TCONS_00066741 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066741
Unique NameTCONS_00066741
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length753

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066741 ID=TCONS_00066741|Name=TCONS_00066741|organism=Clytia hemisphaerica|type=transcript|length=753bp
AATATCtctattttcaaaatctctATCCAAACGACAAGATGCCTATGACC
AAGTGCGTATCCAGAACCACTTGCATCACTTTTTGATTTCACTGATGGAA
AATCGTcagcgctatcagaatcatgaAAAGCGTGCCAAGGGACTGGATAC
AAGTTTGGCCTATGAACTCCTGTGTAGCTTACGTATCAGTCTTTGTGCTA
AAATTACAATTTCCCTTTTCAAGATCTCATTCCTTCGATGCAAGTATTTT
TGGGTAGATTTTCTCATAAAATGGTCAAACTggttcaatttcaaaaatag
tgCGATGTTCTTCAATTTGGGTAAATATTCCAATCCTTCGTGTCTTTGTC
TTTCTTCCACTGGAAATTTTCGAGTCCTTCTTATAAAGGTTTTTCCAGCG
TCTTCAATTTCGTCTTCCCGTTTTCGTATGGACCTCAGgatattgaattt
tgaaggcaAATCTTTTCTAATTGTCTTTCTCCACTCATTATCCATCGTAT
CAAGAATTGATCTTTTCCGTCCGGGTATGCGTAAAACACAACACgacaaa
acctttaaacaaCATTCCCCATAATCCTTTGCGCTTGTCAAACGTTTATA
TATTTGTTGTCGTATATTGTTTGACTCTTCCGTGTCTCGATTATTAGCGT
ACACCGATTCAGTTTGGTATATAAAGACAAACAATAAGTATACTAGACTG
ATGCACTTCATCTCTTCatatatttcaatatttgttCTGAATCTGAAATC
TAA
Run BLAST on NCBI

protein sequence of TCONS_00066741-protein

>TCONS_00066741-protein ID=TCONS_00066741-protein|Name=TCONS_00066741-protein|organism=Clytia hemisphaerica|type=polypeptide|length=197bp
LDFRFRTNIEIYEEMKCISLVYLLFVFIYQTESVYANNRDTEESNNIRQQ
IYKRLTSAKDYGECCLKVLSCCVLRIPGRKRSILDTMDNEWRKTIRKDLP
SKFNILRSIRKREDEIEDAGKTFIRRTRKFPVEERQRHEGLEYLPKLKNI
ALFLKLNQFDHFMRKSTQKYLHRRNEILKREIVILAQRLIRKLHRSS
Run BLAST on NCBI

transcript from alignment at scaffold_459:63142..63894

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066741 ID=TCONS_00066741|Name=TCONS_00066741|organism=Clytia hemisphaerica|type=transcript|length=753bp|location=Sequence derived from alignment at scaffold_459:63142..63894 (Clytia hemisphaerica)
TTAGATTTCAGATTCAGaacaaatattgaaatatatGAAGAGATGAAGTG
CATCAGTCTAGTATACTTATTGTTTGTCTTTATATACCAAACTGAATCGG
TGTACGCTAATAATCGAGACACGGAAGAGTCAAACAATATACGACAACAA
ATATATAAACGTTTGACAAGCGCAAAGGATTATGGGGAATGttgtttaaa
ggttttgtcGTGTTGTGTTTTACGCATACCCGGACGGAAAAGATCAATTC
TTGATACGATGGATAATGAGTGGAGAAAGACAATTAGAAAAGATTtgcct
tcaaaattcaatatcCTGAGGTCCATACGAAAACGGGAAGACGAAATTGA
AGACGCTGGAAAAACCTTTATAAGAAGGACTCGAAAATTTCCAGTGGAAG
AAAGACAAAGACACGAAGGATTGGAATATTTACCCAAATTGAAGAACATC
GcactatttttgaaattgaaccAGTTTGACCATTTTATGAGAAAATCTAC
CCAAAAATACTTGCATCGAAGGAATGAGATCTTGAAAAGGGAAATTGTAA
TTTTAGCACAAAGACTGATACGTAAGCTACACAGGAGTTCATAGGCCAAA
CTTGTATCCAGTCCCTTGGCACGCTTTtcatgattctgatagcgctgACG
ATTTTCCATCAGTGAAATCAAAAAGTGATGCAAGTGGTTCTGGATACGCA
CTTGGTCATAGGCATCTTGTCGTTTGGATagagattttgaaaatagaGAT
ATT

Coding sequence (CDS) from alignment at scaffold_459:63142..63894

>TCONS_00066741 ID=TCONS_00066741|Name=TCONS_00066741|organism=Clytia hemisphaerica|type=CDS|length=594bp|location=Sequence derived from alignment at scaffold_459:63142..63894 (Clytia hemisphaerica)
TTAGATTTCAGATTCAGaacaaatattgaaatatatGAAGAGATGAAGTG
CATCAGTCTAGTATACTTATTGTTTGTCTTTATATACCAAACTGAATCGG
TGTACGCTAATAATCGAGACACGGAAGAGTCAAACAATATACGACAACAA
ATATATAAACGTTTGACAAGCGCAAAGGATTATGGGGAATGttgtttaaa
ggttttgtcGTGTTGTGTTTTACGCATACCCGGACGGAAAAGATCAATTC
TTGATACGATGGATAATGAGTGGAGAAAGACAATTAGAAAAGATTtgcct
tcaaaattcaatatcCTGAGGTCCATACGAAAACGGGAAGACGAAATTGA
AGACGCTGGAAAAACCTTTATAAGAAGGACTCGAAAATTTCCAGTGGAAG
AAAGACAAAGACACGAAGGATTGGAATATTTACCCAAATTGAAGAACATC
GcactatttttgaaattgaaccAGTTTGACCATTTTATGAGAAAATCTAC
CCAAAAATACTTGCATCGAAGGAATGAGATCTTGAAAAGGGAAATTGTAA
TTTTAGCACAAAGACTGATACGTAAGCTACACAGGAGTTCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041737XLOC_041737Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066741-exon-scaffold_459-1491911889:63142..63894TCONS_00066741-exon-scaffold_459-1491911889:63142..63894Clytia hemisphaericaexon
TCONS_00066741-exon-scaffold_459-1510915933:63142..63894TCONS_00066741-exon-scaffold_459-1510915933:63142..63894Clytia hemisphaericaexon
TCONS_00066741-exon-scaffold_459-1575043694:63142..63894TCONS_00066741-exon-scaffold_459-1575043694:63142..63894Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066741-proteinTCONS_00066741-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_459supercontigscaffold_459:63142..63894 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.782597	0.763156	0.147683	0.65018	0.263844	0.416986	1.59307	1.17743	2.14331	1.4976	1.58575	1.04241	4.42409	4.23411	0.444385	0.794821	0.783324	0.652341	0.138653	0.14509	0.25222	0.184536	0.149552	0.407893	0.63018	0.749894	0.0894247	0	0.0723852	0.073749
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066741 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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