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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066633 ID=TCONS_00066633|Name=TCONS_00066633|organism=Clytia hemisphaerica|type=transcript|length=1015bp
GTTTCAACCAATGACATTGCTGGCTATGATGAAGGTTTACTACTGGCCCT
AATTTTTGGCGCTAATGGCTTTTGGCACTTTGGATGACAAGCTGTCTTAT
AACTTTTGTTTCAATAGTTGGTGTTATTAAGGGTTGAATGTTTTCTTCTC
TTTAGTTCTCAAACAAAAGCAGGAATTTAATGCTAGTGTTTGATTTTTAA
AGTATCCTTTCTGATTGGACGAAAGCAACCTTCATTTGATTGGATACAAT
TGCACAGCaactttttgattgaaaaaaaataaaatagGTAGAGGACAACA
ATATATACTGCATGATGTCAGCGGAGGAATCTACAACTGAATTCTTACTG
CATTCCAATCAGTTTAAACTTAAATCAATAATGCCAGAATGCCGAAGGTG
TCACAGCAAATTCATTCAAATGATAATGCCATTAATGATAACACTAATTG
GAACCATAATAGTGTTTGTTGGTGGGCTGACGAGACTCTACAAAACAGAT
ATTAGGCTTGCTATTGGTATCATGCTGATATTTTTCAACATTATTACATT
CTTTGTATTTGGTCTTGATAAATGTTGCGCTAGAAATGAAGGATCAAGGG
TTGCAGAAATGGTGTTGTTTTACATGACCTTTTTTGGAAGTCCCGTTGGT
GCTGTTCTTGGAATGCTTTTCTTTAGACACAAAACAGCAAAAAGGGAGTT
TATTTGTGTCATTGTTCTATTGTGCTTCTTTAATTTGCTTTGGCTTTTTG
TCTATTTCGTGGCTACAGCCAAGACAAGCCTCTCTGCTGCATATAGGAGC
TAACTTTGATTATGCTACTGAGGAACTATAGTTagcaaaattttcttcat
ttgaaatattttgcaagTTCTCTCGCATTTTCTCAAGTTaaacaatttta
tttcaaaatttgtgtgattttttttgtggtGATTTTTAAACTACAAGAGA
TAGAATTAAGGTGAAAATAATGTAAATAAGCATAATCTCATAATTGCAAT
CATTTTTAATTGTAT Run BLAST on NCBI protein sequence of TCONS_00066633-protein >TCONS_00066633-protein ID=TCONS_00066633-protein|Name=TCONS_00066633-protein|organism=Clytia hemisphaerica|type=polypeptide|length=163bp
MMSAEESTTEFLLHSNQFKLKSIMPECRRCHSKFIQMIMPLMITLIGTII
VFVGGLTRLYKTDIRLAIGIMLIFFNIITFFVFGLDKCCARNEGSRVAEM
VLFYMTFFGSPVGAVLGMLFFRHKTAKREFICVIVLLCFFNLLWLFVYFV
ATAKTSLSAAYRS Run BLAST on NCBI transcript from alignment at scaffold_457:202565..205412+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066633 ID=TCONS_00066633|Name=TCONS_00066633|organism=Clytia hemisphaerica|type=transcript|length=2848bp|location=Sequence derived from alignment at scaffold_457:202565..205412+ (Clytia hemisphaerica)
GTTTCAACCAATGACATTGCTGGCTATGATGAAGGTTTACTACTGGCCCT
AATTTTTGGCGCTAATGGCTTTTGGCACTTTGGATGACAAGCTGTCTTAT
AACTTTTGTTTCAATAGTTGGTGTTATTAAGGGTTGAATGTTTTCTTCTC
TTTAGTTCTCAAACAAAAGCAGGAATTTAATGCTAGTGTTTGATTTTTAA
AGTATCCTTTCTGATTGGACGAAAGCAACCTTCATTTGATTGGATACAAT
TGCACAGCaactttttgattgaaaaaaaataaaataggtAATCAATATTG
CAGTGATTTgataataaaatatttaaaatgcgTTCACAAGTGTCTGGGAT
TGATCAAATTAAACAATTTAAATATTCTCCAGGGGGTGAATTCTAGTTTT
CCTTCTATTCTCCATATTTGCCAACATACAAAAGctcatgaaaaatttca
aaattgaacgttttttttaggttttgattTACCACACCTCTGGAAATTAG
GAACTTTTTGgcaaaaaggtttttgaaacattttgtaaaatattcttttt
ttttctttttttattgattttagcTGATGATTGTCGTCCATACAGGcggc
