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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066704 ID=TCONS_00066704|Name=TCONS_00066704|organism=Clytia hemisphaerica|type=transcript|length=535bp aggaagaaaataaaaataacttcaAGATTGCTACCTTACTGAAAAACGAG ATGTCAGAAAAGAATGATGGGAAAAGTGAGAGAGGTTTACTGGCTAGAAC AGCAACTTATACTTCTAAAAAAGCTAGAAGAGCACAAACCAAGCTGAAAC AACGTGTTGGCAAAGGGGATGAAACAAAGGATGAAGTCTTCGATGAATTT GTATTCAACTTCAATAAGCAACAGGCATCAGCAACAAGACTGCATGCAGA GCTAAAGAATTATATGCGGTGTATTACtgCTATGCAAGTTGCTCATACAA ATTTTGGGGAAGCTGTGAAGGAAGTATATGAGTCAGATTGGAGTTGTCGT CCAAAAATGGTTGATTATTTTAAGGAATATGACAGCAACTGGACAAAACT AAGGCACCGTGTTTCTGAAGAAGTTCTTGAGCCACTTACGTCCTACCTCA AACCCTTTCCAGATGTCAAGacaaaaatcagcaaaagaGCAAGAAAATTG GTAGACTATGATCATTCAAGGCATGCAGTTGACGT Run BLAST on NCBI protein sequence of TCONS_00066704-protein >TCONS_00066704-protein ID=TCONS_00066704-protein|Name=TCONS_00066704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=177bp
EENKNNFKIATLLKNEMSEKNDGKSERGLLARTATYTSKKARRAQTKLKQ RVGKGDETKDEVFDEFVFNFNKQQASATRLHAELKNYMRCITAMQVAHTN FGEAVKEVYESDWSCRPKMVDYFKEYDSNWTKLRHRVSEEVLEPLTSYLK PFPDVKTKISKRARKLVDYDHSRHAVD Run BLAST on NCBI transcript from alignment at scaffold_458:103464..107214- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066704 ID=TCONS_00066704|Name=TCONS_00066704|organism=Clytia hemisphaerica|type=transcript|length=3751bp|location=Sequence derived from alignment at scaffold_458:103464..107214- (Clytia hemisphaerica) AGGAAGAAAATAAAAATAACTTCAAGATTGCTACCTTACTGAAAAACGAG
ATGTCAGAAAAGAATGATGGGAAAAGTGAGAGAGGTTTACTGGCTAGAAC
AGCAACTTATACTTCTAAAAAAGCTAGAAGAGCACAAACCAAGGTATTGT
AATTGTTTTTCAAACATTTAATGGTCTTGAGCTGGTCAAAATATAGTCCT
AAACTCAAATCAAAAATTAAACAAAAACTTTTATCAAGGATACAACACAT
CTGATAAATCCTGCATAGTAACTAGCCAAGCTTTTTTTTTAAGATGCAGG
GTATATTTAAGCACTTAGAAAATACCCAGACAGTGATATAGATATTGTTA
ATGGCATATACTTTTCTCCTCTTTTTGCATGCTGCAATTACGCACAAAAT
TTCTTTGACAAATAGAAACTTTTAAGTAATTTAAAAGAGAATTGAGGTGT
ATCAAATGTATTTCCTGCACTCCTAGAATGTTCTTCATTGTGATTTATAG
AAATATTATAGTCAAGTTTTATTCTTTGTTTCAGCTGAAACAACGTGTTG
GCAAAGGGGATGAAACAAAGGATGAAGTCTTCGATGAATTTGTATTCAAC
TTCAATAAGCAACAGGCTAGTTAAAATATGTTATTAGGATAAAACGAGGA
TTTTTGTCTATTAACTATGATGGTATTTTTTCTTTAAAAAAATATTTTTT
TAATGCAGCTAACACTACAAAAGAGGTTTTTGGAACTGATGAAATCAAAT
AATGTTAACTAGGCTGCTGAATTGAAATAATTACATAATAACAATGGTTT
TTATTCAGGCATCAGCAACAAGACTGCATGCAGAGCTAAAGAATTATATG
CGGTGTATTACTGGTAAAATTTGTTTAATAAAATATACACCTTAACTTTT
AAAAATAAGATTTTTTATTAAATAGCCCCATAAACTAAGTTGATATCTTA
AATGAAGAAATTTTGTTGCAAATTTGATTTGACAGATGGCCGATTGTCTT
