TCONS_00066642 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066642
Unique NameTCONS_00066642
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1160

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066642 ID=TCONS_00066642|Name=TCONS_00066642|organism=Clytia hemisphaerica|type=transcript|length=1160bp
TGAAAATTCAACAGTAGCAGAATCAAGATTTTATTCGTCAAAGAGTTGGT
GTAAAAACTCTATAACCGAAATTCAAGTTCAAGCTTTTTGTCTTCAACAT
CAACATCGTGATGAATAAAACACACTGCACTTCCACGTTTGGGACATTGG
CGATGCTCGGTGAGAATCAGCGAATCGGATACATGGTTGCCAACATCCTT
ATCGCCCTCGTTAACCTGGTCACCAATCTATGCGTCATTATTATCatcat
aaaaacaaaacaaattaaaaaccaaTCAATAAAATTAGTTTATTATTTAT
CAATCTCAAATGTACTGTTTGCTGTAATTGGTCAACCtatttttgccgcc
attttGTATCTTGGAACTGAGGTTGGATGCACAGAAATGAGGCTGTTGTT
ACTGGTTATCGAATTCTTTATGTATAGCTCGACCTATTTGACTGGGATGC
TAGGGTTTGACCGCTATATACGCATACGCTATCAAAGCACTTATAACAAA
GTCTATTCGCGTCTTCGGTTCAACCTTAGCCTGGTTATACTTTACATACT
GATCGTTCTACAGGCTGGATTAGGCACAATGTCACGTTTTTTAAACCTGT
CAGCAGTCCTGATTAATTTACCAGTTAACGTAATAATGTTTTTGATCGTC
GCTTGCCTGTATGGGAAATCGATCCTGATTCTGCGAGAGTATGAACAAAC
CGCTAAAAGACTTTTTAAACACAAGAAGAAGGTACCATTGACTCGACTCG
CTTCACTATACATAGCTACAGACACTATCCTATGTCTACCTTTGGTCATA
ATCTTGAGTGCTTACTATTTTATACAGAAGAGCTCAATCGATTATGAACT
AAAAGCTATCATCTTCTAcacatgttttttgtttttcttatgtCATTGTC
CTATCAATGctgtgtgttttttgtttgttaacaAGAAAGCCAAATCAAGA
TTGGTCGGGAAAAAACGGAAATCAACGGACGCACTGAATAATAGTTCAAG
TTACAATAACCAAAATGACACAATAATCAGCAAGAGTCAATCAAGCCCTG
TACTTGACACACggatgtagtttttttaacacattttttctttagttctt
tCATTGTCAAACTATACGTAGTCAAAGAAATTGTTTCGTACAATATGGTG
TCGTATTGAT
Run BLAST on NCBI

protein sequence of TCONS_00066642-protein

>TCONS_00066642-protein ID=TCONS_00066642-protein|Name=TCONS_00066642-protein|organism=Clytia hemisphaerica|type=polypeptide|length=319bp
MNKTHCTSTFGTLAMLGENQRIGYMVANILIALVNLVTNLCVIIIIIKTK
QIKNQSIKLVYYLSISNVLFAVIGQPIFAAILYLGTEVGCTEMRLLLLVI
EFFMYSSTYLTGMLGFDRYIRIRYQSTYNKVYSRLRFNLSLVILYILIVL
QAGLGTMSRFLNLSAVLINLPVNVIMFLIVACLYGKSILILREYEQTAKR
LFKHKKKVPLTRLASLYIATDTILCLPLVIILSAYYFIQKSSIDYELKAI
IFYTCFLFFLCHCPINAVCFLFVNKKAKSRLVGKKRKSTDALNNSSSYNN
QNDTIISKSQSSPVLDTRM
Run BLAST on NCBI