atgaaacttaaagttctaaattaataattaatagtctctttcttttaact
taaaacattcttttaaaTACATATTTAAAGGTAGAGGACAACAATATATA
CTGCATGATGTCAGCGGAGGAATCTACAACTGAATTCTTACTGCATTCCA
ATCAGGTACAATGATTGATATTCCGTatcttatttcatttttttgcacTT
TATTTAGATTTCATTATCTTTCAGTTACTGAGATTTGAAAATTATAGGAA
AGATAACTAATTTAAATATAAAGTGATTACGTGTTATATCTGCCATTGta
gaaaagaaaagtattggTATAGaaaatgtatgtatgtatgtatattGCAC
CATTATAATTATGATGGTTGTTAGCATAATGTTCATGACacttatttttg
tattttgatattcatggctccgactggggttctaggtccccccgccaaat
ttaggtcccccctgagaacaaggtcccccccagcctgataaaattttagg
tcccagtataggggaaacattttatggcattcacaaagctctatttacat
gtgtgtgcactttCAGAGAATGCAATAgattgtcttcatttttgcatttt
aaggatcagatcacactttgcatgaaaacataaaggtttagttagagaaa
ttaaaaaccaacagtaaagaaaaatatttaggaagtgtTATTTAGCCCCC
AGAGTTACATTAACTAATGCAGGTCCCCCCCAAGATAGAGCTCCCCCCGC
CTGTCAGGAAAAACAAGCAGCTCCCATCTCTTATATGGAAAATTTTAGGT
GTAGCTCCCCCTGCTcaggcggggggggggggggagccATNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGG
GGGGCTGAACTATCAGAAACTTTGAGAAATGAAAATTAACAATGATGTCT
TCAAATATATTCTAAAATTGGCTATACATTTCTTTTGCCCTAGAAGCCTC
ATTCTAAACAATTTCTAGCCAACTTTAGTTAATTAAACTGAGCCACTTAA
TCTTCATGAAAGCATAACATTTCAGCAAACCTTGTCTGTTGTTTTTAAAC
TCAGATAATGTATATGTTTGTTACATTTTTGTAAACGTGTGTTGTTTTTT
GTGTTTCATCTTGTATAATTTTATTCTGCACTTGTCCATTATAGTTACAC
TTACTTTCAAAGATCATGACTAAACTTTTGATTTTGGTTTCATTTTATCA
TATTATCATAATGTCGCTATACTTTAAAGATTGTCATTAGTGTAGTAATT
GATTGTAAATAAAGTAAAGTAAAACTGCACATACATGCACATTTAAATTA
AATTCTTGTTTACAATACTATTtcttattcaactttttgtttcAGTTTAA
ACTTAAATCAATAATGCCAGAATGCCGAAGGTGTCACAGCAAATTCATTC
AAATGATAATGCCATTAATGATAACACTAATTGGAACCATAATAGTGTTT
GTTGGTGGGCTGACGAGACTCTACAAAACAGATATTAGGCTTGCTATTGG
TATCATGCTGATATTTTTCAACATTATTACATTCTTTGTATTTGGTCTTG
ATAAATGTTGCGCTAGAAATGAAGGATCAAGGGTTGCAGAAATGGTGTTG
TTTTACATGACCTTTTTTGGAAGTCCCGTTGGTGCTGTTCTTGGAATGCT
TTTCTTTAGACACAAAACAGCAAAAAGGGAGTTTATTTGTGTCATTGTTC
TATTGTGCTTCTTTAATTTGCTTTGGCTTTTTGTCTATTTCGTGGCTACA
GCCAAGACAAGCCTCTCTGCTGCATATAGGAGCTAACTTTGATTATGCTA
CTGAGGAACTATAGTTagcaaaattttcttcatttgaaatattttgcaag
TTCTCTCGCATTTTCTCAAGTTaaacaattttatttcaaaatttgtgtga
ttttttttgtggtGATTTTTAAACTACAAGAGATAGAATTAAGGTGAAAA
TAATGTAAATAAGCATAATCTCATAATTGCAATCATTTTTAATTGTAT Coding sequence (CDS) from alignment at scaffold_457:202565..205412+ >TCONS_00066633 ID=TCONS_00066633|Name=TCONS_00066633|organism=Clytia hemisphaerica|type=CDS|length=984bp|location=Sequence derived from alignment at scaffold_457:202565..205412+ (Clytia hemisphaerica)
ATGATGTCAGCGGAGGAATCTACAACTGAATTCTTACTGCATTCCAATCA
GTTTAAACTTAAATCAATAATGCCAGAATGCCGAAGGTGTCACAGCAAAT
TCATTCAAATGATAATGCCATTAATGATAACACTAATTGGAACCATAATA
