCAGTAAACCAGTTAAGAACCAAATAATTAACAATATTTGCTTCTTAT
acgaaacatatttttttttgcaatatatATGTCAAACATCATAAATGata
ataaaaggtaattacatTCAgacttttacaactcacactttttaattaca
ttattgacNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNAACTTGGAGAAggagtgtttgtaaacatagaattttttttcataa
cctttatttggggggtcggaattaggcagggctgtcggatttaggaccac
tcacggtactggtgatatgtttctattgattttgaattaatataatgagc
taacatgtttcaatgaaattttgtgtgatggaagataacaggtttttaaa
agaggaaagtcattttcagaactcttcttgcgcaaattttcttataaaaa
acattttctcttgcgatcagccatgtttacaaaaatcccgaATTTCGTGA
TTTTATTACTTGGCCTCGTTCAAATCAGTTTGGTGTTGTTCTGTAGTGCt
ccgtttattttaatttttggagagattgcaaGGGATAGTTTTaggattct
gctgcacaaaggaagttctatagaagtttgtttttggttgtttttttcaa
gttcaaagacgcttgttcgtgcactggggccgttcgtgcactgggacCGT
TCATGCACTGGGGCCGTTCATGCACTGGTGACATGACTCtacatttgccg
tagttcttgatgatATTAGGAGGGGGGTTTCAGTGGGTACctgattccgc
aattccgccaattttttctccaatttccgtcaaaccgtcttaaattgaac
caaaattccgtcaccgaaaattcctttgaatttCAATATNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNTCCGcaaatttggaatatcttt
taccaattccgaaattccgcaattttttttgctaaattccgtttttccgc
actaaaattgtctaattttccatCTCCGTCATAGAACCCAAtctccgtaa
ttccgtctaaattttcgccaaattccgccactccgtccgaaaaaagagcc
gattccgctcctccgccaaacgtgaaaccccccccttaggaaaactttga
taaCAAGATTTGTTGAAAAAAGGCAGCCAGGGGTACTTTTGTTCCatcct
taagggtgccttttttgaaacatggcagtccCTGTAAGGGGAAAACTTCT
GAAGGGATTTGTGAAAAAATAAACAGGCGCCTTATaatgaaattaatatt
ttcaaaaactacgAGAAAATTTAacccaagccaaccttgaaaactaattt
gaagaacaacttACAGTACCTAGATCTGTGCACCATCAAAAGTATATTCC
CTGGAAATTTgctggacctcaaacactgagatctttattaaagaaaaatg
gaaacTGTAAAATTCTCTCAGGAAATGTTGAATTTGTAAATTAACAGTAA
GGATGCTCATCCCTTTAAAagaacaataatttttttagtgGCAGTTAGGG
GCATTCTTCATTGTTGAGGGACCTCTGAAAGTTTATCTACGTGAATTGAA
TGCTAAAAAGATGAGGATTTTATGTCTTATTATGGTCCTATGTAGACATC
CCAtataattctgacaccctttttaGAGATAGGGTCATTTTTATGTAAAT
GTTTGAACAGTGTCGCTTAAGCTGAAAAATTATAATATGTTGGTTAGGCA
GTAGTTTGGGTCATAGAATGTCTGATGTCCAACAGTAGTAGTTTTAAGAC
TTGAAAAAAGGTTAGATATGCCCTATCCAATTAGTCTTAGAGTTCACAAA
ATTTATGTTATTAAATATTATGTTAAGTTGATGATTACATCTTTAAAATA
CctctttttgatgattttcgtATCTGTGGTTTCAGCTATACTTGTAATTT
TGTTAGGTTTAACTGTTATCGatcatattttgaatatttttctttacctt
GATCATTTTCAGTTCTTATGCAACCGGAATATCAGGGCTTTTTTGAAAGC
