TCONS_00066610 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066610
Unique NameTCONS_00066610
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1783

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066610 ID=TCONS_00066610|Name=TCONS_00066610|organism=Clytia hemisphaerica|type=transcript|length=1783bp
CTTTCAATCTGCCTCCCCAGTTTGAGGGCAAGCCAACACATTAATGCttt
attttatagaaaaaaaatcataacaactcTCACATTGTACTACATTTATA
TTCCCCTTTGTAACaacttaaaaatttttttacatgaatgAACATATTCA
CACTTAATAATCATTATGAAGACAATTTACAAATCAGcattaaaaatcaa
atataataaaaaccaatttaaaaaagaaacttttaaaagtgCTCAAAAGT
TGgcatatttaaaatgaaaaaggaTTTTAAACACTGAAAATCAATTTGAT
AAATAATAAAGCAAAAGGAGACAATGAAGTTAATACAAATTCAGTGAGGA
ACTGATAACTTTGtggaaaaagtaaaaagataaaatccaaaaatagataa
caaagattataaaaatgtaACCAAACTGATAATATGACCttcaatctttc
aagaaatatattgagaattccggttattttgacgtttttcgagatttaaa
gttcgggcgaaaaagccgattttgggctatctctttaatttaattgaata
tttcaatttgagacaggtaggcagacttccaggctatgttcggagcctta
ctggaccatttttgaacttttggatccacAGATCCTAAGTCTTaaatcta
gcgttaaaactcagagttaaaactctacccttcgaacctactttagagca
cttacaaatcgattgtggtttcaaaacttcctggggaatttcccatttgt
ctcaaatatttcttgaaggattgttGCAGGgcatatttaaaatgaaaaag
gaTTTTAAACACTGAAAACCAATTTGATAAATAATAAAGCAAAAGGAGAC
AATGAAGTTAATACAAATTCAGTGAGGAACTGATAACTTTGtggaaaaag
taaaaagataaaatccaaaaatagataacaaagattataaaaatgtaACC
AAACTGATAAGTGATATaaatatgttttaaatattttttaaatatttttt
caatatacattttttaaaacatgcaacaaaataaaaatataaataaaatc
caCAAAAAAGTCATCTATGACTCGTTACCCTCACCAGCAACACTATTGAC
ATTATTGTTACTATCATTCATCGCATTTATATAGACTAGTCTACAAAGTG
GACAACGGGCATTGGAATAATACTGATATTTGTTAATCATTGCAACACAA
TCAAAATGTATGAGATGCCCACATTTAGGGACAAATACAGAGCCAGGTGA
TGTATgaacactttcaaaacaaacagggcatacatcttttccactttctG
ATCGACAACTATGCGTTCCAATAACTGCTTTGTCCATACATATTCCACAA
TTATTGCAATGAATAAAATTTTCTCTACCACCAACACGACAAAACCCACA
TTGGTCacaatgaaattgttttttatcaGTGTCATCAAAAAGACGGCATT
CTAAGCATGAATACATGCCAAAAAGTATATTACACTCTTTACAATGCGTA
CCTAAAGGTTGTCTAGTTGAGCATTGAGAACAAACTAGCTCATCAATCTT
TGAGCGGTCCAGTTCATGTTGTTCAGAGTCATTGTGACAAAACCTACAAG
GATACACCTTGTTACAACATGGTGTTACAAGGAGACAGCGACGCTTGTAA
TGTGTGCATGTTTTTTCCATTTAcacttcaaaaaataatttgaaatacaa
AACATTTGAGATAATATGGAACAGATATTATGCAAAGTATATTTCATTAC
TGGTTTATTTAATTACATGGTTCAGACCGTGAT
Run BLAST on NCBI

protein sequence of TCONS_00066610-protein

>TCONS_00066610-protein ID=TCONS_00066610-protein|Name=TCONS_00066610-protein|organism=Clytia hemisphaerica|type=polypeptide|length=201bp
MEKTCTHYKRRCLLVTPCCNKVYPCRFCHNDSEQHELDRSKIDELVCSQC
STRQPLGTHCKECNILFGMYSCLECRLFDDTDKKQFHCDQCGFCRVGGRE
NFIHCNNCGICMDKAVIGTHSCRSESGKDVCPVCFESVHTSPGSVFVPKC
GHLIHFDCVAMINKYQYYSNARCPLCRLVYINAMNDSNNNVNSVAGEGNE
S
Run BLAST on NCBI

