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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066766 ID=TCONS_00066766|Name=TCONS_00066766|organism=Clytia hemisphaerica|type=transcript|length=3656bp
gtgccatccgcgaaaattaatccccgcgaaatcttaaaatttcgcggatg
agctcaaccgcgaaatttaatccccgcgaaaatttatcccattaaagtag
gtgcaccttgtccggaccaaaatttatcaggtgcgTTCTTTCAGTGCGGA
ACTTGGTATTTCCGAATTTTTCCTTGAGTGCAGCCTTGCCATATTTTGCA
AACTGGAAATTCTAACACCGAAAAGAGTGCCAATAAAAACGAATTTCTTA
CCATCCATATTCTTCTTTAGCTCCTCTTCAGCCAAATCCATGAATCCAAC
AAAGAAATCGCCCTGGTCCAACAAAAAGTAGTGtttaatcgaacgcaatc
gataCATCAATTTCTTCTCCGTCAATAATTGATCTAACAACGTGTGACTG
GCGTAATCGTACGCTTTCTCAATGTGCTCTACGTAATCACGTTCGTTCAG
ACAATACACAATCTCTTGCGCATGCGGGCATTCTAGTGTCATCCCACACT
GGCGAATGACGTTCAAGTATTTACCCGCGCGAAGAATCTTCTCGGCAACG
CGTTCAAGGAACATTGGAATGCGCGCGCGTTCGATTGTGTAATGTTGTTC
CCAATATTGATCATTGTAGTCTTCCGTCACGCGTTCTTTGGCGAACGACT
CGTGCTCTGCAACCAGGAATTCATTGTAAGGATCTTTGATGATACCTTCA
TAGATCCATTTTTGTAGGATATCAAAATACGGCGTACAAGCGGCTTGAGT
CAGGTACAAACACAGATCTTTGCCTTTCGGGTCACCCGTGTAAGCTTCTG
TCTTCTCGTGTAACAAAGTCAAAATGGCTGCTCCTTTACAATCCCCCCTC
TCAATCATGATAGCAACTGTTGCCAAGATATCGATTGTTTTCATAGAGGG
TTGAATGTAAAACCAAATCTTCTGTAATGTAAGTAGACCCTTACGAAATT
GTTGCTCAAGCTGTGCTACGAAAATATAATAGTCCTTTAGTAAGGATCTC
ATAGCTGAACATAAGGCGTGGCTGACCAATCCCTTACCAAAATGAGATCC
AGACTCAATAAAGCGACAAACAAGGGAATAATTGGAACACATCGGCAACA
TTCGGTGGACAATTTCACAAAGTGATGCATCGGTACTGTTATCTATAGTG
AAagattttttggatttcttttcgACATCTTTGACTTCATCTTTAAGAGT
TATATATTTCCCTTCGACACCCATGAACAAGAATAGAAGATCCTCGATCA
ACAGTACTTCCTGCATTTTTAACGGTAAAGTTCCAATGGAAACAGAGTCT
AAATCGTAAGCCTGTCGATACACGTCAACAAAATCGTTGGTCAAGAAAGG
TCGATCATCCACCCAACTTGGGAGGACAGGTAGACCAGTACCCATTTTCT
TGGCGTGTTTTTCACGAAGGACTTTCACAATCTCCGTAGATGAGGTTGTC
GAAGTGTTCGCAGTGATATTGGCCAGTTTCGTTTTCAAATCTTGAACATC
TTTCTGAGTCATCAGTGTTGATTTAGGGATGGCTTTAGTGAGTGCATCAA
TTTCCTTCCCTAATTCGGTTGTCGGGGCAACGGCCGCCATATTTGAAGCG
GAACTACCGGacaattcttttgattttcgACGTTCTTTATCATTTCGATC
GataaatttgaccaaataaCGCTCTTGAACAATCGTGGACAATAAATAAG
TCAACGAATCTAGTTCCCGTACATTTTTCGATTTCAGTTCTTCATATTTT
TTAAGAAAGTCCTCAGGCGAGGGACTGTTCTCTGCAATCTTCCGCTTCGC
AGTATGCGTGGAGATTTGAGTGGTAACATAGGGTGTTAAGTCTTTGGTCA
ATAATTCAGCATAGACTTCAGGACCATCTCCCTCTGTCACGttgaataat
ttcaataattctGCTGCATGATGATGGATTTTAAATTCACTCATTTTTCT
TAGATCTAAAGTAAAAACGGTAATATGAGAAATTGAATCTTCACCATACG
ATACTGTGATTATAGAAAACATAGCCGAATACATTGATTTATATTCTGAC
CAAAGAAAGGGCAATGAGACAATACCATTCGTATTGGTACTAAGTAATTG
CACAAGGTCAGAGAAGGTTAGGATTGGTAGTTAGTTTGCtaaatcaaaaa
