TCONS_00066761 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066761
Unique NameTCONS_00066761
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3996

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066761 ID=TCONS_00066761|Name=TCONS_00066761|organism=Clytia hemisphaerica|type=transcript|length=3996bp
GCCCTGTTGATTAGTGCTCATCAATCAAAAAGAAAGATAAAGGGTAAATC
GAGTAAATCACTCGCCTAGACGAGAATCAGTGTATTAATTTGTCTTTTCA
TATTGCTTTACTTTCAGCTATCGCATTGATAGTGTTTGTAGCCATTCAGC
AATGTATTGGTGTAAAGAATCATCAAACTTTCTTCGGGATATACGGAAAG
TTTATCCCAGCCAATAACCAGGGTAGTGTTAAAGGTTCACAAAGAAACAT
TTTACCACGTGTCAATGGCGAAGAGGGAGGGGACGTTAAACTGACCCTCG
GCCCCGCCATAAAGCCCATCAAAACTCGCGATGGACCATTCCAACCAAGT
CAACAAGTCAGTGAGATCATTGGCCAAGTGATGCATTTCGACGAAAATAT
GTTAAACGGGCGTGGTCCATCTGTTGCTCGACATCACCCAGCGCCCTCCG
CCCATCGAGAGGCGGAAGAAGATGAAGAGGAACAAACACCGCCCAATGAT
GAATTGGCGTCTGAACACGGACCAACTTCACAGGAAGAAACAATAGAAAA
CGACGATTACAACAACGTGGAGAAAGAAGAGTACATCGCGAAAGGGCGTG
AAGAAAGCATGCATTTCTCAAAATTGTTAGACCAATTAGAAGATGATCCT
GGACTTGGTAATTCACAGACCGGAAACTTAAAACCGACGCATAAGCTTGA
ACAAGGTCGTCTGTACAATGGCTTCAAAGCAACGCCTAAATTAAAGCATC
CTTTGATTCACCGTAAGAAAGGATGTACGGGGAAGAGATGTGATATAGCA
GGGGGATTTTTTGGCGCAACTGATGGACatttcgaaccaccaaatgaaGA
TGAAGTACCTTATGATGTAGGAGACACTCCAATCATTGGCGATGCAGAAG
GTCCGGTCCAAGATGAAGCTATGATGGCTGATACTTTATTTCACCTTCAC
AAAGTGTATGACAAAGAGAAACAGGCCTTAGAATTGCTGGGCCACCATAA
TGGACATCACTTTCACCACGGATTTGGAGGTCATTACTACCATGAATTTC
CACACCACGATGTCCATGACGCGCATGACGAACATCATCACACTCAAATG
ATCCCCATCGGTATCGAACTACCTAATCACTTGCATTCTCCACAGAACTT
TCGTCACCATGGTGGTGCTACCACTGTGGCTGGAGGTGCCGCTGGTGGAA
CTGTAGCAGGCGGTGCTGCTGGTGGGACAGTAGGAGGTGGAGCAGCTGGA
GGAGTTGCCGGTGGAGGTGCACCCGGAGGAGTTGCTGGTGGAGCCGCTGG
AGGAGTTGAAGGTGGTGCTGCTGGCGGAGTTGAAGGTGGAGCCGCTGGTG
GAGTTGAAGGTGGAGCTGCTGGCGGAGTTGAAGGTGGTGCTGCTGGCGGA
GTTGAAGGTGGTGCTGCTGGAGGTATTGAAGGTGGTGCTGCTGGGGGTAT
TGCTGGAGGGGCTGTTGGGGGAGCTGCCGGTGGAATTGGAGGTACAGAAG
GAGGGGCTGCGGTTGGAGGTGGCGCAGGAAGTGAAGCTGCAGCTGCTATT
GGAGGAGAAGCTGGAGCGGCTGCAGCTGGAGGAGCAGAGGCCGGCGGAGC
AGCAGGCGGATCTGTAGGAGCTGAAGAGGGAGCAAAAGAAGGGGCTTCTG
AAGGTGCAGCGACTGGTGCAGCTGAAGGAGCGGCAGCAGGAGCAGCAGGC
GGTGCAAGTACTGGGGCTGCAGAGGGGGCTGTGGAAAAAGTGGCAGAGGC
TATTGCAAGTGGGGATGGTGATGACCCAGAAAAATTAGTGTCTGCAGCAA
AAGAAGGTGCTTCAAAAGGAGCCGCAGAGGGTGTTGCTACCGGGATATCA
GAAGGTGCAAAACTCGGCGCAGAAGCAGGAGCTGCTGCTGGTGGTTCACA
AGGAGGAGCTGCAGGTGCAGCTGAAGGATCTATCCAAGGAAATGCAGCAG
GAGTAACTGGGGCGATGTCGGGAGGAGCAGAAGGAGGTGCAGCAGTCGGA
GGAGCAGCTGGAGGTGAAGCAGGTGGCCAGGCTGGTGGAGCGATCGGTGC