TTAAAAAGAGAATTCAATTTGTTTTTTTTGGATAATAATCTTTTAAAAAC
CTGTTTCAAAAATTTTTGCTGTATGTTTTGAAAAGATTATTTGTATTTGT
TTTTTTGAGCTTGCCCCCTTGCTTGAAAATGGCCAGAGAAACTTAATTTG
GTGGATTTTGGATTTTGGATAAATCATCAGATTTTCTTTCTGTCAAAATT
TCCCGGGGGGGGGGGGGACTAGGGCAAAATGGGTTAAGGGGATGCTCCGC
TGGTCAGGGTATCTTTTTCAACCTCCACGAGTCCCAGGTAGGGTCGCAAA
AACACCAAAATAGAAAAATCAGTCCCTCGTAGGGTGCCTATTTNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNCAGTCCCTCGTAGGGTGCCTATTTTTGGAAAATTTGGGGAAAAAGTA
GAAAATTTTGGAATTTCAGTCCCATTCAGGGTCACTTTTTTCGCAAATTT
CGAGTTCCACCACGTAGGGTCCATTTTTCGAACCTCAGCGGAGCACCCCC
GTCGGTCGACAAGGGTAGTACCCCCCCGGGCAAAATTTCTTCTTTCAACT
CAAGCTAGAAGTCTGATCCTAATTAGTTTGATTTGTTTTTCCAATGTCAA
TTTATCTGTACGTATGTTTCATTTATCTGAAACAATTGTTAAAAGTAGTG
CTTTTGAAAGCTTTTTGCAACCTTTTTTGATTCATTTTTTAGCTATGCAA
GTTGCTCATACAAATTTTGGGGAAGCTGTGAAGGAAGTATATGAGTCAGA
TTGGAGTTGTCGTCCAAAAATGGTTGATTATTTTAAGGTAACTTCACATT
AATTTAAAATCATTGATGTACAACTGACTGTAACAAAACTTCTGTGGTTC
ATTGGCAACATTTTACTGCATATTATAGTGTGCTATAGCCCAATATTTAC
ACTGGTTCACATTTACTGCCCATTTTACTATTCTAATTCTTTTTGGACCT
ACCCCGGTGGGGTGGAGGTCCTATAAATTAACCTCTGTCCGTCTGTCCGT
CCGTCCGTCCGTTCATTACCAACTTTTCTCGAGATTGGCTCATTAGTTTT
TTCTGATTTTTTGCACAAAGATGCATAAACTATAAACCCTCGAATGTGAC
GGAGCCCGATTAAAAAAAAAAAATTTGGGCAAATTTGGGCAAATTTGGGC
CAAAAAACGGCTAAAAAATGGGTTTTTTGGACTTTGTGAAAAATTGGATT
ATTAATTTTTTATGGATTTTGGCATGAAAGTAGGGTACCATCATCAAAAA
TTTTGTTGGCTCAAAAAACACATGTTTATCTATAAGAATCACTATTAATA
AGCATACATCAATGTTCTTAGTCAAATTACTGAATTTTTTTTATGATATA
GATATTTTTTTTTCATGAGGGCAAAATTTTGGTTGCTTGGCGTGTTTTTG
GTAGAAAAACTGGCCAAATTCGATATTTTTTTATAAGCACATTATCAATT
ACTTAGGTATTAGCTCTTTTCGAGATTGGCTCTTTCATTCTTTATGATTT
TTTGCACAAAGATGAATAACTATAAACCCTCGAATGTGACGGAGCTCGAT
TTTTGGGAGAAAAAAAATTTGGGTAAATTTCAGCTAAAAAACGGTTAAAA
AAAGGGTTTTTTGGATTTGTGAAATATTGGATAATTGTTTTTTTCTTATT
TTTTGCATGAAAGTAGGTAAAAGATGGCTCAAGCAGATTTTTCTGAAAAA
AATAACTTTTCAACTCAAAAAACACATCTTTATCTATAATAAGAATCACT
ATTAGTAAGCATACATCAATGTTCTTAGCCAAATTACTGAATTTTTTGAT
GAGATGGATGTTTTTTTTGCTCACAAAGTCTTGAATGTGAAAGAATTTTA
AAAGATCGTCACTATTTGTGTTCTGCATGATTATTTAATGGTCACGCTCA
TGTAGATATTAATTATATATGTGTTAAATGCATAACCAGGTAGGTCCACA
AAAGTATCACTTGTTTCTTGTAAAAGTATGTTAGGTTTCCAACCACTTTT
TTTTTCTCGATCAATTCAATATTAATAACAACAATCAAGATTACTTGAGG
ACTGCCCTTATAAATTTTCCAAAATAAAGATTCCCTAATAATAGCATATA
ACTACTTATAAAGTTAGCTCATCTCTTAATTTTAACAATTAAAAGCATGT
GCTTCCAACTCATCCTTTATTACCAATCTCTATATCAATAGGAATATGAC
AGCAACTGGACAAAACTAAGGCACCGTGTTTCTGAAGAAGTTCTTGAGCC
ACTTACGTCCTACCTCAAACCCTTTCCAGATGTCAAGGTAAGTTTGTCAA
ACTTATTTATTTTTTTGACTTGACTGTAATGTGATTTAAAGTGACATTGC
CCTAATTCAGTGTTATAATTTTTCTGTTTATAGACGAAATCCTTTCAGTT
