|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066752 ID=TCONS_00066752|Name=TCONS_00066752|organism=Clytia hemisphaerica|type=transcript|length=1055bp
ANGCGACACCAGTCATTCGTGCATCGAAACACATTGCCAAGAAAGCAGTC
GATTTGGATTTGGTTCCAGGGCGTAGTCCTATTTCTGTTGCCGCAGCTGC
CATTTATCTGGCTTCACAAGCTTCCGAagataaaaaatcacaaaaagACA
TTGGTGATATTGCTGGAGTTGCAGAGGTGACCATTCGTCAGTCATACAGA
AGTTTAATTGGAAGGGCTGCTGAACTGTTCCCACCAGATTTCGTCTTCCA
TACACCGATTGAGAAATTACCCACCAGTTGAACGGAAATAGCTTCTTTCT
TGTTTTGTATCGTAAGCTTTTATTTATTGTTGTAGACAATCTGTAGGACG
CATGGCACCTGCACAAAGGAATTGTTGGACAGATAAATGAACTATTTCAA
CAAAGTATACATGTATTTACCTCGAACATTGTCAAAAAACACAGCATAac
ggaaaataaaaatgaaatctaaAAAATATGCAGTATTTTTAAAAGGATTT
TTTTAACGTAATATATCAAAGTTTTCATTTGAGTTAattgtttttaaatc
tttttactAAAGCTTCCATTAGTACGACGCGGTTCCCTATTTTTAAGGAC
GCAAATTTCTTTCCGAAAACACAGTTATATTATCTCACTAGATCGGAGGA
AAGAACTGCCCTTAACTTTAaggaaatgttttaaaaataggAGAACGGAT
TGTACCGACTAAGGCTCTGTCCATTATTATGACGACAGAACAACCGTCAA
TATTGAGGGAACTGaatgttttcactttttctGAGAGATCTTTTAGTGCG
AAAGTGGAGAATCTTTATGTTACTTATGACTTTACTTTCACATTACATTT
GATATTGAATCAAAGCTTCTACACCTTCTAAACCATTCTCGAAAACAGGA
ATACAAGGAAAACCACCTCCCCTTTGAATCTATCGAACATGTATTATTTG
CGTTaactttttctgaaagaaagCAGTGTAAActtaattttgttttattt
tttaccacaagaatttaaattttcgggAATTTATTgactcaaaaatgaaa
aaaat Run BLAST on NCBI transcript from alignment at scaffold_46:84560..88394+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066752 ID=TCONS_00066752|Name=TCONS_00066752|organism=Clytia hemisphaerica|type=transcript|length=3835bp|location=Sequence derived from alignment at scaffold_46:84560..88394+ (Clytia hemisphaerica)
ANGCGACACCAGTCATTCGTGCATCGAAACACATTGCCAAGAAAGCAGTC
GATTTGGATTTGGTTCCAGGGTAATTATTTGTTGAACATgtacaagcttt
ttttataaaaatccatttataagaatgtccatgatgaaaatggccaaaaa
attaagaataatgctaagaatatcaccatcatggaattttgctactcaag
ctaagaatactgtaagaatattttaagatgactttcccaaaaaagtaaag
aatatcaatgatgaaatggatttacacaattcttataaaaaaagtgtgta
tcgCAAAGTTAATTGTCAGGAATAGAAAATGCTCAGAAATTACTGATACA
GAACAAGCGGCTTGAAAACATTTGAACTAACATTTCTCTAATTGAAAGTC
AATTCTAAAAGACTTCTATTCGTTTGGAAATTTCTTGTTTGATTTTTATC
ATTCTAACTTGGAAGTATAAAACCAAGTCAAATTTTCTTGACTTTGAACT
TTACAATGCTTTCTGGGTGCTATTTTATTGTTTCCTTTTTTACAGGCGTA
GTCCTATTTCTGTTGCCGCAGCTGCCATTTATCTGGCTTCACAAGCTTCC
GAagataaaaaatcacaaaaaggtGTGTATACCAAGTCAACTCCAGTtgt
ctttaaccctattcgtactatggggctgtttctgttctgTTGCGAAACTA
TTGGTAATtgctcctgaaataataaagcttttggcatgaaatttttaact
tttatttagcttcaaaataaaaaaagatttgaccACTAAacattttcaca
ccttgagcatgatgacacaCAAAAATTAACACAATAGCTatacaaattta
tttattttttcaaatagatCGTTTAAATTGTAATTTATTGAATGTTTGGG
ATAAAATAAGTATTTTAGACTCAgagaacttttttctaaagcctttgtta
gaatgtcaaaagttaccttatatgACAAGGAACTTGTGTGCCAAATTCCA
TCCAgaaagatcaaaagttaaggggtggtacaggaacagctccaccctag
ttttgaaccgcccaTAAAGTATTTAATTTGAATCATGCATGTAGTTCTAT
GTAGTCATGCCGTTTTATAAGCCCTGCAAAATTAGGTTTTTACAATAAAA
TGAAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNAGATGACTTTCccaaaaaagtaaaga
atatcaatgatgaaatggatttacacaattcttataaaaaaaatgtgtat
cgcAAAGTTAATTGTCAGGAATAGAAAATGCTCAGAACTTACTGATACAG
AACAAGCGACttgaaaacatttgaaataACATCTTTCTCTAATTGAAAGT
CACTTCTAAAAGACTTCTATTCGTTTGGAAATTTCTTGTTTGATTTTTAT
CATTCTAACTTGGAAGTAAAGTAAGTCAAATTTTCTTGACTTTGAACTTT
GCAATGCTTTCTGTATGCTAttttattgtttctttttttacagGCGTAGT
CCTATTTCTGTTGCCGCAGCTGCCATTTATCTGGCTTCACAAGCTTCCGA
agataaaaaatcacaaaaaggtGTGTATACCAAGTCAACTCCAGTtgtct
ttaaccctattcgtactatggggctgtttctgttctgTTGCGAAACTATT
GGTAATtgctcctgaaataataaagcttttggcatgaaatttttaacttt
tatttagcttcaaaataaaaaaagatttgaccACTAAacattttcacacc
