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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066661 ID=TCONS_00066661|Name=TCONS_00066661|organism=Clytia hemisphaerica|type=transcript|length=2227bp
GGACGTTCAAGTTCTCGAGGTTCAGCTCATCTATCCATGAATCGATGGAT
CTCTCCCCTTCTTGGGTGACTGATTGTCGAACTGATCCGATATTATCATT
CGTCTGACAACGCTCGTCTCGATGTCTTTCGTTGGTTTGGTTGACCCGAG
ATCGATTGTACTTATTGATTGTGGCTGGGAAAGGAGTAGCATCTGGGTTG
AGTCTATCCTTGGGAGGGTACTTATCAATAATATATGTACTTTGTAGGCA
ACGATTAGGAAGGGGGTCCCTCCATTCCTGAGGGCTCCTTTTGAACTTTA
CTTCTCTTGATGTTGACTCAAGGTGATGGGTTTGCCCCCTCGTCCCATCA
TATGTTTGATATCTTGTTCCTTCGGACACGTCTGCTGCTTCGGACACGGT
TAGTCTTTTGGACGTATCGTCCGGGATTCTTACTTCGTGTTCTCCGGATA
CATGAGGTTTAGTTTCGGTATTTTGGAGTCGTGTTAGGTTCGCTTCAAGt
aaaattcccttttcaggTTCCGGTGACCGGTTTTCGGGGTCATTCCTTCT
GGGTGAGTTGCTTCGGTATTCATTCATGGCCTGCGTATCCCGGACTTCCG
CATTCTCAGGATCTCTGTTTCCTGTTGTCTGGGTCATAGTGTTGTTGGAG
TGGGCCGGCTCAATATATAACTTCGAGAATGCTTCAATGACGCTATTGTT
GTCTGCTTCAGATCCTTCGAGCTTTTCTGCTTCAGATCCTTCGAGCTTTT
CTGCATCCTCGAAAAATTGGATACTTTGTCTCCAGGATTCGATTCTCGCC
TTTTGAGTTTCAGCAGAACATAGTGATGAAGGAGTATCATTTTCTCTGTC
GACGAAGTATTGCTCAATGTTCGCCAAACAGTCGTTCACCCTTATGGATA
GGTCATCTATCCATCGGTCATTGAATTCCGGATGTCCGTCGGTCAAGAGT
AGCATGAAGTCCTCATGTCTTTCTATAGCGGCCAGTTTCTCTTGCTGCAA
GGTATCTTTCAGAAATCGCAGCTTCGTTCGACTTCCCCGCGACGCGACAT
GGGTTTCTATTTCTTGAATCATTTTCCCGATAGAATATTTTTTCCCGTTT
CTCTTGCGCTTCGCTTGGGAGATTTGACGCTCGATACTAGAGGCCATAAT
AGTGGATATGGGGATATTCTTGACGATATTCTAATGTCTCGGTAACGATT
CGGATTGGTTCAGTATGATTTGTATGGGCTCTGTGCGATCCTTGCGTATG
TTGGATAGGTGAACGTTGTATCAAGTTATGGTGTGATCTGCgatcaggtt
gattttttagtATGTCGATGTTTGTTAAGGCCCCTGGGCGGTGATGCGCG
CGCGGGGGTGTAAGCTGGTGGCGGGTGACGATAGTTGCAGTGTTTGCAGA
ATAGGCGGAGCGGTTGGGAATGAGGACGGTGTTTGTAGAGGGCGGGAGGG
TGGTTTAAGACAGTTATTCAAACTGATCAGAGGTAAACCAGGCCCAATAG
TGGTCGGATAGCTCCGTCCGGCTCAGGTCAAACGGTTCAAACGGTCAGAC
GTTAGGACGTTATTCAAACTGGTCAGAAGCAGAAACCAGGCCAAATGGCG
ATCGGATAACTCCGCCCGGTTCAGGTCAAACGGTTCAAACGGTCAGACGT
TAGGACGTTATTCAAACTGGTCAGAAGCAGAAACCAGGCCAAATGGCGAT
CGGATAACTCCGCCCGGTTCAGGTCAAACGGTTCAAACGGTCAGACGTTA
GGACTTTATTCAAACTGGTCAGAAGCAGAAACCAGGTCAAATGGCGATCG
GATAACTCCGTGCTGGTCAGGTCAGGCAGTTCAAACGGTCAGGCGTTAGG
ACGTTACTCAAACTGGTCAGAAGCGGAAACCAGGCCAGATAGCGGTCGGA
TGATAGCTCCGTCCGGATCAGGTCAAACGGTTCAAATGGCCAGACGTTAA
TAAGAGCCAGACAGGACAGAGACGGAAACAGTTTATCAACAGACAGGTCA
AACAGAAACCAGGTCCCAGTATTCAATGAGCCACACCAGAATTTCCCGTG
CCACAAGAACAATTCTGTGTTGCCCTTCTTGATGTCCTCTCTTGAGTTCT
TGACAGGAAAACGCCACAACTATAAAAGTAACCACAACcataaattaaaa
aacaaacaatttcttcttcttcaatttcttcttctttaaaatgCTTCTGA
TGAGTTATTGTTAAGTGGACTTCGTCC Run BLAST on NCBI protein sequence of TCONS_00066661-protein >TCONS_00066661-protein ID=TCONS_00066661-protein|Name=TCONS_00066661-protein|organism=Clytia hemisphaerica|type=polypeptide|length=382bp