aactttaaaaaacttcaAGAGGGGGAATGAAATATGATAAAATCCCAACG
ATCGAcacaaaattatccaaaaaaaactaaactgaTAGAAAAATTATCTT
ACAAATTAGAACTGCTGTTataaattagccaaaaaaatTCCATTATAATA
CATAAAATACTAATATTCCAGCTGATTCCCAATAACAAATAACTGGATTA
ACTCCAATTATTTGCCGTCAAAATCTCAATTTTGCTGTAATGTGGTATAA
CTTGACCGAAAATGACCTCCAGAAAAATACCCTTCCTTTAAACTTCATAC
ccaaattctttcaaaagctcaaaatcaaaactataaaagaaTCTTATATT
TCTCAACTCTTGGAACTCGATTGATGACCAAACGTCCATCATATGAAAGA
GAAGCAAAGATCCATGGATCAACACTTGACCATTCCACAGCATACACCGA
GTCTTCGTGTTCCTCGAAAGTCGATATCAATCTATCAGGAATTGGTTCTC
TTGGTTTTTCTTCCTCCTCATCTTCGTCGTCAAGGTGACCGAAAGGCTCC
GAAGATAAGGATGCAATATTGGATAAAATGACACGACTGTCACTACTCGA
CGTCAAAATCAATTGATCATGAAAATTATTATATCTGATACTCCATACCC
AATGTGAGTGATCTGAACGCGTCATTAGGCATTCTTTCGTGTTCCGAATA
TCCCAAAATTTGACTTTACAATCATCCGAACAACTAGCTAGATAGTATTG
TTTGTTCGGATTCATATCTAAGTCACGAACTAATTGTGAATGAGCATTCT
ctatagaaaatgaagatgacaTGCTCCTCAAATCATATCCTTTAATGTGA
CAGTCAATACCGGTGGCAATTTGCGAACCACCATGGTGTGGATTGAATCT
ACCGACACTGTATTGTAATTGTGCTTTTCCTTCTAAGGTTATAGTATCAA
CATGATCAGCACCCGTATTTGAAGTTTGCCATAAATCAATATGTCTTTCA
GAGATGGTTAATAGCTTGTCGTTATCACTGGATGGGTTCCACATGACTTT
CTTGACATCACCATGCCCTGCATCCAACTCACATACATGCTGTAACGAAA
CGCATTTACCGTTATTATCACCAGGTGTTAACTCATAAACAGGAGGTGCT
GTCTCATCTAAGGGTGGAATCCTCCACATTGCTGCAAAACGTTTCGTTTT
ACCATCTATAATCTTACTATAACACGTGGCTAATATATTCTTATCTGAAG
GATTCGATGCTATATTCCATATTTCACCAGGCGTGTGCGAAAAAACATGC
TTTGTGACTAGGTTACTTTCGTCttcaaaatcaatcaaatgGACTTGGTT
ATCATTACGTAATGATTGGGTACCAACTAAAAACCGTATTGCTTCGGTTT
CGCCAAATTGAGGGCATAACGAACGAGCTTGAAATTCAAGACCATATATC
ACTGGTGCTGGGTCATTCattctattttctttttgtttctgaaaagaaag
aaaaat Run BLAST on NCBI transcript from alignment at scaffold_46:257849..261811+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066766 ID=TCONS_00066766|Name=TCONS_00066766|organism=Clytia hemisphaerica|type=transcript|length=3963bp|location=Sequence derived from alignment at scaffold_46:257849..261811+ (Clytia hemisphaerica)
gtgccatccgcgaaaattaatccccgcgaaatcttaaaatttcgcggatg
agctcaaccgcgaaatttaatccccgcgaaaatttatcccattaaagtag
gtgcaccttgtccggaccaaaatttatcaggtgcgTTCTTTCAGTGCGGA
ACTTGGTATTTCCGAATTTTTCCTTGAGTGCAGCCTTGCCATATTTTGCA
AACTGGAAATTCTAACACCGAAAAGAGTGCCAATAAAAACGAATTTCTTA
CCATCCATATTCTTCTTTAGCTCCTCTTCAGCCAAATCCATGAATCCAAC
AAAGAAATCGCCCTGGTCCAACAAAAAGTAGTGtttaatcgaacgcaatc
gataCATCAATTTCTTCTCCGTCAATAATTGATCTAACAACGTGTGACTG
GCGTAATCGTACGCTTTCTCAATGTGCTCTACGTAATCACGTTCGTTCAG
ACAATACACAATCTCTTGCGCATGCGGGCATTCTAGTGTCATCCCACACT
GGCGAATGACGTTCAAGTATTTACCCGCGCGAAGAATCTTCTCGGCAACG
