TCONS_00066585 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00066585
Unique Name	TCONS_00066585
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1188

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_456:759618..764646-

transcript sequence

>TCONS_00066585 ID=TCONS_00066585|Name=TCONS_00066585|organism=Clytia hemisphaerica|type=transcript|length=1188bp
CAGCAATAATTTATCATTAGCAATGAAGACTTTCTTTGCTGTCTTATTGA
TATTGGCTCTCTTGGCCATTGCTGAAACAAGATGGCATGGGCACCACAAA
GATAGTCAAATAAACCACGATAAAAATGATTGGGATGTTTTTCTGTTGGT
CACCCAATGGCCTTTCTCCGcatgtgaaaaagaaaatGTGACTGGTTACC
ACGAATGTGTCATCCCAAAATACGTTGACTCTTGGATTCTCCACGGTTTA
TGGCCATCATGCAGCAATGGTGGTTATAACCCACAATACTGTTCGCATCA
AAAATTCGATTACAATAAAATCAAGGATTTAAAAGATCGCATGATGAAGT
ATTGGCCAAACTTGTTTGTCAATtctgataaatatgatttttgGAAACAC
GAATTTGAAAAGCATGGTACATGTGCAGAAAATGTTGAAGGGTTTGAAAC
AGAGCATGGTTTTTTCAAAGTTGCGTTGGATTTACGTGACAAATATGAGA
CAGGAAGAATTTTATCAGATCATGGAATCTCACCACGTGATGCACCATAT
AAGggAGCTGATGTCAAGCATGCATTGAACAAAGGATTGAACGCTAAAGG
GTGTGCCGCCTGTAAAAGAGTCAAAGGTATTGATGGATATGTATTGATGA
GTACAAGTGTTTGTCTCAACAAATCCTTACAATTGGTCAACTGTCCTTAT
TGTAGAGGAGAATGTTATGATGACGATATTGTTTATTACCAACCCATACA
CTGAAGTATCTTTCTTTCGAATTTAttgtcattagttttttttatgattt
ttaataatttttattaaaatttagcCACAAACGCTCttaaaaaaggccaa
aaagtcgCTCACATGGGAAAAATTTCTTATGATATCAAATCTTATTGGAA
TTAGCATGAATGAAGGTTGAAAGCAATGCAACAGGATTGTAAATCCTAGA
CTTTAAgtttaaagttatttttaatatttttcaaagccaaatATCTTAGG
CGCGGTCGTTAAGGATACTCTacgtttttcaggtttttcgAAGTGCATCG
TAAAGGGTGTATGTAAAAAGGGAGAAAAACAAAGCTTTCGgattaaattt
tggaaaatgcttttttcatattttcataaatcaacatgttttaaaagaaa
atatataaaaacctTATGCAACCTCGTCCCAAAATAAG