MASSIERQISQAKRKRNGKKYSIGKMIQEIETHVASRGSRTKLRFLKDTL
QQEKLAAIERHEDFMLLLTDGHPEFNDRWIDDLSIRVNDCLANIEQYFVD
RENDTPSSLCSAETQKARIESWRQSIQFFEDAEKLEGSEAEKLEGSEADN
NSVIEAFSKLYIEPAHSNNTMTQTTGNRDPENAEVRDTQAMNEYRSNSPR
RNDPENRSPEPEKGILLEANLTRLQNTETKPHVSGEHEVRIPDDTSKRLT
VSEAADVSEGTRYQTYDGTRGQTHHLESTSREVKFKRSPQEWRDPLPNRC
LQSTYIIDKYPPKDRLNPDATPFPATINKYNRSRVNQTNERHRDERCQTN
DNIGSVRQSVTQEGERSIDSWIDELNLENLNV Run BLAST on NCBI transcript from alignment at scaffold_457:61217..63443 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066661 ID=TCONS_00066661|Name=TCONS_00066661|organism=Clytia hemisphaerica|type=transcript|length=2227bp|location=Sequence derived from alignment at scaffold_457:61217..63443 (Clytia hemisphaerica)
GGACGAAGTCCACTTAACAATAACTCATCAGAAGcattttaaagaagaag
aaattgaagaagaagaaattgtttgttttttaatttatgGTTGTGGTTAC
TTTTATAGTTGTGGCGTTTTCCTGTCAAGAACTCAAGAGAGGACATCAAG
AAGGGCAACACAGAATTGTTCTTGTGGCACGGGAAATTCTGGTGTGGCTC
ATTGAATACTGGGACCTGGTTTCTGTTTGACCTGTCTGTTGATAAACTGT
TTCCGTCTCTGTCCTGTCTGGCTCTTATTAACGTCTGGCCATTTGAACCG
TTTGACCTGATCCGGACGGAGCTATCATCCGACCGCTATCTGGCCTGGTT
TCCGCTTCTGACCAGTTTGAGTAACGTCCTAACGCCTGACCGTTTGAACT
GCCTGACCTGACCAGCACGGAGTTATCCGATCGCCATTTGACCTGGTTTC
TGCTTCTGACCAGTTTGAATAAAGTCCTAACGTCTGACCGTTTGAACCGT
TTGACCTGAACCGGGCGGAGTTATCCGATCGCCATTTGGCCTGGTTTCTG
CTTCTGACCAGTTTGAATAACGTCCTAACGTCTGACCGTTTGAACCGTTT
GACCTGAACCGGGCGGAGTTATCCGATCGCCATTTGGCCTGGTTTCTGCT
TCTGACCAGTTTGAATAACGTCCTAACGTCTGACCGTTTGAACCGTTTGA
CCTGAGCCGGACGGAGCTATCCGACCACTATTGGGCCTGGTTTACCTCTG
ATCAGTTTGAATAACTGTCTTAAACCACCCTCCCGCCCTCTACAAACACC
GTCCTCATTCCCAACCGCTCCGCCTATTCTGCAAACACTGCAACTATCGT
CACCCGCCACCAGCTTACACCCCCGCGCGCGCATCACCGCCCAGGGGCCT
TAACAAACATCGACATactaaaaaatcaacctgatcGCAGATCACACCAT
AACTTGATACAACGTTCACCTATCCAACATACGCAAGGATCGCACAGAGC
CCATACAAATCATACTGAACCAATCCGAATCGTTACCGAGACATTAGAAT
ATCGTCAAGAATATCCCCATATCCACTATTATGGCCTCTAGTATCGAGCG
TCAAATCTCCCAAGCGAAGCGCAAGAGAAACGGGAAAAAATATTCTATCG
GGAAAATGATTCAAGAAATAGAAACCCATGTCGCGTCGCGGGGAAGTCGA
ACGAAGCTGCGATTTCTGAAAGATACCTTGCAGCAAGAGAAACTGGCCGC
TATAGAAAGACATGAGGACTTCATGCTACTCTTGACCGACGGACATCCGG
AATTCAATGACCGATGGATAGATGACCTATCCATAAGGGTGAACGACTGT
TTGGCGAACATTGAGCAATACTTCGTCGACAGAGAAAATGATACTCCTTC
ATCACTATGTTCTGCTGAAACTCAAAAGGCGAGAATCGAATCCTGGAGAC
AAAGTATCCAATTTTTCGAGGATGCAGAAAAGCTCGAAGGATCTGAAGCA
GAAAAGCTCGAAGGATCTGAAGCAGACAACAATAGCGTCATTGAAGCATT
CTCGAAGTTATATATTGAGCCGGCCCACTCCAACAACACTATGACCCAGA
CAACAGGAAACAGAGATCCTGAGAATGCGGAAGTCCGGGATACGCAGGCC
ATGAATGAATACCGAAGCAACTCACCCAGAAGGAATGACCCCGAAAACCG
GTCACCGGAAcctgaaaagggaattttaCTTGAAGCGAACCTAACACGAC