transcript from alignment at scaffold_457:238698..239934+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066642 ID=TCONS_00066642|Name=TCONS_00066642|organism=Clytia hemisphaerica|type=transcript|length=1237bp|location=Sequence derived from alignment at scaffold_457:238698..239934+ (Clytia hemisphaerica)
TGAAAATTCAACAGTAGCAGAATCAAGATTTTATTCGTCAAAGAGTTGGT
GTAAAAACTCTATAACCGAAATTCAAGTTCAAGCTTTTTGTCTTCAACAT
CAACATCGTGATGAATAAAACACACTGCACTTCCACGTTTGGGACATTGG
CGATGCTCGGTGAGAATCAGCGAATCGGATACATGGTTGCCAACATCCTT
ATCGCCCTCGTTAACCTGGTCACCAATCTATGCGTCATTATTATCatcat
aaaaacaaaacaaattaaaaaccaaTCAATAAAATTAGTTTATTATTTAT
CAATCTCAAATGTACTGTTTGCTGTAATTGGTCAACCtatttttgccgcc
attttGTATCTTGGAACTGAGGTTGGATGCACAGAAATGAGGCTGTTGTT
ACTGGTTATNAACCTATTTTTGCCGCTATTTTGTATCTTGGAACTGAGGT
TGGATGCACAGAAATGAGGCTGTTGTTACTGGTTATCGAATTCTTTATGT
ATAGCTCGACCTATTTGACTGGGATGCTAGGGTTTGACCGCTATATACGC
ATACGCTATCAAAGCACTTATAACAAAGTCTATTCGCGTCTTCGGTTCAA
CCTTAGCCTGGTTATACTTTACATACTGATCGTTCTACAGGCTGGATTAG
GCACAATGTCACGTTTTTTAAACCTGTCAGCAGTCCTGATTAATTTACCA
GTTAACGTAATAATGTTTTTGATCGTCGCTTGCCTGTATGGGAAATCGAT
CCTGATTCTGCGAGAGTATGAACAAACCGCTAAAAGACTTTTTAAACACA
AGAAGAAGGTACCATTGACTCGACTCGCTTCACTATACATAGCTACAGAC
ACTATCCTATGTCTACCTTTGGTCATAATCTTGAGTGCTTACTATTTTAT
ACAGAAGAGCTCAATCGATTATGAACTAAAAGCTATCATCTTCTAcacat
gttttttgtttttcttatgtCATTGTCCTATCAATGctgtgtgttttttg
tttgttaacaAGAAAGCCAAATCAAGATTGGTCGGGAAAAAACGGAAATC
AACGGACGCACTGAATAATAGTTCAAGTTACAATAACCAAAATGACACAA
TAATCAGCAAGAGTCAATCAAGCCCTGTACTTGACACACggatgtagttt
ttttaacacattttttctttagttctttCATTGTCAAACTATACGTAGTC
AAAGAAATTGTTTCGTACAATATGGTGTCGTATTGAT

