TCONS_00066609 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066609
Unique NameTCONS_00066609
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length552

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066609 ID=TCONS_00066609|Name=TCONS_00066609|organism=Clytia hemisphaerica|type=transcript|length=552bp
TTTTCCAGAtggaattgaaaaaataaaaagctgAAACACCAGCACGAATA
CTGACTAGGACGAATTCTGGAAGTTTGTTTTGGTTGAACTTGAAGTCATT
CCTTATAGTTAAGTACTTTGTGTTTTACTTCAAATTTGGTTTGTGAACTA
TAATAAAAAGTAATTCGGCGCCCCATAAGTACAGCCCCCTCTATCTGATT
CACACGCCAGGGGCCAAGTCTGTAAGAAATTCCATGCTCCAATCCAATAT
GATGAGTGAATGAAtgagatttcttttttctaaactttAACTAGAAAAAT
TTACAAGATCAACCTGATGAAACAACAACCTTTAAGAGGTTTACAAATAT
GGAAGACAAATCCCAATCTCGAAAGCAAAAAATCTAAGGGGTACTTAGAA
AAACAGAGAATATTTAAGGGGATTAGGAAATAAGGGCACAGTACAAATGG
AATTCCAAATTGAGGGGGGAGAAATGGATAAGGGATAATTTGCTGTTAAG
GAGGGGGGGACTGGAAAACATGAATAAAACCATGATTGTCAGTCAcagaa
at
Run BLAST on NCBI

transcript from alignment at scaffold_456:334995..335546

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066609 ID=TCONS_00066609|Name=TCONS_00066609|organism=Clytia hemisphaerica|type=transcript|length=552bp|location=Sequence derived from alignment at scaffold_456:334995..335546 (Clytia hemisphaerica)
atttctgTGACTGACAATCATGGTTTTATTCATGTTTTCCAGTCCCCCCC
TCCTTAACAGCAAATTATCCCTTATCCATTTCTCCCCCCTCAATTTGGAA
TTCCATTTGTACTGTGCCCTTATTTCCTAATCCCCTTAAATATTCTCTGT
TTTTCTAAGTACCCCTTAGATTTTTTGCTTTCGAGATTGGGATTTGTCTT
CCATATTTGTAAACCTCTTAAAGGTTGTTGTTTCATCAGGTTGATCTTGT
AAATTTTTCTAGTTaaagtttagaaaaaagaaatctcaTTCATTCACTCA
TCATATTGGATTGGAGCATGGAATTTCTTACAGACTTGGCCCCTGGCGTG
TGAATCAGATAGAGGGGGCTGTACTTATGGGGCGCCGAATTACTTTTTAT
TATAGTTCACAAACCAAATTTGAAGTAAAACACAAAGTACTTAACTATAA
GGAATGACTTCAAGTTCAACCAAAACAAACTTCCAGAATTCGTCCTAGTC
AGTATTCGTGCTGGTGTTTcagctttttattttttcaattccaTCTGGAA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041658XLOC_041658Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066609-exon-scaffold_456-1491911889:334995..335546TCONS_00066609-exon-scaffold_456-1491911889:334995..335546Clytia hemisphaericaexon
TCONS_00066609-exon-scaffold_456-1510915933:334995..335546TCONS_00066609-exon-scaffold_456-1510915933:334995..335546Clytia hemisphaericaexon
TCONS_00066609-exon-scaffold_456-1575043694:334995..335546TCONS_00066609-exon-scaffold_456-1575043694:334995..335546Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:334995..335546 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.310301	0.605185	0.936903	0.458307	0.418458	1.10224	0.664901	1.24495	0.522969	0.323891	0.628753	0.482204	0.206371	0.571517	0.411131	0.819384	1.39765	0.557102	0	0.920457	0.700039	1.46338	0.830165	0.10782	0.888417	0.495557	0.850968	0.454088	0.803623	0.233933
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066609 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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