TTCTGCGGGAGGCGCCGCTGGTGCTGCGGTGGGTGCGGCAGCAGGAGAAG
CAGCCGGTGGTGCAGTTGTTTCAGCTGGAAAGTTATCTGGAAAAGTAGAA
GGCTCCGCAGCAAAGGGAGCAGCTAAGCTAGCAGGTGCAGCTGGTGCTAT
GCAAGCATCAGGAGCTGCACAGACTGCTGGTGCTTTGGGTGCAGCTGGAG
CCGCTGAAAGTGCAGGGATAGCAGGTGGTGCAGCTGGTATGGCTGCAGGT
GGAGGAGGTGCTGCAGCagctggtggtggtggtggttcGATTGCAGGAGG
AGGAGCTATGGCTACTGGCGGTGCTGCTGGAGGTGTTGCTGGAGGTGCAG
CTGGTGGCTCGATGAAAATTGGGGGAGGGATCACAGGAGGTGCAGCAGGA
GCATTGAAAGCTTCAGGAACCGCAGGTGGAGGAGGTAGTATGAAGATTGG
AGGTGGGATGAAAGCGTCAGGAGCTATATCAGGTGGTATATCAGGTGGCG
GCGGGTTAAGTGTTGGTGGTGGTGGTGCCATGAAAATTGGAGGCGGCGGT
GGGTTGAAGGTTGGTGGTGGAGGGGCAATGAAGATGGCCGGAGGAGCGGC
TGCTGGGCTGAAAGCGGCAGGTGGCGCAGGGGGTGCTATGGCGGCAGGAG
GTGGAAGTTCTTCATCGTGGAGTTCAAGCTACGGTTCAAAGACAGGAGGA
TATGGACGAACCATTGATGAGGATGAAGACAAGAAAGAATCGATGAAGAA
ATTATCGCTGAGTGATGTTTGGTCACGAAAGATCGTTGCATTGAAAGCGA
GAGGAAGCGAAGCTAATTTTGTACCCAAAATTGTCACTAGCGGAGGAATC
CCTGGCGAAACAGTAAAGATTCGTAAACCAGCAATGACCAAGAAGTTTGT
ACATTTAATGGAGGATCTGGCTGGTAAATTAGCTGTCAATAACCTGAACG
TAGCAGAagaatttgtgaaaaatttgaagaagaagaaagaagaggAAGTT
TATGAATCGATAGGTGTTACCAGATCTCTTAAAAGTAaatcgaaaatatt
ttcagcaaaaaacgcagtcaaaaaacatttcattaaaaagttgaCAACga
ataacaataacaaacatCATAAGAGAGCCGTTAAAAAGTCCAAAGTCAAC
ATTGGAAGTGCTCTCTAGAAGTGATTTGCTTCGATTTTTAGGACAGTTTT
TagtattgttttcttttcaattaggTATTTTTTTGTGACAATTTCATTCC
CTATTTGGTAAATATTGTATAATAAAGAATTAAAccaataaatcaaaatt
tctattTACCGTATCGGCCCTTCAGTCTGGCCGAAATACAATAAAACAGG
AGTGAACGTAGAAAAAAATTccgcgtaaactttcttggtaccgttggaag
cGGAATTTTATGTAGATCCTCATACTCAGGGCCTCATGATGAGGCCCTTG
GGGAAAACCTTCGGTAAAATCAAGCCTGAAGTGTACTTCTTTGCCCCGAA
ATAGATACGTTTTTGAGCAGTGTACTTGTTATCAGCTACACTAAAAACCT
ATCAAAgctattcaaagtctttgaaagtcagcgCTATTCCCATGTGCTTT
CGCCCTAGGGCTTTCCGCATGCATTTGACCCATTTCATATCATGGATGAC
ACTGTTTAATTGATTGTGGTTTCCAGAAATGTTTGTTGGGAAATCCCCAC
CGCTAtatttttgagacaggggtatacatTGAGTGTTTTAAAAGGCACCT
ACCATTGCAAGGATAGCACTTTTCAAGGCATTTTATAGCGAAAATGGGTC
ctttatgttttattttgccaatttttcccCCAAGGGCCTCAacgtgaggc
tctgagtatgttaaacttcgtaaaattccgcttccaacgataccaagaaa
gtttacgcggaatttttttcaaggtcaacttttatttctgcCAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_46:195439..200161+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066761 ID=TCONS_00066761|Name=TCONS_00066761|organism=Clytia hemisphaerica|type=transcript|length=4723bp|location=Sequence derived from alignment at scaffold_46:195439..200161+ (Clytia hemisphaerica)
GCCCTGTTGATTAGTGCTCATCAATCAAAAAGAAAGATAAAGGGTAAATC
GAGTAAATCACTCGCCTAGACGAGAATCAGTGTATTAATTTGTCTTTTCA
TATTGCTTTACTTTCAGCTATCGCATTGATAGTGTTTGTAGCCATTCAGC