ttgagcatgatgacacaCAAAAATTAACACAATAGCTatacaaatttatt
tattttttcaaatagatCGTTTAAATTGTAATTTATTGAATGTTTGGGAT
AAAATAAGTATTTTAGACTCAgagaacttttttctaaagcctttgttaga
atgtcaaaagttaccttatatgACAAGGAACTTGTGTGCCAAATTCCATC
CAgaaagatcaaaagttaaggggtggtacaggaacagctccaccctagtt
ttgaaccgcccaTAAAGTATTTAATTTGAATCATGCATGTAGTTCTATGT
AGTCATGCCGTTTTATAAGCCCTGCAAAATTAGGTTTTTACAATAAAAAG
AAGTTCCTTGGGTCCTAGATGCACTACAAGAAAGCCACGATCAATACAAA
ATGTTTTATGGCCccattttttaaacctttatttcCTGGTTGATTTATAG
CAAATTTGATTTCCTCTTTTTGTACAGACATTGGTGATATTGCTGGAGTT
GCAGAGGTGACCATTCGTCAGTCATACAGAAGTTTAATTGGAAGGGCTGC
TGAACTGTTCCCACCAGATTTCGTCTTCCATACACCGATTGAGAAATTAC
CCACCAGTTGAACGGAAATAGCTTCTTTCTTGTTTTGTATCGTAAGCTTT
TATTTATTGTTGTAGACAATCTGTAGGACGCATGGCACCTGCACAAAGGA
ATTGTTGGACAGATAAATGAACTATTTCAACAAAGTATACATGTATTTAC
CTCGAACATTGTCAAAAAACACAGCATAacggaaaataaaaatgaaatct
aaAAAATATGCAGTATTTTTAAAAGGATTTTTTTAACGTAATATATCAAA
GTTTTCATTTGAGTTAattgtttttaaatctttttactAAAGCTTCCATT
AGTACGACGCGGTTCCCTATTTTTAAGGACGCAAATTTCTTTCCGAAAAC
ACAGTTATATTATCTCACTAGATCGGAGGAAAGAACTGCCCTTAACTTTA
aggaaatgttttaaaaataggAGAACGGATTGTACCGACTAAGGCTCTGT
CCATTATTATGACGACAGAACAACCGTCAATATTGAGGGAACTGaatgtt
ttcactttttctGAGAGATCTTTTAGTGCGAAAGTGGAGAATCTTTATGT
TACTTATGACTTTACTTTCACATTACATTTGATATTGAATCAAAGCTTCT
ACACCTTCTAAACCATTCTCGAAAACAGGAATACAAGGAAAACCACCTCC
CCTTTGAATCTATCGAACATGTATTATTTGCGTTaactttttctgaaaga
aagCAGTGTAAActtaattttgttttattttttaccacaagaatttaaat
tttcgggAATTTATTgactcaaaaatgaaaaaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066752-exon-scaffold_46-1491911889:84560..84629 | TCONS_00066752-exon-scaffold_46-1491911889:84560..84629 | Clytia hemisphaerica | exon |
| TCONS_00066752-exon-scaffold_46-1510915933:84560..84629 | TCONS_00066752-exon-scaffold_46-1510915933:84560..84629 | Clytia hemisphaerica | exon |
| TCONS_00066752-exon-scaffold_46-1575043694:84560..84629 | TCONS_00066752-exon-scaffold_46-1575043694:84560..84629 | Clytia hemisphaerica | exon |
| TCONS_00066752-exon-scaffold_46-1491911889:85105..85181 | TCONS_00066752-exon-scaffold_46-1491911889:85105..85181 | Clytia hemisphaerica | exon |
| TCONS_00066752-exon-scaffold_46-1510915933:85105..85181 | TCONS_00066752-exon-scaffold_46-1510915933:85105..85181 | Clytia hemisphaerica | exon |
| TCONS_00066752-exon-scaffold_46-1575043694:85105..85181 | TCONS_00066752-exon-scaffold_46-1575043694:85105..85181 | Clytia hemisphaerica | exon |
| TCONS_00066752-exon-scaffold_46-1491911889:87487..88394 | TCONS_00066752-exon-scaffold_46-1491911889:87487..88394 | Clytia hemisphaerica | exon |
| TCONS_00066752-exon-scaffold_46-1510915933:87487..88394 | TCONS_00066752-exon-scaffold_46-1510915933:87487..88394 | Clytia hemisphaerica | exon |
| TCONS_00066752-exon-scaffold_46-1575043694:87487..88394 | TCONS_00066752-exon-scaffold_46-1575043694:87487..88394 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_46 | supercontig | scaffold_46:84560..88394 + |
Blast
BLAST of TCONS_00066752 vs. Swiss-Prot (Human)
Match: TF2B (Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 2.948e-24 Identity = 62/84 (73.81%), Postives = 75/84 (89.29%), Query Frame = 3
Query: 21 ASKHIAKKAVDLDLVPGRSPIXXXXXXXXXXXXXXEDKKSQKDIGDIAGVAEVTIRQSYRSLIGRAAELFPPDFVFHTPIEKLP 272
A+ HIA+KAV+LDLVPGRSPISVAAAAIY+ASQAS +K++QK+IGDIAGVA+VTIRQSYR + RA +LFP DF F TP++KLP
Sbjct: 231 AATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDKLP 314
The following BLAST results are available for this feature:
|
