TCONS_00066635 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066635
Unique NameTCONS_00066635
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066635 ID=TCONS_00066635|Name=TCONS_00066635|organism=Clytia hemisphaerica|type=transcript|length=694bp
acagactaaaaactaaaaaaattcatCACAGAAAATAATGATCTAATTAC
ATATTAACGAAATGAAACCCATTGCTCTGTTCTTGGTTTTCTTGACTTGC
CATGATGTTTTATCATCTGTCAGTGATCAAACGTCAGAAGTTGGATTAGC
AGATATAGAAGGAGTTATTGCTGGGTATGGTGATTTCAATTCCGACCAAG
CAACAGATGTTTTTGTCATTTCAAAGGATTGGGCAACAGTTCATGTTTAT
CTTTGGAATGTGAGGAACCAAAAGTTTACAAAAGGAGATGCGACAGTAAA
GAGTGAGAATATAGTCAACATCGTTCCAGCAGACTTTAATGGTGATGGTG
ATATGGATTTATTGATCTCCACTGAATCATCAAAGAAAACAGTCATCTCT
CAAGTTTATTTTGGGAACCGCAAATCATTGACTAAATCTGATGACCTGAA
GATTGAGGCCAAAGATCAACCAACAGTCTTTGATATGAATGGTGACTACT
TACCAGACCTCTTTGGTACAGATTTGAATGGTAATCGAACTTATTGGGTG
TATGTACcaactgaaaacaaaaacaaCGCTCACTTTTCAACAGAGACTCA
AGAAACGGGTACTGACATAGCAATACCTAATTCTAATGGCTTTGTTGATG
CAACAGGTGATTTGCACCCAGATCTGGTCGTCAAATCAATAGCN
Run BLAST on NCBI

transcript from alignment at scaffold_457:205839..208730+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066635 ID=TCONS_00066635|Name=TCONS_00066635|organism=Clytia hemisphaerica|type=transcript|length=2892bp|location=Sequence derived from alignment at scaffold_457:205839..208730+ (Clytia hemisphaerica)
acagactaaaaactaaaaaaattcatCACAGAAAATAATGATCTAATTAC
ATATTAACGAAATGAAACCCATTGCTCTGTTCTTGGTTTTCTTGACTTGC
CATGATGTTTTATCATCTGTCAGTGATCAAACGTCAGAAGTTGGATTAGC
AGATATAGAAGGAGTTATTGCTGGGTATGGTGATTTCAATTCCGACCAAG
CAACAGATGTTTTTGTCATTTCAAAGGATTGTAAGTTGCCAAAAATACTT
CCAGTAACCTATCACTTGTGGTAAACCCCCTAAAATACCAACAATAATGC
AACAACTAAAACCTAACTTTGATTGTGTGAAAAAAGACTCGACAGTGGAG
TAGTTCGTACTTAACACTATGGCAAACACCCTTTTAACTTCTGAATTCCT
TTATTTTCAGGGGCAACAGTTCATGTTTATCTTTGGAATGTGAGGAACCA
AAAGTTTACAAAAGGAGATGCGACAGTAAAGAGGTAGTTTTATTATTCAT
TCTTTATCTTCATCAACTTCTCTGACTGACATTGCTGACTTAAACAATTA
GTTTTTGGCTGAACTCAAAAAATTTAGCGTTGTATTGGTATTGCTCCATG
TATAGAGGGAAAGTAACTAGTAAAACCTGTGAACAATGAAAAAATCGACT
TGATCTGAAGTAAATACTGTAAATCTATCTTCAATAAAGACACGCGggtt
aaaaattgaataagGGGTATTTTGTAAGGCACTTTCAGGTATTACATCCT
TGTGTATGACCAGGTATTATATCCTTGAAATGTATAAAGTAGACTATAAT
TATTGCTTTTTTTCTACATAGTGAGAATATAGTCAACATCGTTCCAGCAG
ACTTTAATGGTGATGGTGATATGGATTTATTGATCTCCACTGAATCATCA
AAGAAAACAGTCATCTCTCAAGTTTATTTTGGGAACCGCAAATCATTGAC
TAAATGTGAGtgaattattttatttcaaagaatAGATTGTGGATAAATGT
TTTCTGTTTTGACTAACATTTAATGGGGACAAATACATCTAAACCGCTGA
TGTATAAAATCTATATAAAGTGTACCATTAATTCTCACCCcatttcatct
gaaaaaaagcattttattcTTTGCAAATAGTGTATCAGTGGATTTCTGTT
TTAAACTTACATgagtttagaaaatattttattttgggTTTAGTATGAAT
AATGACCTTCTTGAACGTCTAAATCCATAGCTGATGACCTGAAGATTGAG
GCCAAAGATCAACCAACAGTCTTTGAGTAAGTTATTATTAGGCTGTTCAA
GTGTACTGTAGGGTTGCTAAACTTTCTTTTATTcctatgaaaaaatttct
gacgTATTTCTGCAACCCCCTGCTGTTTTTCCAGGCATaccagcaaaaat
aaatttttctgttGCGTAAAAATGCTTACACAACACCTAAATGCCTTGAG
ATAACCACCTAGCAAATTGAAGTAACTAGGATTTTTTTGTTGTAAAAATA
GCAACATGGATATTTTGcttaaaatgggaaaatttaGCAATCTTTACATT
ATGAACTTGTAATATTTTGACCCGAATCAAATCCCCTTCAATAACTAAGA