AATGTATTGGTGTAAAGAATCATCAAACTTTCTTCGGGATATACGGAAAG
TTTATCCCAGCCAATAACCAGGGTAGTGTTAAAGGTTCACAAAGAAACAT
TTTACCACGTGTCAATGGCGAAGAGGGAGGGGACGTTAAACTGACCCTCG
GCCCCGCCATAAAGCCCATCAAAACTCGCGATGGACCATTCCAACCAAGT
CAACAAGTCAGTGAGATCATTGGCCAAGTGATGCATTTCGACGAAAATAT
GTTAAACGGGCGTGGTCCATCTGTTGCTCGACATCACCCAGCGCCCTCCG
CCCATCGAGAGGCGGAAGAAGATGAAGAGGAACAAACACCGCCCAATGAT
GAATTGGCGTCTGAACACGGACCAACTTCACAGGAAGAAACAATAGAAAA
CGACGATTACAACAACGTGGAGAAAGAAGAGTACATCGCGAAAGGGCGTG
AAGAAAGCATGCATTTCTCAAAATTGTTAGACCAATTAGAAGATGATCCT
GGACTTGGTAATTCACAGACCGGAAACTTAAAACCGACGCATAAGCTTGA
ACAAGGTCGTCTGTACAATGGCTTCAAAGCAACGCCTAAATTAAAGCATC
CTTTGATTCACCGTAAGAAAGGATGTACGGGGAAGAGATGTGATATAGCA
GGGGGATTTTTTGGCGCAACTGATGGACatttcgaaccaccaaatgaaGA
TGAAGTACCTTATGATGTAGGAGGTAATAGAACCATTATAATTTCGCATT
GATTCAATAATCAATTAAATACGGTACAAACATAGGCCTTGTATGTTCCT
CATACATTTCTTACAAAACCTTATTACAACAAATCTGCAGACATGGTGTA
AGTACTGTGAAACGATATTGAAATAATTTCACTGTAAAATTCTTTGCGTG
TTTAAAACTTAAATACATGTTTTCTTTACGAATCTTTTGATTAAAACCAC
ACCATTTCTTTTATTGCAGACACTCCAATCATTGGCGATGCAGAAGGTCC
GGTCCAAGATGAAGCTATGATGGCTGATACTTTATTTCACCTTCACAAAG
TGTATGACAAAGAGAAACAGGCCTTAGAATTGCTGGGCCACCATAATGGA
CATCACTTTCACCACGGATGTAAGTTTGGACATTTAAAGATAACCATCAT
CATGGCTCGACCAACAAGGCTTCTCAAAACATGAATGAAGTGTTCTAAAA
ATTATTATGTTCTTCTTTGTAAAGCAGCTAAATTGAGTCTGGTAGAATTA
AATCATATTGTCAAAGGACAgttcctttttaatttttagtggAAATTAAA
AGGTTAAGCGATAACGTTAGTTCTCCTTTAACGAATTCATTATTCCATTC
TTCTCATTAGTTGGAGGTCATTACTACCATGAATTTCCACACCACGATGT
CCATGACGCGCATGACGAACATCATCACACTCAAATGATCCCCATCGGTA
TCGAACTACCTAATCACTTGCATTCTCCACAGAACTTTCGTCACCATGGT
GGTGCTACCACTGTGGCTGGAGGTGCCGCTGGTGGAACTGTAGCAGGCGG
TGCTGCTGGTGGGACAGTAGGAGGTGGAGCAGCTGGAGGAGTTGCCGGTG
GAGGTGCACCCGGAGGAGTTGCTGGTGGAGCCGCTGGAGGAGTTGAAGGT
GGCGCTGCTGGCGGCGCTGCTGGAGGAGTTGAAGGTGGCGCTGCCGGAGG
AGCAGCTGGAGAAGCTACTAGTGGAGCCGCTGGAGGTGCTGAAGGTGGTG
CTGCTGGCGGAGTTGAAGGTGGAGCCGCTGGTGGAGTTGAAGGTGGAGCT
GCTGGCGGAGTTGAAGGTGGTGCTGCTGGCGGAGTTGAAGGTGGTGCTGC
TGGAGGTATTGAAGGTGGTGCTGCTGGGGGTATTGCTGGAGGGGCTGTTG
GGGGAGCTGCCGGTGGAATTGGAGGTACAGAAGGAGGGGCTGCGGTTGGA
GGTGGCGCAGGAAGTGAAGCTGCAGCTGCTATTGGAGGAGAAGCTGGAGC
GGCTGCAGCTGGAGGAGCAGAGGCCGGCGGAGCAGCAGGCGGATCTGTAG
GAGCTGAAGAGGGAGCAAAAGAAGGGGCTTCTGAAGGTGCAGCGACTGGT
GCAGCTGAAGGAGCGGCAGCAGGAGCAGCAGGCGGTGCAAGTACTGGGGC
TGCAGAGGGGGCTGTGGAAAAAGTGGCAGAGGCTATTGCAAGTGGGGATG
GTGATGACCCAGAAAAATTAGTGTCTGCAGCAAAAGAAGGTGCTTCAAAA
GGAGCCGCAGAGGGTGTTGCTACCGGGATATCAGAAGGTGCAAAACTCGG
CGCAGAAGCAGGAGCTGCTGCTGGTGGTTCACAAGGAGGAGCTGCAGGTG