Coding sequence (CDS) from alignment at scaffold_457:238698..239934+

>TCONS_00066642 ID=TCONS_00066642|Name=TCONS_00066642|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_457:238698..239934+ (Clytia hemisphaerica)
ATGAATAAAACACACTGCACTTCCACGTTTGGGACATTGGCGATGCTCGG
TGAGAATCAGCGAATCGGATACATGGTTGCCAACATCCTTATCGCCCTCG
TTAACCTGGTCACCAATCTATGCGTCATTATTATCatcataaaaacaaaa
caaattaaaaaccaaTCAATAAAATTAGTTTATTATTTATCAATCTCAAA
TGTACTGTTTGCTGTAATTGGTCAACCtatttttgccgccattttGTATC
TTGGAACTGAGGTTGGATGCACAGAAATGAGGCTGTTGTTACTGGTTATC
GAATTCTTTATGTATAGCTCGACCTATTTGACTGGGATGCTAGGGTTTGA
CCGCTATATACGCATACGCTATCAAAGCACTTATAACAAAGTCTATTCGC
GTCTTCGGTTCAACCTTAGCCTGGTTATACTTTACATACTGATCGTTCTA
CAGGCTGGATTAGGCACAATGTCACGTTTTTTAAACCTGTCAGCAGTCCT
GATTAATTTACCAGTTAACGTAATAATGTTTTTGATCGTCGCTTGCCTGT
ATGGGAAATCGATCCTGATTCTGCGAGAGTATGAACAAACCGCTAAAAGA
CTTTTTAAACACAAGAAGAAGGTACCATTGACTCGACTCGCTTCACTATA
CATAGCTACAGACACTATCCTATGTCTACCTTTGGTCATAATCTTGAGTG
CTTACTATTTTATACAGAAGAGCTCAATCGATTATGAACTAAAAGCTATC
ATCTTCTAcacatgttttttgtttttcttatgtCATTGTCCTATCAATGc
tgtgtgttttttgtttgttaacaAGAAAGCCAAATCAAGATTGGTCGGGA
AAAAACGGAAATCAACGGACGCACTGAATAATAGTTCAAGTTACAATAAC
CAAAATGACACAATAATCAGCAAGAGTCAATCAAGCCCTGTACTTGACAC
ACggatgtagATGAATAAAACACACTGCACTTCCACGTTTGGGACATTGG
CGATGCTCGGTGAGAATCAGCGAATCGGATACATGGTTGCCAACATCCTT
ATCGCCCTCGTTAACCTGGTCACCAATCTATGCGTCATTATTATCatcat
aaaaacaaaacaaattaaaaaccaaTCAATAAAATTAGTTTATTATTTAT
CAATCTCAAATGTACTGTTTGCTGTAATTGGTCAACCtatttttgccgcc
attttGTATCTTGGAACTGAGGTTGGATGCACAGAAATGAGGCTGTTGTT
ACTGGTTATCGAATTCTTTATGTATAGCTCGACCTATTTGACTGGGATGC
TAGGGTTTGACCGCTATATACGCATACGCTATCAAAGCACTTATAACAAA
GTCTATTCGCGTCTTCGGTTCAACCTTAGCCTGGTTATACTTTACATACT
GATCGTTCTACAGGCTGGATTAGGCACAATGTCACGTTTTTTAAACCTGT
CAGCAGTCCTGATTAATTTACCAGTTAACGTAATAATGTTTTTGATCGTC
GCTTGCCTGTATGGGAAATCGATCCTGATTCTGCGAGAGTATGAACAAAC
CGCTAAAAGACTTTTTAAACACAAGAAGAAGGTACCATTGACTCGACTCG
CTTCACTATACATAGCTACAGACACTATCCTATGTCTACCTTTGGTCATA
ATCTTGAGTGCTTACTATTTTATACAGAAGAGCTCAATCGATTATGAACT
AAAAGCTATCATCTTCTAcacatgttttttgtttttcttatgtCATTGTC
CTATCAATGctgtgtgttttttgtttgttaacaAGAAAGCCAAATCAAGA
TTGGTCGGGAAAAAACGGAAATCAACGGACGCACTGAATAATAGTTCAAG
TTACAATAACCAAAATGACACAATAATCAGCAAGAGTCAATCAAGCCCTG
TACTTGACACACggatgtag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041681XLOC_041681Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066642-proteinTCONS_00066642-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066642-exon-scaffold_457-1491911889:238698..239068TCONS_00066642-exon-scaffold_457-1491911889:238698..239068Clytia hemisphaericaexon
TCONS_00066642-exon-scaffold_457-1510915933:238698..239068TCONS_00066642-exon-scaffold_457-1510915933:238698..239068Clytia hemisphaericaexon
TCONS_00066642-exon-scaffold_457-1575043694:238698..239068TCONS_00066642-exon-scaffold_457-1575043694:238698..239068Clytia hemisphaericaexon
TCONS_00066642-exon-scaffold_457-1491911889:239146..239934TCONS_00066642-exon-scaffold_457-1491911889:239146..239934Clytia hemisphaericaexon
TCONS_00066642-exon-scaffold_457-1510915933:239146..239934TCONS_00066642-exon-scaffold_457-1510915933:239146..239934Clytia hemisphaericaexon
TCONS_00066642-exon-scaffold_457-1575043694:239146..239934TCONS_00066642-exon-scaffold_457-1575043694:239146..239934Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_457supercontigscaffold_457:238698..239934 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.63842	1.84581	0.775906	0.721502	3.20152	4.3794	4.76978	5.02811	2.93295	5.75707	3.84901	2.83259	4.50015	2.46938	1.45612	2.20531	3.29502	3.48151	6.39259	9.18674	2.02083	3.1197	5.45655	4.98917	3.24213	2.67936	24.7793	20.9978	1.17094	0.702338
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066642 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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