ATGTACAACTGTTTTCAAGCTTGATGACAAAAAGCTTTTCAAAGCAAAGG
AACTTTATGAGGCTACAAATTTTGAAGCTGTAAGAATATTACTTTATATG
AATTTATGacattttaaaccttttttaattcaatgcTTTTTGGCATTTTA
TCATTTAAGAATAATATTATAGTTGTGTGGTCATTACACTTAAAATTGTG
ACGTAATCTTCCCAAATTAGATGAATTACATACAGTTTGCATGATTTAAT
TTTTAACCACAACAAAAGGATTATTTGGTTACATGATTAAAAACTAACAA
AGGCAATAGACAATAAAAAGTTACAATAATAGGCTTCTAGACcagtgttt
ttgaaaaaatgaaaaattaaactgtTACAAGATGttgtaaaatgttttta
tcacTATTAGTATTAGAGAATTCTGTTTCATTTTTGCTCTACTCCTTTTA
GGTTATCAAAACATTGTCTCATTTGTCAAAAACCTCGATAGCAAAAGGAG
CAGGCCTAAAGTAAGTATTAGTAAAGTAATTAGTAAAGCTGaattttgcc
ttatttttcCCAGTTTCTCATTGACATTGAAGGAGAAAAATCCAAGAATT
TCTCCAGCTGCTATTTTAATCTACTTTTAACCaatcataattttatttac
ctttcccAAGCCtcaaaataacaatttcaagtgggtcggtcaaaatgtcc
gatcagggttgctttagcttgaaaattatgatttttaggTCGGAAatgaa
gctatttgggtcggacTATGTCCAATGTCTGATCGTTATTTCGAGGCCTG
CTTTCCTACTACTGTACAGGAAAACAGTGATAACCAAAGTGAAGTGATAA
ACCTCCCATACAAGACAGATTTTGCCANCTGTACAGGAAAACAGTGATAA
CCAAAGTGAAGTGATAAACCTCCCATACAAGACAGATTTTTTCTGACGCT
GTGTTTTGATGTACTTTAACTGTATTTTACAAATCTAGACCATTTCCTCC
AGACGATTATAAGAAACAAAATCACCAGGAGCAAGAAGAAGACATCTATG
GCTCCCTCGGTGAAATATTGTAAGTTTTAAAAATAGTATtgaatacctta
ttacacaaatgTAAGAAGGCAAGTTTTTGATATTGACACTACAAGATATT
ATCTTTGCTCTAAAAAAGTTTGTTGAAGTTTGGATTCATTCCTATCATTG
CGTgttatatcagcataatttatTTCATTGATGAAAATGAGTTTCtggaa
attcaaaatatcacttTTTAGAGAGGagagagaagaaaaaacagaTTATT
ACAATTATGATGAACAAGAAGAGGATATATATGATCATGTGGAAGTATCT
GAAAAGATCTACGATGATATTGTCCAATGCACACGACAGGTAAACAAAAA
CTATTGAAGTGATCCAGTTTCTTCATTATTATGAATACTAATTTGTTGGA
TCCAGTGTTCAAAGTTTTTCCGTCTTGGGCAGATTTCCGTCTCAGCGAGG
TGCCAAAAGAGGCTTTTCTGtctccaaattcaacaaagtcCATTTCCGTC
ATTcaacaaaaatcttcaaatcatGAAGAATCTGGCCAGATTTGTTGTTA
AAAGTCCATTTTCTGTCTGTGATGAAAACTTTACTTTGACCACTGCCAAT
CATAATATGAAAAGCTTTCCTAATGAATCTCtattttatgacaaaaaatt
atCTTATTCCTACTAGGCACATGCAGCTACAAAGCCAGCAGCATCAGATA
AGCGTTCACATATCGTAAACGAGATTATTGAAACTGAAGATACTTATGTA
AACCATTTGAAAGTCATGGTGGAGGTAAGTTAAAATGGCAATTGAATAAT
TCAATTGCATTCTAAGGCTTTCTCCATAGTAAGTTCTGGCATCTCTGCCC
CAAGTTTCCTTTATAATAAGTTAAAATTTGAATTGGAATATAATTGTTAG
GCTgatatcaaatatttcaatcatTCATTTTTTGAATCTAATGTGATtat
tattggacctaccccggtggggNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNtttttggcattttctcgagatttcatcattagttttttcagatt
ttttgcacaaagatgcgtattagcaatgcctaaaacatggcagagtccga
tttttgagagaaattcttttccggccgaaaatgccggaattatgccggaa
atcgccgttttgcagattttcatcggactttttccttNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgaaatatgccggaaatc
gccgtttttgcagattttcatcggactttttccttatatttcgttgtttt
ttcacacaaaaacattattaatagcaatgaccacgatcaagcatggttca
attgtcgataaaactgatttttgaagccggaactttctaaaaatcgccag
aacagccgattttctccggaaaaacggtatttcttgaatttctcgagctg
tactttatatctttttatgaaattttgcacactaatgtaaaatgacaata
cctaaaaagttacggagcccgattttcgaaaaacatttttttccggccga
aagtgccggaaatatgccggaaaaactggttttctggcattttctcgaga
ttttatcattagttttttctgattttttgctctaagatgcgtattaatat
tgcccaaaacatggctgagttcgatttttgagaaatttttttttccggtg
gaaaatgccggaaatatgccggaaaaactggttttctggcattttctcga
gattttatcattagttttttctgattttttgctctaagatgcgtattaat
attgcccaaaacatggctgagttcgctttttgagaaatttttttttccgg
tggaaaatgccggaaatcgccgtttttgcagattttcattagattttttc
cttgtatttctatgtttttgacacaaaaacattattgataacaatgccac
catcaagcatgattcaattgtcaataaaactgattttcNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNaacg
ctatgttttctgactgattttttttcatttttctccttgcattgctatct
aactttcatcatcaggtaggtccattcagcatctagcttgtttttaaTCT
TTACTGATTTGCgaattcttcttcttttttagcAATATATAAAGCCACTG
AAAGCTCACATGTCTTCTCAAGACAAAGAAACTATTTTTATCAACACAGA
GGTAAGTAGGAATAGAAATGAGCTTTATTAAGATAATTCATGAAATTACT
TTCTACAGTATCTATTCTATCTAATGATTGACTAGtttttaggtattttt
tgcAAGTTTCTTTGCTACGTTTCGAATAccttctttgttttcaattttag
cCCCTTTATTTATTTCACATGACGTTTAAAAGAGAATTATCAACTAGGAG
AACAAGTACCAATGTCAAACTAAATCTCAATGCATTTGATAAATATGTAA
GTTCTATTAAAGCCAATATGCAGTTGAAACTCTTCAACCTGAACCTCTAT
AACATGAATGTCTCTTTAAATTGAACAAGTTTTGTGGTCTCTTAAATTAA
CAATACCtttttataaaccttactccataactggAGAATGTGCTCCCTAT
GGAGACTCTGTATTATTTTCAACACTAGCGACTTTGTACACAGAATGAAA
TCTTTATATGTTTTCAATGTAATGAAATGATTGTTCTTCCATCTTTGTAC
ATCACCATTTTAGAATATTTTGGCGCAACAACTTTTTAAATTATATATAA
TGAACTTTAATTTAATTTCTAACTTgctatttttcctgtttttagaAAGA
TAAATTTCTAATATATGCAACATATTGCACAGGATTAGAAGAAGCACAAC
AACATGTAAGTTTAGCTTGGCTTTCCAAAagtaaacattttttcaaatac
aTTTCTTTAATGTGAGAAAAGGATCATCTAGATAATTATACTCAAGAAAT
AAGCGATGGATTTTTCTGCAGAGTCGCCCAACATCCATCTTTTAATCTAT