ACAAATGATTAACTTCGAGATTGTTACATTATATTCCTTATTAAAGAacc
caattcatgatatgcaccattgcaatgtcttccgttccacccaatagctg
attggttcaaaGTGACGTActgactgcttttacgtcacttccaaccaatg
agctattggttctgtgacgtaatgttagaagacattgcagtggtgcatat
cgtGAATACAGTCTTTATTTCGATATAAAACTTGACTGTATTGAGACATC
TTCAGCTCTTGCTTAGGAAAGGCAGAGtggctctatctagtgttttatgt
aAGATATCTGTAATGCTACCTCTTGAATACAAAGCTTTTGACTGATGTTC
GAATTGTTTTCAGTATGAATGGTGACTACTTACCAGACCTCTTTGGTACA
GATTTGAATGGTAATCGAACTTATTGGGTGTATGTACcaactgaaaacaa
aaacaagtaTGATTCTTACCTTTTTTGGTACAGTGTTTTCACATTTAAAG
ATAATTTGTCAACTCTggcttttttaaattattaacCTTTTCTATTAACT
TatgaaataaattataaattatcatacagttgactctctctaattccaTC
TTCATTGGAGCAAATATTTTCTTCGaaatagagaaagattcgaattacag
agagtaatttaaaccactttcttgctgaggggaccaatattttaNttaga
gaaagattcgaattacagatagtaatttaaaccactttcttgctgagggg
accaatattttagttcgattaaagaaagatttaaataaaagaagttcgaa
ttagagtgcGTTGACTgtgaaatcaatgaaataaaattatCCTACCCTCT
TGTAATGAATCTTATCTTGCTTACCCTGGCTATCGTTGTCTTTTTTCAGC
GCTCACTTTTCAACAGAGACTCAAGAAACGGGTACTGACATAGCAATACC
TAATTCTAATGGCTTTGTTGATGCAACAGGTGATTTGCACCCAGGTAAGA
TCTCTTTGGTTATCCTTATCATTTTGTTTTCTTGTACCTGAGAATGGCTT
CCAAAGGCAACATAATATTGGGATATCATTACTTGACTAAGTGATATTGT
TGTGCAATAAAAACTAGTAAAGGTTATGGGTTCCTTTAAAGACTTACCAA
AATCTGAAGAATACTGAAACCCTGACCAAATATCGTGATGAAGACAATTA
AGCCCAATACTGAAGTACAAGCTTTTTGGAAGTCCCCGCCACTTAATTTA
TCCTTTTTTTGTTACATAGATCTGGTCGTCAAATCAATAGCN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041679XLOC_041679Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066635-exon-scaffold_457-1491911889:205839..206068TCONS_00066635-exon-scaffold_457-1491911889:205839..206068Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1510915933:205839..206068TCONS_00066635-exon-scaffold_457-1510915933:205839..206068Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1575043694:205839..206068TCONS_00066635-exon-scaffold_457-1575043694:205839..206068Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1491911889:206249..206321TCONS_00066635-exon-scaffold_457-1491911889:206249..206321Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1510915933:206249..206321TCONS_00066635-exon-scaffold_457-1510915933:206249..206321Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1575043694:206249..206321TCONS_00066635-exon-scaffold_457-1575043694:206249..206321Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1491911889:206660..206793TCONS_00066635-exon-scaffold_457-1491911889:206660..206793Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1510915933:206660..206793TCONS_00066635-exon-scaffold_457-1510915933:206660..206793Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1575043694:206660..206793TCONS_00066635-exon-scaffold_457-1575043694:206660..206793Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1491911889:207069..207114TCONS_00066635-exon-scaffold_457-1491911889:207069..207114Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1510915933:207069..207114TCONS_00066635-exon-scaffold_457-1510915933:207069..207114Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