transcript from alignment at scaffold_456:341674..343456

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066610 ID=TCONS_00066610|Name=TCONS_00066610|organism=Clytia hemisphaerica|type=transcript|length=1783bp|location=Sequence derived from alignment at scaffold_456:341674..343456 (Clytia hemisphaerica)
ATCACGGTCTGAACCATGTAATTAAATAAACCAGTAATGAAATATACTTT
GCATAATATCTGTTCCATATTATCTCAAATGTTttgtatttcaaattatt
ttttgaagtgTAAATGGAAAAAACATGCACACATTACAAGCGTCGCTGTC
TCCTTGTAACACCATGTTGTAACAAGGTGTATCCTTGTAGGTTTTGTCAC
AATGACTCTGAACAACATGAACTGGACCGCTCAAAGATTGATGAGCTAGT
TTGTTCTCAATGCTCAACTAGACAACCTTTAGGTACGCATTGTAAAGAGT
GTAATATACTTTTTGGCATGTATTCATGCTTAGAATGCCGTCTTTTTGAT
GACACtgataaaaaacaatttcattgtGACCAATGTGGGTTTTGTCGTGT
TGGTGGTAGAGAAAATTTTATTCATTGCAATAATTGTGGAATATGTATGG
ACAAAGCAGTTATTGGAACGCATAGTTGTCGATCagaaagtggaaaagat
gtatgccctgtttgttttgaaagtgttcATACATCACCTGGCTCTGTATT
TGTCCCTAAATGTGGGCATCTCATACATTTTGATTGTGTTGCAATGATTA
ACAAATATCAGTATTATTCCAATGCCCGTTGTCCACTTTGTAGACTAGTC
TATATAAATGCGATGAATGATAGTAACAATAATGTCAATAGTGTTGCTGG
TGAGGGTAACGAGTCATAGATGACTTTTTTGtggattttatttatatttt
tattttgttgcatgttttaaaaaatgtatattgaaaaaatatttaaaaaa
tatttaaaacatatttATATCACTTATCAGTTTGGTtacatttttataat
ctttgttatctatttttggattttatctttttactttttccaCAAAGTTA
TCAGTTCCTCACTGAATTTGTATTAACTTCATTGTCTCCTTTTGCTTTAT
TATTTATCAAATTGGTTTTCAGTGTTTAAAAtcctttttcattttaaata
tgcCCTGCaacaatccttcaagaaatatttgagacaaatgggaaattccc
caggaagttttgaaaccacaatcgatttgtaagtgctctaaagtaggttc
gaagggtagagttttaactctgagttttaacgctagatttAAGACTTAGG
ATCTgtggatccaaaagttcaaaaatggtccagtaaggctccgaacatag
cctggaagtctgcctacctgtctcaaattgaaatattcaattaaattaaa
gagatagcccaaaatcggctttttcgcccgaactttaaatctcgaaaaac
gtcaaaataaccggaattctcaatatatttcttgaaagattgaaGGTCAT
ATTATCAGTTTGGTtacatttttataatctttgttatctatttttggatt
ttatctttttactttttccaCAAAGTTATCAGTTCCTCACTGAATTTGTA
TTAACTTCATTGTCTCCTTTTGCTTTATTATTTATCAAATTGATTTTCAG
TGTTTAAAAtcctttttcattttaaatatgcCAACTTTTGAGcactttta
aaagtttcttttttaaattggtttttattatatttgatttttaatgCTGA
TTTGTAAATTGTCTTCATAATGATTATTAAGTGTGAATATGTTcattcat
gtaaaaaaatttttaagttGTTACAAAGGGGAATATAAATGTAGTACAAT
GTGAgagttgttatgattttttttctataaaataaaGCATTAATGTGTTG
GCTTGCCCTCAAACTGGGGAGGCAGATTGAAAG