TCATGCAAGTTTTCCTATCATTTTTTAGACCATAGAATTATCAAAAGAAT
CTGGGTTCAGGGACAAAGTTGAGGtaagatttgaatttttaaactaAAGG
TATATAATTTCCTACCAATTTCAATGATTGTATTAGATTTTTCCAACATT
TCTGGATCTAGTTTTGAGAAATTCTCTATTGATTTTTTCTTCCTGCCTTT
ATTGTTTCTTCTACAGAGAAAGTTTCCACCGTCCCTCTTTTTTGTTCTGA
CATAATATCAATGATAAAAGCTCTTCTGCCGTAGACAGAAGTCTATGCAA
AGTAGATAAAAAATTCTacataattcaccaaaatttctaaAAGATGTGCT
AAAAATCGATATCCAAAATAAACCTTACTTTGACCACTGAAGCAGACTGa
agattattgttatttttcagcAATGCAACAAAACAGCAAAACGAAAGTTT
CCTTTACAAGAACAGTTAATGATTCCGTTCCAAAGAATATTGAAATATCC
TTTATTACTGAGGGTAGGTATTTTCTTCAGCTATCTATTGTTTTTCAAAT
CAATATGATACAGTTGACTGTTTAGTCTCAAGTAACGTTTAATAATTTTG
CTTGCTCTTTCATATTGTGAGATTTATTTGCCATTCTTCAGTCAAATAAT
CAAACCTTGGTTAGTATAGATGACTTCTTTCATTTCAGGATCTGAACAAA
CACACACCTGAGACTCATGAAGATAAAAAGGCTGTTGAACAGGCTTATGA
CCTTATGGATGTAGGTTTTATTCATTCTACTTGTCACTACtctgaacaat
aaaaataatctTGAATATAATTTATTATTGCAGGGTCATAGCTTCTGTTT
ACTTATAGTTTGTGTTGGCACGTCATATTCTTTGAATTTCATGAATTCCC
TTACAGGATGTGGCCAGATACATTAATGAATACAAAAGAGATGCAGAAGC
AGTTAAAGTGCTGGCGCAAATCGAAGGAAGGTTTGTTGATACCTTGTTTT
ATAGTACCTAGTCTCTGAGTATGGTTTTTATCTCATCAGAAAGCTTTTTA
TATAGAAACATCCACACGTTTCTTTCTCGCTAATCGTGCATTGGATTATG
TACCTTTTCTTTTCAGAATAAAGGCTATCATTATTGATTACCGTTATTCC
TTGAtgtaatgaatttttttctctttctagtATAAAATATGAAATGCAAG
CTCAGGGGGTAAGTCTTCATCTTATTTAAATTCAATTGCCTTAAGGTTGA
ACTAGCTAGCTTTTGAGGACTAGAAATTGTCTAAGTGCCGAAACTAGACT
TTCCCTTAAATTGCAAAAGATTACTGTATTTAAATACTTCAGGAATTGTT
TTCTCAAATTGGAGTACTATGAATCATCTTTCATAGAAAAGGGGATACCA
CCATATGAACAGtgtattttattattatatttgAACACAACACAATTTAA
TTCATTtaatcattcattcattcgttcattcattccattcattcattcat
tcattcattttcaGAGTAAAGGCGGGCAATATGGACGCTACGTTAAATGT
GGAGAAATTCAAGTCAAATTTGACTCCCAAGAAAAGAAAGTAATAAAGTA
AGAGTCTTATCAAGTTAGTCTCACTTTCAAAGTTATcattggtttgtttt
gaaacATTGCCAGTAATGTTATGCATTTGCCAAAGATTCTCATTGATTTA
TGTCataatttgaagccatttttcaaagtttaaaattttaaaaacagtcA
AGCAATATATTTTCGGATAGAACACTTGTATTTTTATAAGCTTGAGAATG
GTGATACCATCTCATTGATTTAACATCACTATTTACTCTTTTCTTTTGTA
GACGGTTTGCCTTCTTGTTTCAAAAGTCTATTTTACTGTGCAAACAGAGA
GGGGACTATTATGACGTCAAAGAAATATTTGATATGCAGAAATTTAAAAT
TGCTGACGTACCTCCAGTTGGAAAGGGCAAGGTATGTGGTTTGTTTGGCT
CTTATTGTCAAGGCGAGTAGGTAAAGTTTACGAGACAAAGAAAGTCACAT
