|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066631 ID=TCONS_00066631|Name=TCONS_00066631|organism=Clytia hemisphaerica|type=transcript|length=2089bp
cggcaatttagaggttgttcgtaatacacGATTTGGcgtacgcgtaacac
ttgtgttcagaccccctccccccttgctcttatcggccaaaattttcgaa
accaatttttacatcttcgaaaacacaattttttccaatcatGTCCGCCA
TCGCGTTGATCTTGCCTTCCCACCCGTCTTTGTTGAGTTTTTGTCTATTT
GCACCAGTattgagtttgttcataccTGCATTGGtattgttaatcaaaac
gaaagttaaaaagacGCGATGAAGTCGCAACATTTCGAAGGAAATGGCAG
CAcgctggccaatgaaaaaagagtttttttatcaaagctaatTCAAAACT
GTATTTTTAAAGTTGCAAATTTGTGTGCgaaggtgaaagcaagtgaaatt
gTATGCTTTCAGTTGAGTTTGTGgacaaaatcagaaagaaattggctgaa
aaaattttcgtcccaatacttgtttttttatcggtatgtagTTGGACCCC
CCTCCCACCCCCTTATAGGCCCAATGCtgataaaaaattctaaagttTTT
TGTCGAGGATCCCAAtgtagtttcttcttttttaaagggACCCTtcgctt
aaaaatgataacaagacaCTCACTTGATAATCATATGAAAAGCTACTTTC
CGAGTGTGTTCGAACTGTCTAGAATCCGCGCTCTCCTCCCAAGAAAAACC
TTTTGCTTGGAGTCGAGTTGCAGGTTTATGGTTAATCGATGTCGGCTTCA
GAACTCCCAATGAGCCCCGGTTGTGTTGGTTTAAGTCAGACGGAGACGCC
ATACTGTTTTCAGAGGAGTTTTTCGATATCTCTACAGGAACTAGCAGTAA
GTTTTAAGTTCTTTGGATATGTTGTTAGGGGTTTTTGGACCAATATAGTT
TCATTTCCTAAAGATCACAaacaagcgaggggtcccttttAATTAAGTTC
ATTCATCCAAGAAGTTTAATGTTACTTCGCCATGTTTGTTTTTGATTGAT
CGCTCTGGCTGTTTCAAAAACCATAACAAACGAACCAATGTTTATGCCTC
GGGTCCTCTTTGTTTGACGGCCCACATGACCCACAAATTCTTGTAGACTG
CCGGTTTTTTCTGTCGCTTTATATTACGGAGATGAAAAATTCCGGGATTC
TTGGggaaaaaaagtttagaaattatctccgttatttTTTTAATGTAAAC
TATGCGAGCAgtaggccaggcccaattgatagtttggttTGTGTCCTCTG
ACCAGCTCTAAACTTTTGCATCCATTGAAGTATGGAGTATTTAGTTATGC
AATAGAACTTTCCTAAAGGAGTATTTTTTTTAGTCTATGTCTCAAAATTC
TGGTAATTTCTCATAAGTTACTTTCATTATTGAAAGcttcaaataaaata
tttattagaAGGGTAGAATTTTTAATTGTTTAATGTCTGTTTCAACCAAT
GACATTGCTGGCTATGATGAAGGTTTACTACTGGCCCTAATTTTTGGCGC
TAATGGCTTTTGGCACTTTGGATGACAAGCTGTCTTATAACTTTTGTTTC
AATAGTTGGTGTTATTAAGGGTTGAATGTTTTCTTCTCTTTAGTTCTCAA
ACAAAAGCAGGAATTTAATGCTAGTGTTTGATTTTTAAAGTATCCTTTCT
GATTGGACGAAAGCAACCTTCATTTGATTGGATACAATTGCACAGCaact
ttttgattgaaaaaaaataaaataggtAATCAATATTGCAGTGATTTgat
aataaaatatttaaaatgcgTTCACAAGTGTCTGGGATTGATCAAATTAA
ACAATTTAAATATTCTCCAGGGGGTGAATTCTAGTTTTCCTTCTATTCTC
CATATTTGCCAACATACAAAAGctcatgaaaaatttcaaaattgaacgtt
ttttttaggttttgattTACCACACCTCTGGAAATTAGGAACTTTTTGgc
aaaaaggtttttgaaacattttgtaaaatattctttttttttcttttttt
attgattttagcTGATGATTGTCGTCCATACAGGcggcatgaaacttaaa
gttctaaattaataattaatagtctctttcttttaactt Run BLAST on NCBI transcript from alignment at scaffold_457:201127..203215+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00066631 ID=TCONS_00066631|Name=TCONS_00066631|organism=Clytia hemisphaerica|type=transcript|length=2089bp|location=Sequence derived from alignment at scaffold_457:201127..203215+ (Clytia hemisphaerica)
cggcaatttagaggttgttcgtaatacacGATTTGGcgtacgcgtaacac
ttgtgttcagaccccctccccccttgctcttatcggccaaaattttcgaa
