TCONS_00066709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066709
Unique NameTCONS_00066709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length789

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066709 ID=TCONS_00066709|Name=TCONS_00066709|organism=Clytia hemisphaerica|type=transcript|length=789bp
tttttatcattctgCTAGGCTAGACGGAACATTTGTTAATTTACTGATCT
ATTTTGAACCCTAATTGCAGAAACATTCAGCCAATCAGACTCAGTTATTG
GATGACCCTTTAAGTTACCCGtcattcttatgaaattgtatcaatataaa
aaagagggctttttcttcttcctttaatattttcactgcAGGATTTAGGG
TGAAAATTGGTTAGTTAGTTGGTAAACATTGTCTATGGGACAAGGGTTCG
TTTCACCGAAGTAATAAATTGAAAAGAATGTTTCAAAAGCTTGTTTCAGT
TGTTTTCGTATTTGCATGTTAAATTCAAATAGAGAAAGGAATGGGGCGAT
TTCTCAATCGATATATTTTCCAGTTTGTAATATTTTATCGCCTATTTGCA
AACGAGGCTTTTTTTGCTAAGATTTGTTTTCGTTTAGTATTATCTTAGTT
GTTTTGTTAGCAAATACTTTGAGATTTATACATATTTATAATAAAGAAGA
ACTTTAGTTAGTATGAGAGAAAATTGCTCCATAATCCTCTATCACAATAT
GATTTCCATGTtttgaaaggttctttttaGGGATCTGTGAGCAGCTATAT
GTGATGACAAAATTTAATCTTTATGCATGAGATTTGGTTTCGACTCCTAT
TCGGTGGTCAACTTCATTCATATTGATTTTTTGCTTCATTCTTCGGTGGT
TCGGTAGCCTTGTTGATTTTTCTTCATCGTCACTACAGTATAGAAGTTtt
tatattggaagtttatcgtggtttggatcacgagattta
Run BLAST on NCBI

transcript from alignment at scaffold_458:88519..89307

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066709 ID=TCONS_00066709|Name=TCONS_00066709|organism=Clytia hemisphaerica|type=transcript|length=789bp|location=Sequence derived from alignment at scaffold_458:88519..89307 (Clytia hemisphaerica)
taaatctcgtgatccaaaccacgataaacttccaatataaaAACTTCTAT
ACTGTAGTGACGATGAAGAAAAATCAACAAGGCTACCGAACCACCGAAGA
ATGAAGCAAAAAATCAATATGAATGAAGTTGACCACCGAATAGGAGTCGA
AACCAAATCTCATGCATAAAGATTAAATTTTGTCATCACATATAGCTGCT
CACAGATCCCtaaaaagaacctttcaaaACATGGAAATCATATTGTGATA
GAGGATTATGGAGCAATTTTCTCTCATACTAACTAAAGTTCTTCTTTATT
ATAAATATGTATAAATCTCAAAGTATTTGCTAACAAAACAACTAAGATAA
TACTAAACGAAAACAAATCTTAGCAAAAAAAGCCTCGTTTGCAAATAGGC
GATAAAATATTACAAACTGGAAAATATATCGATTGAGAAATCGCCCCATT
CCTTTCTCTATTTGAATTTAACATGCAAATACGAAAACAACTGAAACAAG
CTTTTGAAACATTCTTTTCAATTTATTACTTCGGTGAAACGAACCCTTGT
CCCATAGACAATGTTTACCAACTAACTAACCAATTTTCACCCTAAATCCT
gcagtgaaaatattaaaggaagaagaaaaagccctcttttttatattgat
acaatttcataagaatgaCGGGTAACTTAAAGGGTCATCCAATAACTGAG
TCTGATTGGCTGAATGTTTCTGCAATTAGGGTTCAAAATAGATCAGTAAA
TTAACAAATGTTCCGTCTAGCCTAGcagaatgataaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041715XLOC_041715Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066709-exon-scaffold_458-1491911889:88519..89307TCONS_00066709-exon-scaffold_458-1491911889:88519..89307Clytia hemisphaericaexon
TCONS_00066709-exon-scaffold_458-1510915933:88519..89307TCONS_00066709-exon-scaffold_458-1510915933:88519..89307Clytia hemisphaericaexon
TCONS_00066709-exon-scaffold_458-1575043694:88519..89307TCONS_00066709-exon-scaffold_458-1575043694:88519..89307Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_458supercontigscaffold_458:88519..89307 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.0824892	0	0	0	0	0	0	0	0.122044	0.464727	0.312602	0.633664	0.413271	0.51772	0.19507	0.0680424	0.236565	0.605787	0.771481	1.0202	0.525391	0.468899	0.0838742	0	0.950492	0.345858
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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