CGGAACAAGGATGACTGGATCTCTAGGCTGGCAATGGTGTATCAACTTGA
GCTTAGCATAATGATTTATAATTGTGTATTTGTTGGAgaatcgagacaaa
aataccattagatttGCTAGAAATTTTCCAACATGGTTTATTATAATGAG
TATACCTTCTTATCTGTCACAATCTCTTTACTTACAGTTCAGTCAAGGTT
GGTCCATGCAGGCACATGCTCCCGATGGTGGTATGTTTATTTAAGTACCT
TTTGTTATTATCGGAAAGAAACCGGGGTTTATTTTGGTTCGGGAGTCTTC
ATATCGAAAGCATAAAgccatttttcaaatctttccaTGATACTTATGAC
ACTCTTTCAactcaataaaaaaaaagttcctTTGAATTGTACTGACTTCT
TATTTCTTGTTTTAACTTTCAGTAACAGAACATAAAAATTGCACCATGTT
TGCGAAAACACAGCAGGAGAAAATCAATTGGGTTTCCGAAATTTCTAAAT
GCATGTAAGTATGTCATAATGTGTCGCAGTTTCAAAACCCATAGTAACTT
ATATTTACTTTCGTGTGCCTAATAAACTGCATACTGAATGGTATTTCTCA
ATTCTAAGAAAGATTTTGTCATTGTATCTTAAGATCATTGATTTAAGGCC
CGAAGGGCtcgagtagaatctctaaccttcctcaggcaagaaaaagtgaa
gcccacttatttcccatctagaaCCTAGAAttcgccgcaatcatgacgac
gaatTGTATCTAGCGCTTCTATTGTTTTTGtggactgcatttttttaaat
ctagcgatagattttactttcaatccgtcGTTTGTGTAAAAGCCACGCGC
AGGCGTTCTGTATAGGAAAAGTGTCTTCATTTCCCAttcaggagtctcga
gtctagcccttcgggctttaaactcaatacTTAGGATAATAATGGGCGAT
GTTTTCCTAATTTGTAACttatttttttactcttttacAGAGAGGCGGTA
ACTTTATCACAATACGAAGGGAAGTTGGACAAGCATCAATTTGAACTTAC
AACCTTCGAAAAACCACAATGTTGTACTGTTTGTAACAAATTACTAAGGT
AAGCTTTTAATATCACCCATCGTTCGATAGTTTTTCGAATCTTAGCCTAC
AAAAAATGATATGCTGATATTAAAGAACGAATAGTGGTTTTATATTTGTA
ACCCAAGATTCGCTCAAAACACTTATTTTACTTTTCAGGGGTCAAGTCAG
TCAAGGCTATAAGTGTAGCAACATTGGTAAGACCGTATTTAATAAAAGAG
CTACACTCTAATCATATGTTTTAGAATTTGAGTGATTTAGGCTACCAAGA
AAAAAAGTACAATTCATTCGATAAAAATTATGAAACTCAAAACTCTAGAA
TAAGCTTTAGTTTACCATTTCCATTTAACTATTCAAGGCTGACAACACCC
AAATTTTCATATGTTTTCTGTACAAAAGATAACGCAATCATCAACGAAta
ttttgaaagccatttttcaattttagaatgTGGAGCTATCGTACACAAAG
ACTGTTTGGTAAAATGTCCGAGATGTAAGATCGCACCAAGTCGTCCTCTA
AACCCTAAACCTACCAGTAAGTTCTAAGATCATTTTTTTGCAGGAGAAAG
TTCGAAACAGGGAAATTCACATTTtgaaacaaagaaagattttttagctA
GAGTTCCCTTTCCCCTAATTACAATGATATGCATCTGAATCAAGTTTTCA
TTACTATTTTGTAATGATACTAATCCCTGGAATCAAATACTTTCGTTCAG
TTTGAAATGGATTTCTTTTTGAATATCTGTTTTGTtagaaattctaaaaa
taaatttccttaCCGCTCAGGATTTACAGAAAACACAGTTTCTCGAAAGT
TTCTCAATATTACTTaacgtattacttcgaataaacgcccggggcgttta
tttcattttttcgattttaggaagggcgtttattcgagggaggcctttaa
aagaagggggcgtttgtTAAATTATTTGAGTCTAAcgtcgaatatttaga