1575043694:207069..207114TCONS_00066635-exon-scaffold_457-1575043694:207069..207114Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1491911889:207802..207894TCONS_00066635-exon-scaffold_457-1491911889:207802..207894Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1510915933:207802..207894TCONS_00066635-exon-scaffold_457-1510915933:207802..207894Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1575043694:207802..207894TCONS_00066635-exon-scaffold_457-1575043694:207802..207894Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1491911889:208338..208432TCONS_00066635-exon-scaffold_457-1491911889:208338..208432Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1510915933:208338..208432TCONS_00066635-exon-scaffold_457-1510915933:208338..208432Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1575043694:208338..208432TCONS_00066635-exon-scaffold_457-1575043694:208338..208432Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1491911889:208708..208730TCONS_00066635-exon-scaffold_457-1491911889:208708..208730Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1510915933:208708..208730TCONS_00066635-exon-scaffold_457-1510915933:208708..208730Clytia hemisphaericaexon
TCONS_00066635-exon-scaffold_457-1575043694:208708..208730TCONS_00066635-exon-scaffold_457-1575043694:208708..208730Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_457supercontigscaffold_457:205839..208730 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.44984	3.5927	6.77667	1.46737	11.5073	16.3779	11.1203	13.7245	13.2766	12.378	0.6867	8.45968	5.96313	5.71656	3.64862	5.19632	7.02117	10.6606	0.297334	9.92214	2.50472	1.25148	0.82583	3.90766e-08	10.7716	5.35469	4.78493	0	7.49159e-07	2.74593
Blast
[Close]
BLAST of TCONS_00066635 vs. Swiss-Prot (Human)
Match: TIP (T-cell immunomodulatory protein OS=Homo sapiens GN=ITFG1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 7.028e-16
Identity = 57/210 (27.14%), Postives = 109/210 (51.90%), Query Frame = 2 
Query:  116 SVSDQTSEVGLADIEGVIAGYGDFNSDQATDVFVISKDWATVHVYLWNVRNQKFTKGDATVKSEN----IVNIVPADFNGDGDMDLLIS---TESSKKTVISQVYFGNRKSLTKSDD--LKIEAKDQPTVFDMNGDYLPDLFGTD---------LNGNRTYWVYVPTENKNNAHFSTETQETGTDIAIPNSNGFVDATGDLHPDLVVKSI 691
            ++ + T+E+  A+  G +A +GD NSD+ TD+FV+ ++   + V+L + +N  + K    V  +N    I ++VP D++GD  MD+L++      +K  + + +++G  ++L  ++   L    +D+P + D NGD +PD+FG           L GN ++   + T +K               + IP+S+ F+D T D   DL + ++
Sbjct:   33 ALHNVTAELFGAEAWGTLAAFGDLNSDKQTDLFVL-RERNDLIVFLAD-QNAPYFKPKVKVSFKNHSALITSVVPGDYDGDSQMDVLLTYLPKNYAKSELGAVIFWGQNQTLDPNNMTILNRTFQDEPLIMDFNGDLIPDIFGITNESNQPQILLGGNLSWHPALTTTSK---------------MRIPHSHAFIDLTEDFTADLFLTTL 225
The following BLAST results are available for this feature:
BLAST of TCONS_00066635 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TIP7.028e-1627.14T-cell immunomodulatory protein OS=Homo sapiens GN... [more]
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