TCONS_00066600 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066600
Unique NameTCONS_00066600
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length246

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066600 ID=TCONS_00066600|Name=TCONS_00066600|organism=Clytia hemisphaerica|type=transcript|length=246bp
GCCAGTGGTAATTTATGAAGTGGATAAAACGATCGATAGAGAGCTTGAGT
ACCATGAATGTAATGTGTCCATGAGGTGTACAACGAAGGTTTACGTCGTT
GGCGAAAGTTTTGAATCCGATGACACCATCCCATTCGTTGAAATTTTAAA
TCTCTTACAACCATTCATCGAAGACAACACGTTTATAACCAGGTTCAAAA
TCTTGGCAAGTAACTACATATTTGATCACGTGAACCAATTTAAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_456:222800..223045

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066600 ID=TCONS_00066600|Name=TCONS_00066600|organism=Clytia hemisphaerica|type=transcript|length=246bp|location=Sequence derived from alignment at scaffold_456:222800..223045 (Clytia hemisphaerica)
CTTTTAAATTGGTTCACGTGATCAAATATGTAGTTACTTGCCAAGATTTT
GAACCTGGTTATAAACGTGTTGTCTTCGATGAATGGTTGTAAGAGATTTA
AAATTTCAACGAATGGGATGGTGTCATCGGATTCAAAACTTTCGCCAACG
ACGTAAACCTTCGTTGTACACCTCATGGACACATTACATTCATGGTACTC
AAGCTCTCTATCGATCGTTTTATCCACTTCATAAATTACCACTGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041649XLOC_041649Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066600-exon-scaffold_456-1491911889:222800..223045TCONS_00066600-exon-scaffold_456-1491911889:222800..223045Clytia hemisphaericaexon
TCONS_00066600-exon-scaffold_456-1510915933:222800..223045TCONS_00066600-exon-scaffold_456-1510915933:222800..223045Clytia hemisphaericaexon
TCONS_00066600-exon-scaffold_456-1575043694:222800..223045TCONS_00066600-exon-scaffold_456-1575043694:222800..223045Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:222800..223045 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.10167	0	0	0	0.688408	0	0	0	0	0	1.85551	1.49343	7.97242	1.88572	0	0.908729	1.5797	5.77892	0	2.55471	0	0	3.3605	1.19547	1.81345	0.923808
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066600 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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