gcaaatctACTCTTTGTTTTAGTTCGATACCAGGATTTCAGTGCAAATTT
CTTTGGGTCAGCGACTAAAGTTGCATTAAAACTGATCTGGTTACAAAAAa
gactaaaatcttccttttcaatcCTAATCAAAACTTGTATCAAAGTACAA
GCCCCctagagggggcgtttatttgagggggcgtttgttaaataattttc
cttttgttGAGGGGGGcttttaaaagaagggggtcgtttatttgaagtaa
tacggtagTTCTCTACTACGTACCCGGagaattatttgtttttgttattg
atGAATAGGTGGGCGAAGCATGAAATCTTATGAGTGGAGTACAACAAGGT
GAGAAGCTCAAAGAAAGGGCTTTTGATTGTAAATTCAAGCAAACTGTTTT
CGACGAAACTAAAAATTCTTGttcattaaaaatcaatttagaCTGACTGG
TCTTCGTAGTGTTTACGTTTGCTTGAATTTACAGTCACCATTATTTATTG
TCTTATATGTGTAtactaattttatttttattttcatttactttCATATT
TCACTCAAATAATTGCACTCCCTTCCTTCACTCGTTCCTTCACTCGTTCC
TTCACTTACCTATTCACAACTTCGACACGACAGTACACTTGAGACCACGT
GATGCACGGCCTAGAATGTAAGTCACATTATGCACTAAACTAACTTGATC
CTTGATACCAAAGAGGTAATCTGCAATTCCTGAAATAACATGCCGTCACA
ACTGATTTAGGGACTGGTCATTTGGAGGGTAGACTTGAGTCTTATTAAAC
TAACACAAAGTGTAAAACACgtgaaatcaaaaatgagctTTGATCCCACC
TTAATCACATGAGCAACGTATTTTGTTCAAGTTTTAGTGAAGGAAGAAGA
TAACCTGCTAGGACGAATTACTTACATTACCGTATTGTAACTCGTAACAA
TTGACAATATAATGACAACTTTAAATTTGACACTAAGATAATTCACCGAG
ACTTGCACTTCGGGAATGGTCATGAAATATCTATGGGAGAATGGGATGGA
TAAACCTCTCTCCCCTAAGGATAccataaacaaaaacaatttcatacTCA
CTCTCCTACCACAGTGGGCAGAAATCAGCGGTCAGACACACATTTGGCCA
TAAGGTTCGATCTAGATGACTTGGAAAGGTTATTCTggtcaggggggggg
tcagtactaaaatgtaagacatacatgagtactaaaaggattttcgctaa
tttttgacatacccccacctatttttcgaaaatgttattttagtacacat
gtacttaaattattttgagcaatttaacatagataccacccattttttgc
ccttttacgggTTTACATTTACCAAAttggggtcattgttacaaacctag
tgGAATTTAGCGCATCAATCTGCATAATAATATANAGGATTTtagctaat
ttttgacatacccccacctatttttcgaaaatgttattttagtacacatg
tactaaaattattttattactaaactgtgctaaactgtacataaaaatat
tttttttaaatatttaaaaaattggaaaaattctgaaagattttttcgaa
aattcctgaaaaaaaaaatcaatttttttccaaaatgttaaaaaaatgct
ccattttggctgattttagaacaaaatactaagatttttcaaatatttct
ttaagggaccacccttttggtattttagtacacatggtactaaaactatt
tttgagcttttttgcagtaccaccacgtcactaaatgtcatgatgtctga
gattttagtaccaaccccctcccccctgttCTGGTTATTCccctgaaaat
tttttcctcagatttttccACTTTTTGACTAGAAAAGGCTGTAGAATTCA
TTTAAACCAACTTGGAAGTCTTAAAATTGATGGTTACTAAGGGAGAAACa
ctaaattttgagaaaatggcCAACCTTTgtcaaaaatggcattttgggcc
gaaaagcaaccaaaaattgcattttttaccACTCAAAATCCTTAGATATT