GTGTTTGTTGGTGGGCTGACGAGACTCTACAAAACAGATATTAGGCTTGC
TATTGGTATCATGCTGATATTTTTCAACATTATTACATTCTTTGTATTTG
GTCTTGATAAATGTTGCGCTAGAAATGAAGGATCAAGGGTTGCAGAAATG
GTGTTGTTTTACATGACCTTTTTTGGAAGTCCCGTTGGTGCTGTTCTTGG
AATGCTTTTCTTTAGACACAAAACAGCAAAAAGGGAGTTTATTTGTGTCA
TTGTTCTATTGTGCTTCTTTAATTTGCTTTGGCTTTTTGTCTATTTCGTG
GCTACAGCCAAGACAAGCCTCTCTGCTGCATATAGGAGCTAAATGATGTC
AGCGGAGGAATCTACAACTGAATTCTTACTGCATTCCAATCAGTTTAAAC
TTAAATCAATAATGCCAGAATGCCGAAGGTGTCACAGCAAATTCATTCAA
ATGATAATGCCATTAATGATAACACTAATTGGAACCATAATAGTGTTTGT
TGGTGGGCTGACGAGACTCTACAAAACAGATATTAGGCTTGCTATTGGTA
TCATGCTGATATTTTTCAACATTATTACATTCTTTGTATTTGGTCTTGAT
AAATGTTGCGCTAGAAATGAAGGATCAAGGGTTGCAGAAATGGTGTTGTT
TTACATGACCTTTTTTGGAAGTCCCGTTGGTGCTGTTCTTGGAATGCTTT
TCTTTAGACACAAAACAGCAAAAAGGGAGTTTATTTGTGTCATTGTTCTA
TTGTGCTTCTTTAATTTGCTTTGGCTTTTTGTCTATTTCGTGGCTACAGC
CAAGACAAGCCTCTCTGCTGCATATAGGAGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066633-exon-scaffold_457-1491911889:202565..202851 | TCONS_00066633-exon-scaffold_457-1491911889:202565..202851 | Clytia hemisphaerica | exon |
| TCONS_00066633-exon-scaffold_457-1510915933:202565..202851 | TCONS_00066633-exon-scaffold_457-1510915933:202565..202851 | Clytia hemisphaerica | exon |
| TCONS_00066633-exon-scaffold_457-1575043694:202565..202851 | TCONS_00066633-exon-scaffold_457-1575043694:202565..202851 | Clytia hemisphaerica | exon |
| TCONS_00066633-exon-scaffold_457-1491911889:203245..203319 | TCONS_00066633-exon-scaffold_457-1491911889:203245..203319 | Clytia hemisphaerica | exon |
| TCONS_00066633-exon-scaffold_457-1510915933:203245..203319 | TCONS_00066633-exon-scaffold_457-1510915933:203245..203319 | Clytia hemisphaerica | exon |
| TCONS_00066633-exon-scaffold_457-1575043694:203245..203319 | TCONS_00066633-exon-scaffold_457-1575043694:203245..203319 | Clytia hemisphaerica | exon |
| TCONS_00066633-exon-scaffold_457-1491911889:204760..205412 | TCONS_00066633-exon-scaffold_457-1491911889:204760..205412 | Clytia hemisphaerica | exon |
| TCONS_00066633-exon-scaffold_457-1510915933:204760..205412 | TCONS_00066633-exon-scaffold_457-1510915933:204760..205412 | Clytia hemisphaerica | exon |
| TCONS_00066633-exon-scaffold_457-1575043694:204760..205412 | TCONS_00066633-exon-scaffold_457-1575043694:204760..205412 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_457 | supercontig | scaffold_457:202565..205412 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR010718 | DUF1294 |
Blast
The following BLAST results are available for this feature:
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