TCONS_00066603 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066603
Unique NameTCONS_00066603
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066603 ID=TCONS_00066603|Name=TCONS_00066603|organism=Clytia hemisphaerica|type=transcript|length=406bp
aaaaaattgactttttatcGGAAATCCtggaatttaaaaaaacattttac
ctcAGAATTCCATTTTCGTCTACCCCAATGGTGCTCCAGAGACGTCCGGA
GCAAAAAGGGCTGTTTTTCGTGCTCTGGAACACCGGAAGATTCCGGAGCA
CTTCCAGTGTTTCGGAACAAGATATCCGGATATAATTACAATAGGGCTCG
CTGTGCTAATCATATGAAAACTAACTGCGCATGTGcgtattttaaaaaaa
tcagccGACACATGGTAGTGAAACCTcacgttttttaatttttttgaatt
ttcgacCAGTGATGCTTTCGAAGACAGAGTGATCAATATATATGTAATCA
ACAATGTTTTCAACTCAAGTGTTGCGCTTAAtataatttcttgtttttta
cCAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_456:302644..303049

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066603 ID=TCONS_00066603|Name=TCONS_00066603|organism=Clytia hemisphaerica|type=transcript|length=406bp|location=Sequence derived from alignment at scaffold_456:302644..303049 (Clytia hemisphaerica)
CTTTGgtaaaaaacaagaaattataTTAAGCGCAACACTTGAGTTGAAAA
CATTGTTGATTACATATATATTGATCACTCTGTCTTCGAAAGCATCACTG
gtcgaaaattcaaaaaaattaaaaaacgtgAGGTTTCACTACCATGTGTC
ggctgatttttttaaaatacgCACATGCGCAGTTAGTTTTCATATGATTA
GCACAGCGAGCCCTATTGTAATTATATCCGGATATCTTGTTCCGAAACAC
TGGAAGTGCTCCGGAATCTTCCGGTGTTCCAGAGCACGAAAAACAGCCCT
TTTTGCTCCGGACGTCTCTGGAGCACCATTGGGGTAGACGAAAATGGAAT
TCTgaggtaaaatgtttttttaaattccaGGATTTCCgataaaaagtcaa
tttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041652XLOC_041652Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066603-exon-scaffold_456-1491911889:302644..303049TCONS_00066603-exon-scaffold_456-1491911889:302644..303049Clytia hemisphaericaexon
TCONS_00066603-exon-scaffold_456-1510915933:302644..303049TCONS_00066603-exon-scaffold_456-1510915933:302644..303049Clytia hemisphaericaexon
TCONS_00066603-exon-scaffold_456-1575043694:302644..303049TCONS_00066603-exon-scaffold_456-1575043694:302644..303049Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:302644..303049 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.36018	0.175616	0.203907	0.199491	0.242862	0	0	0	0.151758	0	0.364911	0.359817	0.838406	0.497539	0.92035	0.877934	0	0	0.574319	1.4023	0.174121	0.254791	0.206488	0	0	0.172564	0.987757	0.790621	1.3992	0.610956
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066603 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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