GAGATACAAATACACTATCATCATTGCCATTCAAAAGAGGATTTTGGTTC
AAATGACCCATTCTAATCCTAAAGTTAACAATCGAGACTCACAAAACTTA
GTTACAACACTGCTAAAATAAGTTTCAAATTTGATCTAGGTTGAAATTCT
TCAAATACAAAAGCGCTGTTACTCTCCAAAAATATGTTCACAAAATAAAG
GCTCTAATTTTGTCTCTGATTTTATCATCATTTTAGACAAAAATCAGCAA
AAGAGCAAGAAAATTGGTAGACTATGATCATTCAAGGCATGCAGTTGACG
T Coding sequence (CDS) from alignment at scaffold_458:103464..107214- >TCONS_00066704 ID=TCONS_00066704|Name=TCONS_00066704|organism=Clytia hemisphaerica|type=CDS|length=3186bp|location=Sequence derived from alignment at scaffold_458:103464..107214- (Clytia hemisphaerica) ACAAAAATCAGCAAAAGAGCAAGAAAATTGGTAGACTATGATCATTCAAG GCATGCAGTTGACGAATATGACAGCAACTGGACAAAACTAAGGCACCGTG TTTCTGAAGAAGTTCTTGAGCCACTTACGTCCTACCTCAAACCCTTTCCA GATGTCAAGCTATGCAAGTTGCTCATACAAATTTTGGGGAAGCTGTGAAG GAAGTATATGAGTCAGATTGGAGTTGTCGTCCAAAAATGGTTGATTATTT TAAGGCATCAGCAACAAGACTGCATGCAGAGCTAAAGAATTATATGCGGT GTATTACTGCTGAAACAACGTGTTGGCAAAGGGGATGAAACAAAGGATGA AGTCTTCGATGAATTTGTATTCAACTTCAATAAGCAACAGGAAGAAAATA AAAATAACTTCAAGATTGCTACCTTACTGAAAAACGAGATGTCAGAAAAG AATGATGGGAAAAGTGAGAGAGGTTTACTGGCTAGAACAGCAACTTATAC TTCTAAAAAAGCTAGAAGAGCACAAACCAAGACAAAAATCAGCAAAAGAG CAAGAAAATTGGTAGACTATGATCATTCAAGGCATGCAGTTGACGAATAT GACAGCAACTGGACAAAACTAAGGCACCGTGTTTCTGAAGAAGTTCTTGA GCCACTTACGTCCTACCTCAAACCCTTTCCAGATGTCAAGCTATGCAAGT TGCTCATACAAATTTTGGGGAAGCTGTGAAGGAAGTATATGAGTCAGATT GGAGTTGTCGTCCAAAAATGGTTGATTATTTTAAGGCATCAGCAACAAGA CTGCATGCAGAGCTAAAGAATTATATGCGGTGTATTACTGCTGAAACAAC GTGTTGGCAAAGGGGATGAAACAAAGGATGAAGTCTTCGATGAATTTGTA TTCAACTTCAATAAGCAACAGGAAGAAAATAAAAATAACTTCAAGATTGC TACCTTACTGAAAAACGAGATGTCAGAAAAGAATGATGGGAAAAGTGAGA GAGGTTTACTGGCTAGAACAGCAACTTATACTTCTAAAAAAGCTAGAAGA GCACAAACCAAGACAAAAATCAGCAAAAGAGCAAGAAAATTGGTAGACTA TGATCATTCAAGGCATGCAGTTGACGAATATGACAGCAACTGGACAAAAC TAAGGCACCGTGTTTCTGAAGAAGTTCTTGAGCCACTTACGTCCTACCTC AAACCCTTTCCAGATGTCAAGCTATGCAAGTTGCTCATACAAATTTTGGG GAAGCTGTGAAGGAAGTATATGAGTCAGATTGGAGTTGTCGTCCAAAAAT GGTTGATTATTTTAAGGCATCAGCAACAAGACTGCATGCAGAGCTAAAGA ATTATATGCGGTGTATTACTGCTGAAACAACGTGTTGGCAAAGGGGATGA AACAAAGGATGAAGTCTTCGATGAATTTGTATTCAACTTCAATAAGCAAC AGGAAGAAAATAAAAATAACTTCAAGATTGCTACCTTACTGAAAAACGAG ATGTCAGAAAAGAATGATGGGAAAAGTGAGAGAGGTTTACTGGCTAGAAC AGCAACTTATACTTCTAAAAAAGCTAGAAGAGCACAAACCAAGACAAAAA TCAGCAAAAGAGCAAGAAAATTGGTAGACTATGATCATTCAAGGCATGCA GTTGACGAATATGACAGCAACTGGACAAAACTAAGGCACCGTGTTTCTGA AGAAGTTCTTGAGCCACTTACGTCCTACCTCAAACCCTTTCCAGATGTCA AGCTATGCAAGTTGCTCATACAAATTTTGGGGAAGCTGTGAAGGAAGTAT ATGAGTCAGATTGGAGTTGTCGTCCAAAAATGGTTGATTATTTTAAGGCA TCAGCAACAAGACTGCATGCAGAGCTAAAGAATTATATGCGGTGTATTAC