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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066740 ID=TCONS_00066740|Name=TCONS_00066740|organism=Clytia hemisphaerica|type=transcript|length=1255bp
GATGTACAATCAAGCGATTGAGATGAGTTTGATTTCATCAGTTAGTTTTG
TTCTAAATTTTGTACCAATATTTTGAGATTCACTTTAAATATAACTATAT
TTGAAAGAATACACAgactaaaatataaaataagtgATTGAACTATTTTA
CATTAAATTGATTTATAAGCGGTTATTTCACAGTAAGTTAGGATTTGTAA
AAGTTCAGGCCAATGGCGTGTCCGATGTTAATAATATATACATTCAAACA
AGACTGTCTAGTTTTTTAAACAAAGTCTGTTTCGTCCGGAAACGCTAAAA
GTTCATGGATGAGGggcataaaaaaatcattaaaatgatATAGAAACCcg
ttaaaaatacaaaaatagccGTCCCAAAGGTTGACGGCATCATTAAAAAG
CTGTCATCGCCAAGTTTACACTGACATTAATAGCCTCGATATTCGCGTTA
ATTAAAGTGTTTCTTTACTCAGCAAAATCGTAACACATTCCCTGGTTTGG
TTAGGATCCAcgagaaaaaacacgaaaattaattaatttgcTGTTAAAAT
AAGTAGCCAGTAAGCTGCTGTCCAATTTGGTTTTATCATTCCATGTTGTG
TTTTAGAAATGCTATGAACTATCCAGTACAGGCAAATACAGGACTCGATA
GAGAATATTTTGTTTCAGCCACATCATTTCCTCTGTACCTCTGTATTTTC
TAACGCTTTATTAAGGTGCACTTAATGCCCCTACATCTGCACTTATTAAT
CAAGACAACTTTCTTCAGCTTAAATCCTATGTTTATTTTCGGGCAAAGCA
TCAAAACACGCACAACTTGATAAGACTCCGGCTCACATTGTCTACAGTCT
TCGAAAATCCCATTCACGTCATTACTGGCTCCACTGCGTCGCACGGGAAT
AAAATACGACGCACAAGAGCCACCACAATACTTATTTGGAATAGTCAACG
GTAAACAGTCTGGATCTTTGATAGTCTGCATGTATCGGGTCGCTTTGCAC
GTACTCAAAGGGGACTGGAAACCATTCCTGAAAACCATTGCGTAATATGA
TTTTCCACTTTTTAGAGGGTCGTTGAAACGTTTGACACGTAGTGCTTTAT
CCAGTGTTGCGCCACATATCGTTTCCATGGAGATCAACACAAAAGTGATG
AAAATTGCTATCTTCTTCATTGTAATGTATTTCTTTAATATTGCTTCAAA
tgagaaaacaatcaaaaattcatAAGTTAGCAGATATCGTTGATATCAAA
ATTGA Run BLAST on NCBI protein sequence of TCONS_00066740-protein >TCONS_00066740-protein ID=TCONS_00066740-protein|Name=TCONS_00066740-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MKKIAIFITFVLISMETICGATLDKALRVKRFNDPLKSGKSYYAMVFRNG
FQSPLSTCKATRYMQTIKDPDCLPLTIPNKYCGGSCASYFIPVRRSGASN
DVNGIFEDCRQCEPESYQVVRVLMLCPKINIGFKLKKVVLINKCRCRGIK
CTLIKR Run BLAST on NCBI transcript from alignment at scaffold_459:43534..44788 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066740 ID=TCONS_00066740|Name=TCONS_00066740|organism=Clytia hemisphaerica|type=transcript|length=1255bp|location=Sequence derived from alignment at scaffold_459:43534..44788 (Clytia hemisphaerica)
TCAATTTTGATATCAACGATATCTGCTAACTTatgaatttttgattgttt
tctcaTTTGAAGCAATATTAAAGAAATACATTACAATGAAGAAGATAGCA
ATTTTCATCACTTTTGTGTTGATCTCCATGGAAACGATATGTGGCGCAAC
ACTGGATAAAGCACTACGTGTCAAACGTTTCAACGACCCTCTAAAAAGTG
GAAAATCATATTACGCAATGGTTTTCAGGAATGGTTTCCAGTCCCCTTTG