CAGCTGAAGGATCTATCCAAGGAAATGCAGCAGGAGTAACTGGGGCGATG
TCGGGAGGAGCAGAAGGAGGTGCAGCAGTCGGAGGAGCAGCTGGAGGTGA
AGCAGGTGGCCAGGCTGGTGGAGCGATCGGTGCTTCTGCGGGAGGCGCCG
CTGGTGCTGCGGTGGGTGCGGCAGCAGGAGAAGCAGCCGGTGGTGCAGTT
GTTTCAGCTGGAAAGTTATCTGGAAAAGTAGAAGGCTCCGCAGCAAAGGG
AGCAGCTAAGCTAGCAGGTGCAGCTGGTGCTATGCAAGCATCAGGAGCTG
CACAGACTGCTGGTGCTTTGGGTGCAGCTGGAGCCGCTGAAAGTGCAGGG
ATAGCAGGTGGTGCAGCTGGTATGGCTGCAGGTGGAGGAGGTGCTGCAGC
agctggtggtggtggtggttcGATTGCAGGAGGAGGAGCTATGGCTACTG
GCGGTGCTGCTGGAGGTGTTGCTGGAGGTGCAGCTGGTGGCTCGATGAAA
ATTGGGGGAGGGATCACAGGAGGTGCAGCAGGAGCATTGAAAGCTTCAGG
AACCGCAGGTGGAGGAGGTAGTATGAAGATTGGAGGTGGTATGGCAGGTG
CAGCTGGAGGAAGTGCAGGAATATCAGGAGGTGCTGGAGGTTCACTTAAG
ATTGGAGGTGGGATGGCAGGTGCAGCTGGAGGAAGTGCAGGAATATCAGG
AGGCGCTGGAGGTTCGCTGAAGATTGGAGGTGGGATGAAAGCGTCAGGAG
CTATATCAGGTGGTATATCAGGTGGCGGCGGGTTAAGTGTTGGTGGTGGT
GGTGCCATGAAAATTGGAGGCGGCGGTGGGTTGAAGGTTGGTGGTGGAGG
GGCAATGAAGATGGCCGGAGGAGCGGCTGCTGGGCTGAAAGCGGCAGGTG
GCGCAGGGGGTGCTATGGCGGCAGGAGGTGGAAGTTCTTCATCGTGGAGT
TCAAGCTACGGTTCAAAGACAGGAGGATATGGACGAACCATTGATGAGGA
TGAAGACAAGAAAGAATCGATGAAGAAATTATCGCTGAGTGATGTTTGGT
CACGAAAGATCGTTGCATTGAAAGCGAGAGGAAGCGAAGCTAATTTTGTA
CCCAAAATTGTCACTAGCGGAGGAATCCCTGGCGAAACAGTAAAGATTCG
TAAACCAGCAATGACCAAGAAGTTTGTACATTTAATGGAGGATCTGGCTG
GTAAATTAGCTGTCAATAACCTGAACGTAGCAGAagaatttgtgaaaaat
ttgaagaagaagaaagaagaggAAGTTTATGAATCGATAGGTGTTACCAG
ATCTCTTAAAAGTAaatcgaaaatattttcagcaaaaaacgcagtcaaaa
aacatttcattaaaaagttgaCAACgaataacaataacaaacatCATAAG
AGAGCCGTTAAAAAGTCCAAAGTCAACATTGGAAGTGCTCTCTAGAAGTG
ATTTGCTTCGATTTTTAGGACAGTTTTTagtattgttttcttttcaatta
ggTATTTTTTTGTGACAATTTCATTCCCTATTTGGTAAATATTGTATAAT
AAAGAATTAAAccaataaatcaaaatttctattTACCGTATCGGCCCTTC
AGTCTGGCCGAAATACAATAAAACAGGAGTGAACGTAGAAAAAAATTccg
cgtaaactttcttggtaccgttggaagcGGAATTTTATGTAGATCCTCAT
ACTCAGGGCCTCATGATGAGGCCCTTGGGGAAAACCTTCGGTAAAATCAA
GCCTGAAGTGTACTTCTTTGCCCCGAAATAGATACGTTTTTGAGCAGTGT
ACTTGTTATCAGCTACACTAAAAACCTATCAAAgctattcaaagtctttg
aaagtcagcgCTATTCCCATGTGCTTTCGCCCTAGGGCTTTCCGCATGCA
TTTGACCCATTTCATATCATGGATGACACTGTTTAATTGATTGTGGTTTC
CAGAAATGTTTGTTGGGAAATCCCCACCGCTAtatttttgagacaggggt
atacatTGAGTGTTTTAAAAGGCACCTACCATTGCAAGGATAGCACTTTT
CAAGGCATTTTATAGCGAAAATGGGTCctttatgttttattttgccaatt
tttcccCCAAGGGCCTCAacgtgaggctctgagtatgttaaacttcgtaa
aattccgcttccaacgataccaagaaagtttacgcggaatttttttcaag
gtcaacttttatttctgcCAGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041750XLOC_041750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066761-exon-scaffold_46-1491911889:195439..196311TCONS_00066761-exon-scaffold_46-1491911889:195439..196311Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1510915933:195439..196311TCONS_00066761-exon-scaffold_46-1510915933:195439..196311Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1575043694:195439..196311TCONS_00066761-exon-scaffold_46-1575043694:195439..196311Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1491911889:196558..196707TCONS_00066761-exon-scaffold_46-1491911889:196558..196707Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1510915933:196558..196707TCONS_00066761-exon-scaffold_46-1510915933:196558..196707Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1575043694:196558..196707TCONS_00066761-exon-scaffold_46-1575043694:196558..196707Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1491911889:196949..197236TCONS_00066761-exon-scaffold_46-1491911889:196949..197236Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1510915933:196949..197236TCONS_00066761-exon-scaffold_46-1510915933:196949..197236Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1575043694:196949..197236TCONS_00066761-exon-scaffold_46-1575043694:196949..197236Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1491911889:197333..198523TCONS_00066761-exon-scaffold_46-1491911889:197333..198523Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1510915933:197333..198523TCONS_00066761-exon-scaffold_46-1510915933:197333..198523Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1575043694:197333..198523TCONS_00066761-exon-scaffold_46-1575043694:197333..198523Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1491911889:198668..200161TCONS_00066761-exon-scaffold_46-1491911889:198668..200161Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1510915933:198668..200161TCONS_00066761-exon-scaffold_46-1510915933:198668..200161Clytia hemisphaericaexon
TCONS_00066761-exon-scaffold_46-1575043694:198668..200161TCONS_00066761-exon-scaffold_46-1575043694:198668..200161Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_46supercontigscaffold_46:195439..200161 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	1.08269	1.84687	0	0.143806	2.16815e-10	0.220839	1.19126	0.961132	1.42816	5.35195	2.54933	2.1251	0	0	1.88055	1.88933	1.73376	1.52375	0.52904	0	0.252321	0.126936	0	0.107201
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066761 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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