accaatttttacatcttcgaaaacacaattttttccaatcatGTCCGCCA
TCGCGTTGATCTTGCCTTCCCACCCGTCTTTGTTGAGTTTTTGTCTATTT
GCACCAGTattgagtttgttcataccTGCATTGGtattgttaatcaaaac
gaaagttaaaaagacGCGATGAAGTCGCAACATTTCGAAGGAAATGGCAG
CAcgctggccaatgaaaaaagagtttttttatcaaagctaatTCAAAACT
GTATTTTTAAAGTTGCAAATTTGTGTGCgaaggtgaaagcaagtgaaatt
gTATGCTTTCAGTTGAGTTTGTGgacaaaatcagaaagaaattggctgaa
aaaattttcgtcccaatacttgtttttttatcggtatgtagTTGGACCCC
CCTCCCACCCCCTTATAGGCCCAATGCtgataaaaaattctaaagttTTT
TGTCGAGGATCCCAAtgtagtttcttcttttttaaagggACCCTtcgctt
aaaaatgataacaagacaCTCACTTGATAATCATATGAAAAGCTACTTTC
CGAGTGTGTTCGAACTGTCTAGAATCCGCGCTCTCCTCCCAAGAAAAACC
TTTTGCTTGGAGTCGAGTTGCAGGTTTATGGTTAATCGATGTCGGCTTCA
GAACTCCCAATGAGCCCCGGTTGTGTTGGTTTAAGTCAGACGGAGACGCC
ATACTGTTTTCAGAGGAGTTTTTCGATATCTCTACAGGAACTAGCAGTAA
GTTTTAAGTTCTTTGGATATGTTGTTAGGGGTTTTTGGACCAATATAGTT
TCATTTCCTAAAGATCACAaacaagcgaggggtcccttttAATTAAGTTC
ATTCATCCAAGAAGTTTAATGTTACTTCGCCATGTTTGTTTTTGATTGAT
CGCTCTGGCTGTTTCAAAAACCATAACAAACGAACCAATGTTTATGCCTC
GGGTCCTCTTTGTTTGACGGCCCACATGACCCACAAATTCTTGTAGACTG
CCGGTTTTTTCTGTCGCTTTATATTACGGAGATGAAAAATTCCGGGATTC
TTGGggaaaaaaagtttagaaattatctccgttatttTTTTAATGTAAAC
TATGCGAGCAgtaggccaggcccaattgatagtttggttTGTGTCCTCTG
ACCAGCTCTAAACTTTTGCATCCATTGAAGTATGGAGTATTTAGTTATGC
AATAGAACTTTCCTAAAGGAGTATTTTTTTTAGTCTATGTCTCAAAATTC
TGGTAATTTCTCATAAGTTACTTTCATTATTGAAAGcttcaaataaaata
tttattagaAGGGTAGAATTTTTAATTGTTTAATGTCTGTTTCAACCAAT
GACATTGCTGGCTATGATGAAGGTTTACTACTGGCCCTAATTTTTGGCGC
TAATGGCTTTTGGCACTTTGGATGACAAGCTGTCTTATAACTTTTGTTTC
AATAGTTGGTGTTATTAAGGGTTGAATGTTTTCTTCTCTTTAGTTCTCAA
ACAAAAGCAGGAATTTAATGCTAGTGTTTGATTTTTAAAGTATCCTTTCT
GATTGGACGAAAGCAACCTTCATTTGATTGGATACAATTGCACAGCaact
ttttgattgaaaaaaaataaaataggtAATCAATATTGCAGTGATTTgat
aataaaatatttaaaatgcgTTCACAAGTGTCTGGGATTGATCAAATTAA
ACAATTTAAATATTCTCCAGGGGGTGAATTCTAGTTTTCCTTCTATTCTC
CATATTTGCCAACATACAAAAGctcatgaaaaatttcaaaattgaacgtt
ttttttaggttttgattTACCACACCTCTGGAAATTAGGAACTTTTTGgc
aaaaaggtttttgaaacattttgtaaaatattctttttttttcttttttt
attgattttagcTGATGATTGTCGTCCATACAGGcggcatgaaacttaaa
gttctaaattaataattaatagtctctttcttttaactt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00066631-exon-scaffold_457-1491911889:201127..203215 | TCONS_00066631-exon-scaffold_457-1491911889:201127..203215 | Clytia hemisphaerica | exon |
| TCONS_00066631-exon-scaffold_457-1510915933:201127..203215 | TCONS_00066631-exon-scaffold_457-1510915933:201127..203215 | Clytia hemisphaerica | exon |
| TCONS_00066631-exon-scaffold_457-1575043694:201127..203215 | TCONS_00066631-exon-scaffold_457-1575043694:201127..203215 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_457 | supercontig | scaffold_457:201127..203215 + |
Blast
The following BLAST results are available for this feature:
|
