TCONS_00066746 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066746
Unique NameTCONS_00066746
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066746 ID=TCONS_00066746|Name=TCONS_00066746|organism=Clytia hemisphaerica|type=transcript|length=367bp
GTCAAATTTTGATTTAGATTAGAAACAACTGAGATTTTTGTATAGTATAT
GGTCATGTATATAGGTCATGTTTCCTACATGTGTAACTgttaaatatcaa
aagaaatttaaacTAAAGAATAATTACGTTATAGTTAAATTTTCCAGCTT
AAGGTATGAAAAATGTTTTGTAAACACAATGATAGTCGTACATATACAGA
GTCTATTTCTTTGCTTATTTTCTTTGCAGTCCTGATGGTCCTCTTAATTT
TGGTTCACCTCCCCTTTTAACAGGAAAAAGTTTGGCTGATGGCGAAAAAT
CTTTTAACAATTTATCAGTGATCGTTGGTTTTAACGAATAACTACCATGG
TTCGTAAAAGGCAGAGG
Run BLAST on NCBI

transcript from alignment at scaffold_459:185841..186207

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066746 ID=TCONS_00066746|Name=TCONS_00066746|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at scaffold_459:185841..186207 (Clytia hemisphaerica)
CCTCTGCCTTTTACGAACCATGGTAGTTATTCGTTAAAACCAACGATCAC
TGATAAATTGTTAAAAGATTTTTCGCCATCAGCCAAACTTTTTCCTGTTA
AAAGGGGAGGTGAACCAAAATTAAGAGGACCATCAGGACTGCAAAGAAAA
TAAGCAAAGAAATAGACTCTGTATATGTACGACTATCATTGTGTTTACAA
AACATTTTTCATACCTTAAGCTGGAAAATTTAACTATAACGTAATTATTC
TTTAgtttaaatttcttttgatatttaacAGTTACACATGTAGGAAACAT
GACCTATATACATGACCATATACTATACAAAAATCTCAGTTGTTTCTAAT
CTAAATCAAAATTTGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041742XLOC_041742Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066746-exon-scaffold_459-1491911889:185841..186207TCONS_00066746-exon-scaffold_459-1491911889:185841..186207Clytia hemisphaericaexon
TCONS_00066746-exon-scaffold_459-1510915933:185841..186207TCONS_00066746-exon-scaffold_459-1510915933:185841..186207Clytia hemisphaericaexon
TCONS_00066746-exon-scaffold_459-1575043694:185841..186207TCONS_00066746-exon-scaffold_459-1575043694:185841..186207Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_459supercontigscaffold_459:185841..186207 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.224543	0.218964	0	0	0.605617	0.239283	0.57737	1.08105	0	0	0	0.149544	0.298673	0	0	0	0.168563	0.345544	0	0	0	0.635364	0.514912	2.34065	4.09839	3.44255	4.0026	4.60028	0.249225	0.253921
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066746 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top