AAAAATACATAGGTTCTGACAGATGGATTTTGTTCAGCTGTGGCttccaa
attttaaaaaatatcacGGTTagcttaaaaaaaattgtgcaaATCAACTC
TTTTGTTTATAGGGTCACTATCATTCTTGATGGCTCCATTATTGAATACT
CCAAagtcattttttggaaaatgccATAAGCAGATCAATGCTTTACTGGG
CTATTTAGAAGTAGTTTTTAAtgtagtttttgaaaaaaaacattatggTT
TCATATGTTCTGCTTCTGGCATTTAGagaaaaaagccttaaaaatgggat
ttttccataaatttgataaattcCATTTTAAGGTCAATTTGTAACGATTT
AAGGGTCTGGACTTTTTTTGGGTACTCCATTGACTTCAAATTTGccttaa
atttgacaaaaacccaaaaaatcattggaaagaaaagttttgatatAAAA
AACATCACACNATTTGccttaaatttgacaaaaacccaaaaaatcattgg
aaagaaaagtttttatataaaaaacatcaCACAATTTAGGAACACTCTCC
TCTAAAATCCTCCAAACcttctagtagatactttatgacctCTCCAAGCT
TACCttgaaaaaactaattttgTTGGGGACCAATTTTGGccactcgccaa
aataaaaaatttcgttTCGTTTCAAAAGCActcatttttaggcaaaaaag
atCAACTTATCGtgtcgttcgccaaaattagttctcagaaaaattaaaaa
aattgctgCTTCGCAAGTGATAAACTACAGCCCGGCtggtaaaaaaacat
ttataacGTCTAGATAAAGCTCGATAAATCGAacatgattttaaaagttt
gcCAGTAGCAGTTGTCTGATATGATGGATTCTGAAACAACGTGTTGTGCA
AGCTGGAAGTCTTTTACTAGAAGTTAGGCTTTGATCGTTCTCTCATAGCA
TTCCAAACGCTCACAAGTCACCACCAGCCCAACAAGTTTCACAAATGCAG
ATCAGCGACTCCTTCTCTAAATACCACTGGTaagataattgtttttattt
gtgCAGAAGTAAGTGCTGTTATTTTTTACaaggacaatttttt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041754	XLOC_041754	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_46	supercontig	scaffold_46:335672..352464 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
16.1432	16.8655	5.49225	2.66055	19.0302	12.44	20.3349	25.0666	17.2584	23.5447	15.2149	15.9364	12.7782	11.4407	13.1811	17.577	13.8436	14.5607	3.95744	9.28974	10.756	9.08749	11.8132	13.9077	15.7652	14.9149	15.6075	13.5152	21.9219	17.5261

Blast

[Close]

BLAST of TCONS_00066768 vs. Swiss-Prot (Human)
Match: VAV3 (Guanine nucleotide exchange factor VAV3 OS=Homo sapiens GN=VAV3 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 7.684e-84
Identity = 206/639 (32.24%), Postives = 337/639 (52.74%), Query Frame = 1