CGTTCAAGGAACATTGGAATGCGCGCGCGTTCGATTGTGTAATGTTGTTC
CCAATATTGATCATTGTAGTCTTCCGTCACGCGTTCTTTGGCGAACGACT
CGTGCTCTGCAACCAGGAATTCATTGTAAGGATCTTTGATGATACCTaaa
gtgagaaaaaaagaattttttaaattagaaATTTACGCTTTATTgcaaag
aagatgaaaaatggcaagaggagaattttgaagaaaaagaaattcgatTT
AACAGCTAGCTCGAAGGCTAAATCTTTCCCTGCCAAGAAGAAGATCTCAC
CAAATACTTTAATCTATAtattttttaacatattttcCGATACAGCTCTA
ATTAtagaataatttgaataatgcAATTTTGAATTATGGAAATTCCACAA
CAGTCGATTTCAAAAGAACCAAAAGAATAAGTCGAGAAGAATTTAAACAT
ACCTTCATAGATCCATTTTTGTAGGATATCAAAATACGGCGTACAAGCGG
CTTGAGTCAGGTACAAACACAGATCTTTGCCTTTCGGGTCACCCGTGTAA
GCTTCTGTCTTCTCGTGTAACAAAGTCAAAATGGCTGCTCCTTTACAATC
CCCCCTCTCAATCATGATAGCAACTGTTGCCAAGATATCGATTGTTTTCA
TAGAGGGTTGAATGTAAAACCAAATCTTCTGTAATGTAAGTAGACCCTTA
CGAAATTGTTGCTCAAGCTGTGCTACGAAAATATAATAGTCCTTTAGTAA
GGATCTCATAGCTGAACATAAGGCGTGGCTGACCAATCCCTTACCAAAAT
GAGATCCAGACTCAATAAAGCGACAAACAAGGGAATAATTGGAACACATC
GGCAACATTCGGTGGACAATTTCACAAAGTGATGCATCGGTACTGTTATC
TATAGTGAAagattttttggatttcttttcgACATCTTTGACTTCATCTT
TAAGAGTTATATATTTCCCTTCGACACCCATGAACAAGAATAGAAGATCC
TCGATCAACAGTACTTCCTGCATTTTTAACGGTAAAGTTCCAATGGAAAC
AGAGTCTAAATCGTAAGCCTGTCGATACACGTCAACAAAATCGTTGGTCA
AGAAAGGTCGATCATCCACCCAACTTGGGAGGACAGGTAGACCAGTACCC
ATTTTCTTGGCGTGTTTTTCACGAAGGACTTTCACAATCTCCGTAGATGA
GGTTGTCGAAGTGTTCGCAGTGATATTGGCCAGTTTCGTTTTCAAATCTT
GAACATCTTTCTGAGTCATCAGTGTTGATTTAGGGATGGCTTTAGTGAGT
GCATCAATTTCCTTCCCTAATTCGGTTGTCGGGGCAACGGCCGCCATATT
TGAAGCGGAACTACCGGacaattcttttgattttcgACGTTCTTTATCAT
TTCGATCGataaatttgaccaaataaCGCTCTTGAACAATCGTGGACAAT
AAATAAGTCAACGAATCTAGTTCCCGTACATTTTTCGATTTCAGTTCTTC
ATATTTTTTAAGAAAGTCCTCAGGCGAGGGACTGTTCTCTGCAATCTTCC
GCTTCGCAGTATGCGTGGAGATTTGAGTGGTAACATAGGGTGTTAAGTCT
TTGGTCAATAATTCAGCATAGACTTCAGGACCATCTCCCTCTGTCACGtt
gaataatttcaataattctGCTGCATGATGATGGATTTTAAATTCACTCA
TTTTTCTTAGATCTAAAGTAAAAACGGTAATATGAGAAATTGAATCTTCA
CCATACGATACTGTGATTATAGAAAACATAGCCGAATACATTGATTTATA
TTCTGACCAAAGAAAGGGCAATGAGACAATACCATTCGTATTGGTACTAA
GTAATTGCACAAGGTCAGAGAAGGTTAGGATTGGTAGTTAGTTTGCtaaa
tcaaaaaaactttaaaaaacttcaAGAGGGGGAATGAAATATGATAAAAT
CCCAACGATCGAcacaaaattatccaaaaaaaactaaactgaTAGAAAAA
TTATCTTACAAATTAGAACTGCTGTTataaattagccaaaaaaatTCCAT
TATAATACATAAAATACTAATATTCCAGCTGATTCCCAATAACAAATAAC
TGGATTAACTCCAATTATTTGCCGTCAAAATCTCAATTTTGCTGTAATGT
GGTATAACTTGACCGAAAATGACCTCCAGAAAAATACCCTTCCTTTAAAC
TTCATACccaaattctttcaaaagctcaaaatcaaaactataaaagaaTC
TTATATTTCTCAACTCTTGGAACTCGATTGATGACCAAACGTCCATCATA
TGAAAGAGAAGCAAAGATCCATGGATCAACACTTGACCATTCCACAGCAT
ACACCGAGTCTTCGTGTTCCTCGAAAGTCGATATCAATCTATCAGGAATT