AGTACGTGCAAAGCGACCCGATACATGCAGACTATCAAAGATCCAGACTG
TTTACCGTTGACTATTCCAAATAAGTATTGTGGTGGCTCTTGTGCGTCGT
ATTTTATTCCCGTGCGACGCAGTGGAGCCAGTAATGACGTGAATGGGATT
TTCGAAGACTGTAGACAATGTGAGCCGGAGTCTTATCAAGTTGTGCGTGT
TTTGATGCTTTGCCCGAAAATAAACATAGGATTTAAGCTGAAGAAAGTTG
TCTTGATTAATAAGTGCAGATGTAGGGGCATTAAGTGCACCTTAATAAAG
CGTTAGAAAATACAGAGGTACAGAGGAAATGATGTGGCTGAAACAAAATA
TTCTCTATCGAGTCCTGTATTTGCCTGTACTGGATAGTTCATAGCATTTC
TAAAACACAACATGGAATGATAAAACCAAATTGGACAGCAGCTTACTGGC
TACTTATTTTAACAgcaaattaattaattttcgtgttttttctcgTGGAT
CCTAACCAAACCAGGGAATGTGTTACGATTTTGCTGAGTAAAGAAACACT
TTAATTAACGCGAATATCGAGGCTATTAATGTCAGTGTAAACTTGGCGAT
GACAGCTTTTTAATGATGCCGTCAACCTTTGGGACggctatttttgtatt
tttaacgGGTTTCTATatcattttaatgatttttttatgccCCTCATCCA
TGAACTTTTAGCGTTTCCGGACGAAACAGACTTTGTTTAAAAAACTAGAC
AGTCTTGTTTGAATGTATATATTATTAACATCGGACACGCCATTGGCCTG
AACTTTTACAAATCCTAACTTACTGTGAAATAACCGCTTATAAATCAATT
TAATGTAAAATAGTTCAATcacttattttatattttagtcTGTGTATTCT
TTCAAATATAGTTATATTTAAAGTGAATCTCAAAATATTGGTACAAAATT
TAGAACAAAACTAACTGATGAAATCAAACTCATCTCAATCGCTTGATTGT
ACATC Coding sequence (CDS) from alignment at scaffold_459:43534..44788 >TCONS_00066740 ID=TCONS_00066740|Name=TCONS_00066740|organism=Clytia hemisphaerica|type=CDS|length=471bp|location=Sequence derived from alignment at scaffold_459:43534..44788 (Clytia hemisphaerica)
ATGAAGAAGATAGCAATTTTCATCACTTTTGTGTTGATCTCCATGGAAAC
GATATGTGGCGCAACACTGGATAAAGCACTACGTGTCAAACGTTTCAACG
ACCCTCTAAAAAGTGGAAAATCATATTACGCAATGGTTTTCAGGAATGGT
TTCCAGTCCCCTTTGAGTACGTGCAAAGCGACCCGATACATGCAGACTAT
CAAAGATCCAGACTGTTTACCGTTGACTATTCCAAATAAGTATTGTGGTG
GCTCTTGTGCGTCGTATTTTATTCCCGTGCGACGCAGTGGAGCCAGTAAT
GACGTGAATGGGATTTTCGAAGACTGTAGACAATGTGAGCCGGAGTCTTA
TCAAGTTGTGCGTGTTTTGATGCTTTGCCCGAAAATAAACATAGGATTTA
AGCTGAAGAAAGTTGTCTTGATTAATAAGTGCAGATGTAGGGGCATTAAG
TGCACCTTAATAAAGCGTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066740-exon-scaffold_459-1491911889:43534..44788 | TCONS_00066740-exon-scaffold_459-1491911889:43534..44788 | Clytia hemisphaerica | exon |
| TCONS_00066740-exon-scaffold_459-1510915933:43534..44788 | TCONS_00066740-exon-scaffold_459-1510915933:43534..44788 | Clytia hemisphaerica | exon |
| TCONS_00066740-exon-scaffold_459-1575043694:43534..44788 | TCONS_00066740-exon-scaffold_459-1575043694:43534..44788 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_459 | supercontig | scaffold_459:43534..44788 . |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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