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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066693 ID=TCONS_00066693|Name=TCONS_00066693|organism=Clytia hemisphaerica|type=transcript|length=1305bpRun BLAST on NCBI transcript from alignment at scaffold_458:38287..50565- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066693 ID=TCONS_00066693|Name=TCONS_00066693|organism=Clytia hemisphaerica|type=transcript|length=12279bp|location=Sequence derived from alignment at scaffold_458:38287..50565- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066693 vs. Swiss-Prot (Human)
Match: DGKB (Diacylglycerol kinase beta OS=Homo sapiens GN=DGKB PE=2 SV=2) HSP 1 Score: 411.379 bits (1056), Expect = 4.941e-135 Identity = 244/469 (52.03%), Postives = 318/469 (67.80%), Query Frame = 2
Query: 2 TKRKVTEMDHHWVEGNCPGXXXXXXXXXX-XXXXXGLHCVWCSAQVHNRCVTNMPVMCSLGPHKVHILPPICITPA-----------------SXXXXXXXXXXXXNSVI-----------SYDGIPMQITPLPDTKPLIAFINPKSGGRQGARLLNKFRYLLNPRQVFNLAEGGPFPGLKFFAQVPDFRVLCCGGDGTAGWILATIDRLTSLKQRPPMAILPLGTGNDLARCLXXXXXXXXXXXXXXXXXXXXXXXXMMDRWQIDCDNFEKTSIEGDIMPQNIMNNYFSIGVDAAIALKFHLQREKNPEKFNSRFKNKLRYFQAGTSEQLAATCTKLSNFLEIICDGKKLEL--PSLEGIAILNIPSIYGGANIWGEPEXXXXXXX-----XXXXXXXDEPESLGSVSQDISDRKLEVVGLENSLYVGQIIAGVRQHGLRLAQCSTVVIKIMKTMPMQIDGEPWMQAP 1300
+KR M H+WVEGNCP KC KC+KT+K LTGLHCVWC +HN+C +++ C GP K HILPP I P S K EK + N VI + DG +Q+TP+P T PL+ F+NPKSGG+QG R+ KF+YLLNPRQV++L+ GP PGL FF VPDFRVL CGGDGT GW+L I++ ++ + PP+AILPLGTGNDLARCL WGGGYEG +L K+L+ + S+ +M+DRW+ + +K +GD +P +I+NNYFSIGVDA+IA +FH+ REK+PEKFNSR KNK YF+ GTSE +ATC KL +EI CDG +++L SLEGIAILNIPS++GG+N+WGE +K+R R+ ++ + + L SQD+SD+ LEVVGLE ++ +GQI G++ G RLAQCS VVI+ K++PMQIDGEPWMQ P
Sbjct: 301 SKRNTDVMHHYWVEGNCPTKCDKCHKTVKCYQGLTGLHCVWCQITLHNKCASHLKPECDCGPLKDHILPPTTICPVVLQTLPTSGVSVPEERQSTVKKEKSGSQQPNKVIDKNKMQRANSVTVDGQGLQVTPVPGTHPLLVFVNPKSGGKQGERIYRKFQYLLNPRQVYSLSGNGPMPGLNFFRDVPDFRVLACGGDGTVGWVLDCIEK-ANVGKHPPVAILPLGTGNDLARCLRWGGGYEGENLMKILKDIENSTEIMLDRWKFEVIPNDKDE-KGDPVPYSIINNYFSIGVDASIAHRFHIMREKHPEKFNSRMKNKFWYFEFGTSETFSATCKKLHESVEIECDGVQIDLINISLEGIAILNIPSMHGGSNLWGESKKRRSHRRIEKKGSDKRTTVTDAKELKFASQDLSDQLLEVVGLEGAMEMGQIYTGLKSAGRRLAQCSCVVIRTSKSLPMQIDGEPWMQTP 767 The following BLAST results are available for this feature:
BLAST of TCONS_00066693 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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