Query:  265 WQMAINWVRSTDIEPAKKQALNKIDDLLEFAQSLRDGYILCLVANSLRPGTIKDISKIN-NVNMHEFLCNRNIRAFLKACTTVXXXXXXXXXXAKELYEATNFEAVIKTLSHLSKTSIAKGAGLKPFPPDDYKKQNHQEQEEDIYGSLGEILEEREEKTDYYNYDEQEEDIYDHV---EVSEKIYDDIVQCTRQAHAATKPAASDKRSHIVNEIIETEDTYVNHLKVMVEQYIKPLKAHMSSQDKETIFINTEPLYLFHMTFKRELSTRRTSTNVKLNLNAFDKYKDKFLIYATYCTGLEEAQQHTIELSK-ESGFRDKVEQCNKTAKR-KFPLQEQLMIPFQRILKYPLLLRDLNKHTPETHEDKKAVEQAYDLMDDVARYINEYKRDAEAVKVLAQIEGSIKYEMQAQGSKGGQYGRYVKCGEIQV-KFDSQEKKVIKRFAFLFQKSILLCKQRGDYYDVKEIFDMQKFKIADVPPVGK--GKFSQGWSM-QAHAPDGVTEHKNCTMFAKTQQEKINWVSEISKCIEAVTLSQYEGKLDKHQFELTTFEKPQCCTVCNKLLRGQVSQGYKCSNIECGAIVHKDCLVKCPRCKIAPSR-----PLNPKPTIHLR--PRDARP-----RIIPNAHKSPP 2115
            W+    W+    + P   +       + + AQ+LRDG +LC + N+LR  +I ++ +IN    M +FLC +NIR FL AC   F +   +LF+A +L++  +F  VI+TLS LS+T IA   G++PFP ++         +EDIY  L ++++E           E EED+YD V   +   ++Y+D+++   +AH    P  +D RS  + EI +TE+ Y   L+ + + ++ PLK  +++ + +++FIN   L   H    +E+     + N +     F  YK++ +IY  YC+G+E A      +SK +   + K+E+C+K A   KF L++ L++P QR+LKY LLL++L KHT +  E K  ++ A D M D+A+Y+NE KRD E ++ + Q + SI+   Q        +GR    GEI++   D   K+  +R  FLF  ++++CK++GD Y++KEI D+Q++KIA+ P   K   K+S G+ +      +G+        + KT+  K  W+ +    +  +     +     H F++ TF +   C VC  LLRG   QGY C   +CGA  HK+CL +   C    S       L  K T  LR  P+   P     ++I N   +PP
Sbjct:    4 WKQCAQWLIHCKVLPTNHRVTWDSAQVFDLAQTLRDGVLLCQLLNNLRAHSI-NLKEINLRPQMSQFLCLKNIRTFLTACCETFGMRKSELFEAFDLFDVRDFGKVIETLSRLSRTPIALATGIRPFPTEE------SINDEDIYKGLPDLIDE--------TLVEDEEDLYDCVYGEDEGGEVYEDLMK-AEEAHQPKCPE-NDIRSCCLAEIKQTEEKYTETLESIEKYFMAPLKRFLTAAEFDSVFINIPELVKLHRNLMQEIHDSIVNKNDQNLYQVFINYKERLVIYGQYCSGVESAISSLDYISKTKEDVKLKLEECSKRANNGKFTLRDLLVVPMQRVLKYHLLLQELVKHTTDPTE-KANLKLALDAMKDLAQYVNEVKRDNETLREIKQFQLSIENLNQPV----LLFGRPQGDGEIRITTLDKHTKQ--ERHIFLFDLAVIVCKRKGDNYEMKEIIDLQQYKIANNPTTDKENKKWSYGFYLIHTQGQNGL------EFYCKTKDLKKKWLEQFEMALSNIRPDYADSNF--HDFKMHTFTRVTSCKVCQMLLRGTFYQGYLC--FKCGARAHKECLGRVDNCGRVNSGEQGTLKLPEKRTNGLRRTPKQVDPGLPKMQVIRNYSGTPP 608

The following BLAST results are available for this feature:

BLAST of TCONS_00066768 vs. Swiss-Prot (Human)

BLAST of TCONS_00066768 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
VAV3	7.684e-84	32.24	Guanine nucleotide exchange factor VAV3 OS=Homo sa...	[more]

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TCONS_00066768 (transcript) - C. hemisphaerica