GGTTCTCTTGGTTTTTCTTCCTCCTCATCTTCGTCGTCAAGGTGACCGAA
AGGCTCCGAAGATAAGGATGCAATATTGGATAAAATGACACGACTGTCAC
TACTCGACGTCAAAATCAATTGATCATGAAAATTATTATATCTGATACTC
CATACCCAATGTGAGTGATCTGAACGCGTCATTAGGCATTCTTTCGTGTT
CCGAATATCCCAAAATTTGACTTTACAATCATCCGAACAACTAGCTAGAT
AGTATTGTTTGTTCGGATTCATATCTAAGTCACGAACTAATTGTGAATGA
GCATTCTctatagaaaatgaagatgacaTGCTCCTCAAATCATATCCTTT
AATGTGACAGTCAATACCGGTGGCAATTTGCGAACCACCATGGTGTGGAT
TGAATCTACCGACACTGTATTGTAATTGTGCTTTTCCTTCTAAGGTTATA
GTATCAACATGATCAGCACCCGTATTTGAAGTTTGCCATAAATCAATATG
TCTTTCAGAGATGGTTAATAGCTTGTCGTTATCACTGGATGGGTTCCACA
TGACTTTCTTGACATCACCATGCCCTGCATCCAACTCACATACATGCTGT
AACGAAACGCATTTACCGTTATTATCACCAGGTGTTAACTCATAAACAGG
AGGTGCTGTCTCATCTAAGGGTGGAATCCTCCACATTGCTGCAAAACGTT
TCGTTTTACCATCTATAATCTTACTATAACACGTGGCTAATATATTCTTA
TCTGAAGGATTCGATGCTATATTCCATATTTCACCAGGCGTGTGCGAAAA
AACATGCTTTGTGACTAGGTTACTTTCGTCttcaaaatcaatcaaatgGA
CTTGGTTATCATTACGTAATGATTGGGTACCAACTAAAAACCGTATTGCT
TCGGTTTCGCCAAATTGAGGGCATAACGAACGAGCTTGAAATTCAAGACC
ATATATCACTGGTGCTGGGTCATTCattctattttctttttgtttctgaa
aagaaagaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066766-exon-scaffold_46-1491911889:257849..258539 | TCONS_00066766-exon-scaffold_46-1491911889:257849..258539 | Clytia hemisphaerica | exon |
| TCONS_00066766-exon-scaffold_46-1510915933:257849..258539 | TCONS_00066766-exon-scaffold_46-1510915933:257849..258539 | Clytia hemisphaerica | exon |
| TCONS_00066766-exon-scaffold_46-1575043694:257849..258539 | TCONS_00066766-exon-scaffold_46-1575043694:257849..258539 | Clytia hemisphaerica | exon |
| TCONS_00066766-exon-scaffold_46-1491911889:258847..261811 | TCONS_00066766-exon-scaffold_46-1491911889:258847..261811 | Clytia hemisphaerica | exon |
| TCONS_00066766-exon-scaffold_46-1510915933:258847..261811 | TCONS_00066766-exon-scaffold_46-1510915933:258847..261811 | Clytia hemisphaerica | exon |
| TCONS_00066766-exon-scaffold_46-1575043694:258847..261811 | TCONS_00066766-exon-scaffold_46-1575043694:258847..261811 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:257849..261811 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR007259 | GCP |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000226 | microtubule cytoskeleton organization |
| GO:0007020 | microtubule nucleation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0043015 | gamma-tubulin binding |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0000922 | spindle pole |