TGCTGAAACAACGTGTTGGCAAAGGGGATGAAACAAAGGATGAAGTCTTC GATGAATTTGTATTCAACTTCAATAAGCAACAGGAAGAAAATAAAAATAA CTTCAAGATTGCTACCTTACTGAAAAACGAGATGTCAGAAAAGAATGATG GGAAAAGTGAGAGAGGTTTACTGGCTAGAACAGCAACTTATACTTCTAAA AAAGCTAGAAGAGCACAAACCAAGACAAAAATCAGCAAAAGAGCAAGAAA ATTGGTAGACTATGATCATTCAAGGCATGCAGTTGACGAATATGACAGCA ACTGGACAAAACTAAGGCACCGTGTTTCTGAAGAAGTTCTTGAGCCACTT ACGTCCTACCTCAAACCCTTTCCAGATGTCAAGCTATGCAAGTTGCTCAT ACAAATTTTGGGGAAGCTGTGAAGGAAGTATATGAGTCAGATTGGAGTTG TCGTCCAAAAATGGTTGATTATTTTAAGGCATCAGCAACAAGACTGCATG CAGAGCTAAAGAATTATATGCGGTGTATTACTGCTGAAACAACGTGTTGG CAAAGGGGATGAAACAAAGGATGAAGTCTTCGATGAATTTGTATTCAACT TCAATAAGCAACAGGAAGAAAATAAAAATAACTTCAAGATTGCTACCTTA CTGAAAAACGAGATGTCAGAAAAGAATGATGGGAAAAGTGAGAGAGGTTT ACTGGCTAGAACAGCAACTTATACTTCTAAAAAAGCTAGAAGAGCACAAA CCAAGACAAAAATCAGCAAAAGAGCAAGAAAATTGGTAGACTATGATCAT TCAAGGCATGCAGTTGACGAATATGACAGCAACTGGACAAAACTAAGGCA CCGTGTTTCTGAAGAAGTTCTTGAGCCACTTACGTCCTACCTCAAACCCT TTCCAGATGTCAAGCTATGCAAGTTGCTCATACAAATTTTGGGGAAGCTG TGAAGGAAGTATATGAGTCAGATTGGAGTTGTCGTCCAAAAATGGTTGAT TATTTTAAGGCATCAGCAACAAGACTGCATGCAGAGCTAAAGAATTATAT GCGGTGTATTACTGCTGAAACAACGTGTTGGCAAAGGGGATGAAACAAAG GATGAAGTCTTCGATGAATTTGTATTCAACTTCAATAAGCAACAGGAAGA AAATAAAAATAACTTCAAGATTGCTACCTTACTGAAAAACGAGATGTCAG AAAAGAATGATGGGAAAAGTGAGAGAGGTTTACTGGCTAGAACAGCAACT TATACTTCTAAAAAAGCTAGAAGAGCACAAACCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00066704-exon-scaffold_458-1575043694:107072..107214 | TCONS_00066704-exon-scaffold_458-1575043694:107072..107214 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1575043694:106600..106680 | TCONS_00066704-exon-scaffold_458-1575043694:106600..106680 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1575043694:106352..106406 | TCONS_00066704-exon-scaffold_458-1575043694:106352..106406 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1575043694:105378..105472 | TCONS_00066704-exon-scaffold_458-1575043694:105378..105472 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1575043694:103878..103973 | TCONS_00066704-exon-scaffold_458-1575043694:103878..103973 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1575043694:103464..103528 | TCONS_00066704-exon-scaffold_458-1575043694:103464..103528 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1510915933:107072..107214 | TCONS_00066704-exon-scaffold_458-1510915933:107072..107214 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1510915933:106600..106680 | TCONS_00066704-exon-scaffold_458-1510915933:106600..106680 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1510915933:106352..106406 | TCONS_00066704-exon-scaffold_458-1510915933:106352..106406 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1510915933:105378..105472 | TCONS_00066704-exon-scaffold_458-1510915933:105378..105472 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1510915933:103878..103973 | TCONS_00066704-exon-scaffold_458-1510915933:103878..103973 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1510915933:103464..103528 | TCONS_00066704-exon-scaffold_458-1510915933:103464..103528 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1491911889:107072..107214 | TCONS_00066704-exon-scaffold_458-1491911889:107072..107214 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1491911889:106600..106680 | TCONS_00066704-exon-scaffold_458-1491911889:106600..106680 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1491911889:106352..106406 | TCONS_00066704-exon-scaffold_458-1491911889:106352..106406 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1491911889:105378..105472 | TCONS_00066704-exon-scaffold_458-1491911889:105378..105472 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1491911889:103878..103973 | TCONS_00066704-exon-scaffold_458-1491911889:103878..103973 | Clytia hemisphaerica | exon |
TCONS_00066704-exon-scaffold_458-1491911889:103464..103528 | TCONS_00066704-exon-scaffold_458-1491911889:103464..103528 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_458 | supercontig | scaffold_458:103464..107214 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
Term | Definition |
GO:0005737 | cytoplasm |
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
cellular_component |
GO:0005737 |
cytoplasm |
molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00066704 vs. Swiss-Prot (Human)
Match: AMPH (Amphiphysin OS=Homo sapiens GN=AMPH PE=1 SV=1) HSP 1 Score: 123.635 bits (309), Expect = 1.768e-32 Identity = 63/147 (42.86%), Postives = 89/147 (60.54%), Query Frame = 3
Query: 84 GLLARTATYTSKKARRAQTKLKQRVGKGDETKDEVFDEFVFNFNKQQASATRLHAELKNYMRCITAMQVAHTNFGEAVKEVYESDWSCRPKMVDYFKEYDSNWTKLRHRVSEEVLEPLTSYLKPFPDVKTKISKRARKLVDYDHSRH 524
G+ A+ K+ RAQ K+ Q++GK DETKDE F+E+V NF +Q+A TRL EL+ Y+ I MQ A E++ EVYE DW R + ++ D W ++ + L L +YL FPD+K +I+KR+RKLVDYD +RH
Sbjct: 7 GIFAKN---VQKRLNRAQEKVLQKLGKADETKDEQFEEYVQNFKRQEAEGTRLQRELRGYLAAIKGMQEASMKLTESLHEVYEPDWYGREDVKMVGEKCDVLWEDFHQKLVDGSLLTLDTYLGQFPDIKNRIAKRSRKLVDYDSARH 150
The following BLAST results are available for this feature:
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