TCONS_00066620 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066620
Unique NameTCONS_00066620
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length404

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066620 ID=TCONS_00066620|Name=TCONS_00066620|organism=Clytia hemisphaerica|type=transcript|length=404bp
CGGAAAAACAAAATCAGGGAAACGGCAGGTATTTTTGGTAATAGTATACA
TTTTCAATTGCaagaaaatgaggaaaaattgacgtcaaaaagacgAATTT
TGATCCGACATGAAATGTCAATTAACAAATGAAATTTATATCATCTATCT
ACAATCTGGATAACAACTATCAAAAAAAACTAGCAATAGTGTTCAGAAAA
GCATTCGTAAGATAGGTGTTCACTTAAATGTCATTTTGATACAATTTCCT
TCTTTCTTGGGAACCTGTCTCAACCTAGGCACAAATTGCTTCAATGATTT
CCAAATTTCAACAACAGCAGTAGCCATTTCATTCCAAACTCTCCTTATCC
TTCTTTTTAACTGTTCTTCGTTTTCAAATGGTTGATTGAATCGACCTTCG
TACA
Run BLAST on NCBI

transcript from alignment at scaffold_456:590710..591113

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066620 ID=TCONS_00066620|Name=TCONS_00066620|organism=Clytia hemisphaerica|type=transcript|length=404bp|location=Sequence derived from alignment at scaffold_456:590710..591113 (Clytia hemisphaerica)
TGTACGAAGGTCGATTCAATCAACCATTTGAAAACGAAGAACAGTTAAAA
AGAAGGATAAGGAGAGTTTGGAATGAAATGGCTACTGCTGTTGTTGAAAT
TTGGAAATCATTGAAGCAATTTGTGCCTAGGTTGAGACAGGTTCCCAAGA
AAGAAGGAAATTGTATCAAAATGACATTTAAGTGAACACCTATCTTACGA
ATGCTTTTCTGAACACTATTGCTAGTTTTTTTTGATAGTTGTTATCCAGA
TTGTAGATAGATGATATAAATTTCATTTGTTAATTGACATTTCATGTCGG
ATCAAAATTcgtctttttgacgtcaatttttcctcattttcttGCAATTG
AAAATGTATACTATTACCAAAAATACCTGCCGTTTCCCTGATTTTGTTTT
TCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041668XLOC_041668Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066620-exon-scaffold_456-1491911889:590710..591113TCONS_00066620-exon-scaffold_456-1491911889:590710..591113Clytia hemisphaericaexon
TCONS_00066620-exon-scaffold_456-1510915933:590710..591113TCONS_00066620-exon-scaffold_456-1510915933:590710..591113Clytia hemisphaericaexon
TCONS_00066620-exon-scaffold_456-1575043694:590710..591113TCONS_00066620-exon-scaffold_456-1575043694:590710..591113Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:590710..591113 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.727749	0.887087	2.47198	2.41845	0.245352	0.387762	0	0.875931	0	0.189905	0	0	0.484003	0.12566	0.30993	0.221735	0.273159	0	0.773613	0.80953	0.351814	0	0	0.189653	0.781351	0.697337	0	0.266243	0.201936	0.411482
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066620 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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