| GO:0005815 | microtubule organizing center |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0000226 |
microtubule cytoskeleton organization |
| biological_process |
GO:0007020 |
microtubule nucleation |
| cellular_component |
GO:0005815 |
microtubule organizing center |
| cellular_component |
GO:0000922 |
spindle pole |
| molecular_function |
GO:0043015 |
gamma-tubulin binding |
Blast
BLAST of TCONS_00066766 vs. Swiss-Prot (Human)
Match: GCP2 (Gamma-tubulin complex component 2 OS=Homo sapiens GN=TUBGCP2 PE=1 SV=2) HSP 1 Score: 562.377 bits (1448), Expect = 0.000e+0 Identity = 280/567 (49.38%), Postives = 405/567 (71.43%), Query Frame = -3
Query: 253 MSEFKIHHHAAELLKLFNVTEGDGPEVYAELLTKDLTPYVTTQISTHTAKRKIAENSPSPEDFLKKYEELKSKNVRELDSLTYLLSTIVQERYLVKFIDRNDKERRK-SKELSGSSASNMAAVAPTTELGKEIDALTKAIPKSTLMTQKDVQDLKTKLANITANXXXXXXTEI-VKVLREKHAKK-MGTGLPVLPSWVDDRPFLTNDFVDVYRQAYDLDSVSIGTLPLKMQEVLLIEDLLFLFMGVEGKYITLXXXXXXXXXXXXXSFTIDNSTDASLCEIVHRMLPMCSNYSLVCRFIESGSHFGKGLVSHALCSAMRSLLKDYYIFVAQLEQQFRKGLLTLQKIWFYIQPSMKTIDILATVAIMIERGDCKGAAILTLLHEKTEAYTGDPKGKDLCLYLTQAACTPYFDILQKWIYEGIIKDPYNEFLVAEHESFAKERVTEDYNDQYWEQHYTIERARIPMFLERVAEKILRAGKYLNVIRQCGMTLECPHAQEIVYCLNERDYVEHIEKAYDYASHTLLDQLLTEKKLMYRLRSIKHYFLLDQGDFFVGFMDLAEEELKKNMD 1944
MSEF+IHH ELL L V GDG EVY +LL K+ TPYVTT +S H+AK KIAE S +PEDFLKKY+ELKSKN R LD L YLLS + +++ ++++ +N KER + + GSS +++ A +++ + +++++L+ +L ++ ++ S E+ K+LR+K KK G LP+ P+WV +RP L DF+ + D ++ IGTLPL QE ++EDLL++ +GV+G+Y++ + + + ++F +D + D S+ E+VHR+LP+ ++YS V RFIE S F G V+HAL +AMR+L+K++ I V+QLEQ R+GLL+LQK+WFYIQP+M+T+DILA++A +++G+C G + L+LLH+++ +YTGD + ++LCLYLT+AA PYF++L+KWIY GII DPY+EF+V EHE KER+ EDYND+YW+Q YTI + +IP FL+++A+KIL GKYLNV+R+CG + CP A+EI+Y L ER YVE IEKA++YAS LLD L+ EK+L+ LRSIK YFL+DQGDFFV FMDLAEEEL+K ++
Sbjct: 1 MSEFRIHHDVNELLSLLRVHGGDGAEVYIDLLQKNRTPYVTTTVSAHSAKVKIAEFSRTPEDFLKKYDELKSKNTRNLDPLVYLLSKLTEDKETLQYLQQNAKERAELAAAAVGSSTTSINVPAAASKI-----------------SMQELEELRKQLGSVATGSTLQQSLELKRKMLRDKQNKKNSGQHLPIFPAWVYERPALIGDFLIGAGISTD-TALPIGTLPLASQESAVVEDLLYVLVGVDGRYVS----AQPLAGRQSRTFLVDPNLDLSIRELVHRILPVAASYSAVTRFIEEKSSFEYGQVNHALAAAMRTLVKEHLILVSQLEQLHRQGLLSLQKLWFYIQPAMRTMDILASLATSVDKGECLGGSTLSLLHDRSFSYTGDSQAQELCLYLTKAASAPYFEVLEKWIYRGIIHDPYSEFMVEEHE-LRKERIQEDYNDKYWDQRYTIVQQQIPSFLQKMADKILSTGKYLNVVRECGHDVTCPVAKEIIYTLKERAYVEQIEKAFNYASKVLLDFLMEEKELVAHLRSIKRYFLMDQGDFFVHFMDLAEEELRKPVE 544
The following BLAST results are available for this feature:
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