TCONS_00066660 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066660
Unique NameTCONS_00066660
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length550

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066660 ID=TCONS_00066660|Name=TCONS_00066660|organism=Clytia hemisphaerica|type=transcript|length=550bp
AAATGGCTTACCTTCACGAGGTGTACCCTGTTACACATATTCGAAGCCTA
CGTAAATAGACATCGACTATGTCAACTGAAAGCCATTACCCTACAGTGTG
CCAACGAAATATCGAAATTAGGCTTTGTCTTGAAAGCTTCTTTTAAATTA
ACTTTGTACAAGTCTTATCACATTCCCAAACACATATCATATTTCTGTGG
CACACTGTACCAACATTTTGGAAACTGATTTAAACTACTAAatgtatctt
tttctttttttacagacGTAAAATTTAAAATGGCAATCAGTGAGAATGAT
ATAGAGATGGAGGCCCAACAAAATTTAAAGGTCGAACAAGACTTGGGGGT
CACCATctctaaattaaaattaaaactagCAAAGGTGGAACGATTGTtgg
agaaagaaagaaaagtcgTAAGTCGTAACGAAAGAGCAGGAgatagaaaa
tttaaaagaagaaaacgataagttgaaagaagaaaatgataaGTTGAAGA
AAGAATTGAAGGGGAAAGATGAGAAACGTTTAAGAAAGTCGAGCAGGAAG
Run BLAST on NCBI

protein sequence of TCONS_00066660-protein

>TCONS_00066660-protein ID=TCONS_00066660-protein|Name=TCONS_00066660-protein|organism=Clytia hemisphaerica|type=polypeptide|length=126bp
SCSTFLNVSHLSPSILSSTYHFLLSTYRFLLLNFLSPALSLRLTTFLSFS
NNRSTFASFNFNLEMVTPKSCSTFKFCWASISISFSLIAILNFTSVKKEK
DTFSSLNQFPKCWYSVPQKYDMCLGM
Run BLAST on NCBI

transcript from alignment at scaffold_457:50360..50909

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066660 ID=TCONS_00066660|Name=TCONS_00066660|organism=Clytia hemisphaerica|type=transcript|length=550bp|location=Sequence derived from alignment at scaffold_457:50360..50909 (Clytia hemisphaerica)
CTTCCTGCTCGACTTTCTTAAACGTTTCTCATCTTTCCCCTTCAATTCTT
TCTTCAACttatcattttcttctttcaacttatcgttttcttcttttaaa
ttttctatcTCCTGCTCTTTCGTTACGACTTAcgacttttctttctttct
ccaACAATCGTTCCACCTTTGctagttttaattttaatttagagATGGTG
ACCCCCAAGTCTTGTTCGACCTTTAAATTTTGTTGGGCCTCCATCTCTAT
ATCATTCTCACTGATTGCCATTTTAAATTTTACgtctgtaaaaaaagaaa
aagatacatTTAGTAGTTTAAATCAGTTTCCAAAATGTTGGTACAGTGTG
CCACAGAAATATGATATGTGTTTGGGAATGTGATAAGACTTGTACAAAGT
TAATTTAAAAGAAGCTTTCAAGACAAAGCCTAATTTCGATATTTCGTTGG
CACACTGTAGGGTAATGGCTTTCAGTTGACATAGTCGATGTCTATTTACG
TAGGCTTCGAATATGTGTAACAGGGTACACCTCGTGAAGGTAAGCCATTT

Coding sequence (CDS) from alignment at scaffold_457:50360..50909

>TCONS_00066660 ID=TCONS_00066660|Name=TCONS_00066660|organism=Clytia hemisphaerica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_457:50360..50909 (Clytia hemisphaerica)
TCCTGCTCGACTTTCTTAAACGTTTCTCATCTTTCCCCTTCAATTCTTTC
TTCAACttatcattttcttctttcaacttatcgttttcttcttttaaatt
ttctatcTCCTGCTCTTTCGTTACGACTTAcgacttttctttctttctcc
aACAATCGTTCCACCTTTGctagttttaattttaatttagagATGGTGAC
CCCCAAGTCTTGTTCGACCTTTAAATTTTGTTGGGCCTCCATCTCTATAT
CATTCTCACTGATTGCCATTTTAAATTTTACgtctgtaaaaaaagaaaaa
gatacatTTAGTAGTTTAAATCAGTTTCCAAAATGTTGGTACAGTGTGCC
ACAGAAATATGATATGTGTTTGGGAATGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041695XLOC_041695Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066660-proteinTCONS_00066660-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066660-exon-scaffold_457-1491911889:50360..50909TCONS_00066660-exon-scaffold_457-1491911889:50360..50909Clytia hemisphaericaexon
TCONS_00066660-exon-scaffold_457-1510915933:50360..50909TCONS_00066660-exon-scaffold_457-1510915933:50360..50909Clytia hemisphaericaexon
TCONS_00066660-exon-scaffold_457-1575043694:50360..50909TCONS_00066660-exon-scaffold_457-1575043694:50360..50909Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_457supercontigscaffold_457:50360..50909 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.101456	0	0.230497	0.140304	0.22174	0	0	0	0	0	0	0	0	0	0	0.0781027	0	0	0	0	0	0	0	8.93628	5.58279	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066660 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top