TCCAAAATACCGAAACTAAACCTCATGTATCCGGAGAACACGAAGTAAGA
ATCCCGGACGATACGTCCAAAAGACTAACCGTGTCCGAAGCAGCAGACGT
GTCCGAAGGAACAAGATATCAAACATATGATGGGACGAGGGGGCAAACCC
ATCACCTTGAGTCAACATCAAGAGAAGTAAAGTTCAAAAGGAGCCCTCAG
GAATGGAGGGACCCCCTTCCTAATCGTTGCCTACAAAGTACATATATTAT
TGATAAGTACCCTCCCAAGGATAGACTCAACCCAGATGCTACTCCTTTCC
CAGCCACAATCAATAAGTACAATCGATCTCGGGTCAACCAAACCAACGAA
AGACATCGAGACGAGCGTTGTCAGACGAATGATAATATCGGATCAGTTCG
ACAATCAGTCACCCAAGAAGGGGAGAGATCCATCGATTCATGGATAGATG
AGCTGAACCTCGAGAACTTGAACGTCC Coding sequence (CDS) from alignment at scaffold_457:61217..63443 >TCONS_00066661 ID=TCONS_00066661|Name=TCONS_00066661|organism=Clytia hemisphaerica|type=CDS|length=1146bp|location=Sequence derived from alignment at scaffold_457:61217..63443 (Clytia hemisphaerica)
ATGGCCTCTAGTATCGAGCGTCAAATCTCCCAAGCGAAGCGCAAGAGAAA
CGGGAAAAAATATTCTATCGGGAAAATGATTCAAGAAATAGAAACCCATG
TCGCGTCGCGGGGAAGTCGAACGAAGCTGCGATTTCTGAAAGATACCTTG
CAGCAAGAGAAACTGGCCGCTATAGAAAGACATGAGGACTTCATGCTACT
CTTGACCGACGGACATCCGGAATTCAATGACCGATGGATAGATGACCTAT
CCATAAGGGTGAACGACTGTTTGGCGAACATTGAGCAATACTTCGTCGAC
AGAGAAAATGATACTCCTTCATCACTATGTTCTGCTGAAACTCAAAAGGC
GAGAATCGAATCCTGGAGACAAAGTATCCAATTTTTCGAGGATGCAGAAA
AGCTCGAAGGATCTGAAGCAGAAAAGCTCGAAGGATCTGAAGCAGACAAC
AATAGCGTCATTGAAGCATTCTCGAAGTTATATATTGAGCCGGCCCACTC
CAACAACACTATGACCCAGACAACAGGAAACAGAGATCCTGAGAATGCGG
AAGTCCGGGATACGCAGGCCATGAATGAATACCGAAGCAACTCACCCAGA
AGGAATGACCCCGAAAACCGGTCACCGGAAcctgaaaagggaattttaCT
TGAAGCGAACCTAACACGACTCCAAAATACCGAAACTAAACCTCATGTAT
CCGGAGAACACGAAGTAAGAATCCCGGACGATACGTCCAAAAGACTAACC
GTGTCCGAAGCAGCAGACGTGTCCGAAGGAACAAGATATCAAACATATGA
TGGGACGAGGGGGCAAACCCATCACCTTGAGTCAACATCAAGAGAAGTAA
AGTTCAAAAGGAGCCCTCAGGAATGGAGGGACCCCCTTCCTAATCGTTGC
CTACAAAGTACATATATTATTGATAAGTACCCTCCCAAGGATAGACTCAA
CCCAGATGCTACTCCTTTCCCAGCCACAATCAATAAGTACAATCGATCTC
GGGTCAACCAAACCAACGAAAGACATCGAGACGAGCGTTGTCAGACGAAT
GATAATATCGGATCAGTTCGACAATCAGTCACCCAAGAAGGGGAGAGATC
CATCGATTCATGGATAGATGAGCTGAACCTCGAGAACTTGAACGTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066661-exon-scaffold_457-1491911889:61217..63443 | TCONS_00066661-exon-scaffold_457-1491911889:61217..63443 | Clytia hemisphaerica | exon |
| TCONS_00066661-exon-scaffold_457-1510915933:61217..63443 | TCONS_00066661-exon-scaffold_457-1510915933:61217..63443 | Clytia hemisphaerica | exon |
| TCONS_00066661-exon-scaffold_457-1575043694:61217..63443 | TCONS_00066661-exon-scaffold_457-1575043694:61217..63443 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_457 | supercontig | scaffold_457:61217..63443 . |
Blast
The following BLAST results are available for this feature:
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