Coding sequence (CDS) from alignment at scaffold_456:341674..343456

>TCONS_00066610 ID=TCONS_00066610|Name=TCONS_00066610|organism=Clytia hemisphaerica|type=CDS|length=606bp|location=Sequence derived from alignment at scaffold_456:341674..343456 (Clytia hemisphaerica)
ATGGAAAAAACATGCACACATTACAAGCGTCGCTGTCTCCTTGTAACACC
ATGTTGTAACAAGGTGTATCCTTGTAGGTTTTGTCACAATGACTCTGAAC
AACATGAACTGGACCGCTCAAAGATTGATGAGCTAGTTTGTTCTCAATGC
TCAACTAGACAACCTTTAGGTACGCATTGTAAAGAGTGTAATATACTTTT
TGGCATGTATTCATGCTTAGAATGCCGTCTTTTTGATGACACtgataaaa
aacaatttcattgtGACCAATGTGGGTTTTGTCGTGTTGGTGGTAGAGAA
AATTTTATTCATTGCAATAATTGTGGAATATGTATGGACAAAGCAGTTAT
TGGAACGCATAGTTGTCGATCagaaagtggaaaagatgtatgccctgttt
gttttgaaagtgttcATACATCACCTGGCTCTGTATTTGTCCCTAAATGT
GGGCATCTCATACATTTTGATTGTGTTGCAATGATTAACAAATATCAGTA
TTATTCCAATGCCCGTTGTCCACTTTGTAGACTAGTCTATATAAATGCGA
TGAATGATAGTAACAATAATGTCAATAGTGTTGCTGGTGAGGGTAACGAG
TCATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041659XLOC_041659Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066610-proteinTCONS_00066610-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066610-exon-scaffold_456-1491911889:341674..343456TCONS_00066610-exon-scaffold_456-1491911889:341674..343456Clytia hemisphaericaexon
TCONS_00066610-exon-scaffold_456-1510915933:341674..343456TCONS_00066610-exon-scaffold_456-1510915933:341674..343456Clytia hemisphaericaexon
TCONS_00066610-exon-scaffold_456-1575043694:341674..343456TCONS_00066610-exon-scaffold_456-1575043694:341674..343456Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:341674..343456 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.63916	2.26788	16.575	19.7807	7.99247	5.67897	8.40446	9.3458	7.66991	7.1267	8.57761	6.6334	6.00841	4.79049	3.60701	4.35156	5.40212	6.11714	6.2028	6.38966	7.05936	6.62497	4.61855	4.90244	5.25716	6.70295	6.53023	4.45503	3.50438	3.0963
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR008913Znf_CHY
IPR013083Znf_RING/FYVE/PHD
IPR017921Znf_CTCHY
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding
Blast
[Close]
BLAST of TCONS_00066610 vs. Swiss-Prot (Human)
Match: ZN363 (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 2.021e-43
Identity = 79/175 (45.14%), Postives = 104/175 (59.43%), Query Frame = -3 
Query: 1143 EKTCTHYKRRCLLVTPCCNKVYPCRFCHNDSEQHELDRSKIDELVCSQCSTRQPLGTHCKECNILFGMYSCLECRLFDDTDKKQFHCDQCGFCRVGGRENFIHCNNCGICMDKAVIGTHSCRSESGKDVCPVCFESVHTSPGSVFVPKCGHLIHFDCVAMINKYQYYSNARCPLC 1667
            ++ C HY R CLL  PCC+K+Y CR CH+++E H+LDR K+ E+ C  C   Q     C+EC+ LFG Y C  C LF D DKKQ+HC+ CG CR+G +E+F HC  C +C+   + G H C     +  CP+C E +HTS     V  CGHL+H  C   + K  Y    RCPLC
Sbjct:   17 QRGCEHYDRGCLLKAPCCDKLYTCRLCHDNNEDHQLDRFKVKEVQCINCEKIQHAQQTCEECSTLFGEYYCDICHLF-DKDKKQYHCENCGICRIGPKEDFFHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGY----RCPLC 186
The following BLAST results are available for this feature:
BLAST of TCONS_00066610 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ZN3632.021e-4345.14RING finger and CHY zinc finger domain-containing ... [more]
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