TCONS_00066622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066622
Unique NameTCONS_00066622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066622 ID=TCONS_00066622|Name=TCONS_00066622|organism=Clytia hemisphaerica|type=transcript|length=329bp
AAGCCAATAAAAcgaattttgaacaattttcgaCCTTACCCCCTGAATAC
TTTATGGTTTTATATTTAGCAACCTCGTCCCAGTCTCCAAAAAATTTTAA
ATTACGATATCTCGTGATCAGATTATCCTAGAataaaaagtgaccccatt
ttctgACGCAGAATTTTATGCTCTTTGTAACTGAAGTAGATTCAAGGTTT
GATTCTGACTtttaaattcagattttttagaaaaactgcTAAAAAGGGAC
TGGGcacgaattttgaaaatttttttaaatttgaattttttttgcaaaat
cataTCCTTTAAGAACATCTATAGGTTTG
Run BLAST on NCBI

transcript from alignment at scaffold_456:750564..750892

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066622 ID=TCONS_00066622|Name=TCONS_00066622|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at scaffold_456:750564..750892 (Clytia hemisphaerica)
CAAACCTATAGATGTTCTTAAAGGAtatgattttgcaaaaaaaattcaaa
tttaaaaaaattttcaaaattcgtgCCCAGTCCCTTTTTAgcagtttttc
taaaaaatctgaatttaaaAGTCAGAATCAAACCTTGAATCTACTTCAGT
TACAAAGAGCATAAAATTCTGCGTcagaaaatggggtcactttttatTCT
AGGATAATCTGATCACGAGATATCGTAATTTAAAATTTTTTGGAGACTGG
GACGAGGTTGCTAAATATAAAACCATAAAGTATTCAGGGGGTAAGGtcga
aaattgttcaaaattcgTTTTATTGGCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041670XLOC_041670Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066622-exon-scaffold_456-1491911889:750564..750892TCONS_00066622-exon-scaffold_456-1491911889:750564..750892Clytia hemisphaericaexon
TCONS_00066622-exon-scaffold_456-1510915933:750564..750892TCONS_00066622-exon-scaffold_456-1510915933:750564..750892Clytia hemisphaericaexon
TCONS_00066622-exon-scaffold_456-1575043694:750564..750892TCONS_00066622-exon-scaffold_456-1575043694:750564..750892Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:750564..750892 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.745185	0.288293	0.4425	0	2.23098	2.26109	13.1674	18.4766	5.0347	4.0406	3.51798	4.51052	1.00132	0.816763	0	0.180153	0.665801	0.887825	3.72016	0.32886	3.54568	2.05087	0.860895	0.509596	0.317413	0.283283	6.31346	8.36604	0	1.07132
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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