TCONS_00066597 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066597
Unique NameTCONS_00066597
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length551

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066597 ID=TCONS_00066597|Name=TCONS_00066597|organism=Clytia hemisphaerica|type=transcript|length=551bp
TTGTTAAATCGTTAAATATAAaggttttatattttcttgtatTTAGAAAT
TAAGTGGTGTGCATGCTCTGGTGCGAAAATTGATGTTAAGCTAGCTCCAT
CACAAAATAATATCTTCGATAGTAAAAAGTTTTAGAGAAAATTTATAAAT
CTGTACTCTCTAAGGGTGTATAAAGAATAGCTATAATTCGTTGCTTGTGT
GTGTAAGATTTGGTGTGGTGTTTTGTTATGTGAGCAATTAATtttaatat
aatattttcatcaataaagtggagtctctttaactcgaacctctataact
cgaatatcaGTTGACAATATGCCTTATATGAACCTTACATAACTCGAATT
TTACTCGAACAGATTTATGTCCCCCGTGCGTGTTCAAGTtacggagactc
cactgtatttaaATTAAGTTCCTTGTTGTTGGTTCACCTTCCACCTTCCT
TCAAAATCATTATGAACGGTTGGTAAGAAAAACAGCAACACTAACGCCCA
AAGCAGCAAGGGCGCCAACCCAACCAAATCCATACGCCCATCCGTAAtcc
a
Run BLAST on NCBI

transcript from alignment at scaffold_456:140810..141360

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066597 ID=TCONS_00066597|Name=TCONS_00066597|organism=Clytia hemisphaerica|type=transcript|length=551bp|location=Sequence derived from alignment at scaffold_456:140810..141360 (Clytia hemisphaerica)
tggaTTACGGATGGGCGTATGGATTTGGTTGGGTTGGCGCCCTTGCTGCT
TTGGGCGTTAGTGTTGCTGTTTTTCTTACCAACCGTTCATAATGATTTTG
AAGGAAGGTGGAAGGTGAACCAACAACAAGGAACTTAATttaaatacagt
ggagtctccgtaACTTGAACACGCACGGGGGACATAAATCTGTTCGAGTA
AAATTCGAGTTATGTAAGGTTCATATAAGGCATATTGTCAACtgatattc
gagttatagaggttcgagttaaagagactccactttattgatgaaaatat
tatattaaaATTAATTGCTCACATAACAAAACACCACACCAAATCTTACA
CACACAAGCAACGAATTATAGCTATTCTTTATACACCCTTAGAGAGTACA
GATTTATAAATTTTCTCTAAAACTTTTTACTATCGAAGATATTATTTTGT
GATGGAGCTAGCTTAACATCAATTTTCGCACCAGAGCATGCACACCACTT
AATTTCTAAatacaagaaaatataaaacctTTATATTTAACGATTTAACA
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041646XLOC_041646Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066597-exon-scaffold_456-1491911889:140810..141360TCONS_00066597-exon-scaffold_456-1491911889:140810..141360Clytia hemisphaericaexon
TCONS_00066597-exon-scaffold_456-1510915933:140810..141360TCONS_00066597-exon-scaffold_456-1510915933:140810..141360Clytia hemisphaericaexon
TCONS_00066597-exon-scaffold_456-1575043694:140810..141360TCONS_00066597-exon-scaffold_456-1575043694:140810..141360Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:140810..141360 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.103736	0	0.117799	0.351933	0	0	0.133369	0	0.174833	0.216955	0	0	28.472	29.4725	0.11781	0.0632139	0.233623	0.159637	80.1178	60.8565	0.101277	0	0.118942	0.108348	0.446161	0	0.142243	0.151805	0.115139	0.117308
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066597 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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