Run BLAST on NCBI

transcript from alignment at scaffold_456:759618..764646-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00066585 ID=TCONS_00066585|Name=TCONS_00066585|organism=Clytia hemisphaerica|type=transcript|length=5029bp|location=Sequence derived from alignment at scaffold_456:759618..764646- (Clytia hemisphaerica)
CAGCAATAATTTATCATTAGCAATGAAGACTTTCTTTGCTGTCTTATTGA
TATTGGCTCTCTTGGCCATTGCTGAAACAAGATGGTAAGTGTTGTGTCTT
GTTTCCGTTTTGCTCCCTTCTCTCACAGACCCACTGAAAACCCTTCCCAC
TGGAAAAATTGGTCGAAATATCGTCCCCAGTGGAAAGTTATACTCTTATT
TTTGTCCCCACTAAAAATGAACAGATAAGCAAATCCTGACTACAAAAAAT
TGTGATATTTTTTTCATACCCACTGAATTGTTATGCTCAAAAAAAAAAAA
ATTCAAATCCCCAGCCATAAAAACATGGGAATATCAATCCCCATCGAGTT
TTTGTCCGTTATTTTTACCCCCATTGGCTGATAAAATCCCACTGGGTCTG
TGAGAAGGGGGTATTTCTAGTAACCCGCCAGTTATTTTTTGTCAGTTGCA
CCTAAACTTTAATGGCAAATAACTGGAAATTATATGCAATAACCATCACT
CTTATTTGGGCTGAGTTTAGACTGGCAGTCGTTTATAATCTTATGGGCAG
CAAATTTGGTGCTATACGATAATAGTGGCAGGATAATCAGTTTGTATATT
ACGATTTGACCCTTCCATTATCTTTGGCTTATTTTCTACTATGCCTGAAT
GAAGAGACGACAAGTTGAGTTGTATGTTTGTGGGTTTACTTTTTATCTGA
ACATATATTTATTTGTTGCCCAAAAGTCGGGTACAATTGTTCCTCGATCT
CGACCATTTGTTCTTACTGTTGAACCTATATAACTCAAATTTAACCTTAA
CTCGAACAAATCTTATGGCCCCTTCGGCTAATAATGCCTGAGAAATATTA
TTCNATATGTCTGAATGAAGAGACGACAAGTTGAGTTGTATGTTGTGGGT
TTACTTTTTATCTGAACATATATTTATTTGTTGCCCAAAAGTCGGGTGCA
TTTTTCCCTCGATCTCGACCATTTGTTTTTACTGTTGAACCTATATCACT
CAAATGTAACCTTAACTCGAACAAGTCTTATGGCCCCTTCAGTTAATAGT
GCTTTAAATACATTAATCTACAACTCGAAATTTCCTTAGCTCAAAACAAA
TTTTAGCCTCCCTTGTTTGTTTAAGCTATGGAGACTCCACTGTATTTATC
TTACAGGCATGGGCACCACAAAGATAGTCAAATAAACCACGATAAAAATG
ATTGGGATGTTTTTCTGTTGGTCACCCAATGGCCTTTCTCCGCATGTGAA
AAAGAAAATGTAAGCACTTTATAACACCCGCTTCTTCCTAATGGATATTG
TAGCCAAGCTAAAAATCTTCATGTATCCTCTTTTTAAAAATCTGAGCAAC
CCGTTTCAATTTGTGGCATTTTTTTCAAATTTGTGTAATGTTAAGAATTA
AATCCTCTTTCTTACACCCCCTTCTCTGGATCTATACCAAAATCTCCCTT
ATATTATTTGACTGGGCTCTATATATCCACATTGTATCCATTCTTTCCAT
TTTTGTAAAACCTTATGTTTTGATTTTGAGAGAAAGAAATGTAAAAAAAG
TCTCTCTAAGGGTAGGACTTTTTTCGAAAGTGGAAGAAAATTTTTGTAAA
AAGTCTAACCTTTTCAGCAAAAATCAGTTTCTCTGAGGGTCAGGGTTCGG
AGGTCCGACACGCACACATACCCAAGCATCTCTCAACACTAGAACCCCCT
CCCCCGGGTTGTACTGTCTACTTATTTTATGATCACTTTAAGGTGACTGG
TTACCACGAATGTGTCATCCCAAAATACGTTGACTCTTGGATTCTCCACG
GTTTATGGCCATCATGCAGCAATGGTGGTTATAACCCACAATACTGTTCG
CATCAAAAATTCGATTACAATAAAATCAAGGTAATTTGCAAATCATTTAG
ACAGTGCATTCTCTACTACAGGATTTATCTCCGTAATCATAAATTTTCAA
TAACNTAGATAAATTAGACAGTGCATCCACACTACTGCAGGATTTGTCCC
ATATTTTGTAATCATAAATTTTCAAGAACTTTCAGAAAAACCTGGCTTAA
TTTCAATTGAGTCCCAAATGGAATTCGTCTTTTCATACTCAGGAGTTTCT
TTACTTTTATACTTGCCTACATTCTATTATACCCATTGGTTTCCTTAAAA
CTTTCGGCTTTTGGTTTGAAAAAGTCGCGGAAAATCACGAAAATAATTTC
GCAAATCGTTTTGTAAAAGCTTTTACCAAGCGAAAATCTTGCTTAGTTTA
TCATATTATCATTTGCTTTTTAGGATTTAAAAGATCGCATGATGAAGTAT
TGGCCAAACTTGTTTGTCAATTCTGATAAATATGATTTTTGGTGAGTTCA
CAAAAAAATATAAGGATAGTAGAAAATTCAAGGTGGTTAAAAAAGACTGG
TGGCTTGAATCTTTGTAGAAAAACTAAGAAAATAGTATTATTCCATTATA
AAAGATTTCTACTTGGATAATTGCCTTATAAAGAAATTGAAAACATATCC
AACCTGAGCAGATTCCCTTAAGCCTTAGCCTTCAGGTTGAATACGTGCCA
TGCATGAAGTAACTAGAATTCGTTCGGAGATTAATCTAAGTACTTCCACA
TACTCATACACTGTGATACTGACGGCATCTCTTCTTTCTTCGCCTCCTTA
GGAAACACGAATTTGAAAAGCATGGTACATGTGCAGAAAATGTTGAAGGG
TTTGAAACAGAGCATGGTTTTTTCAAAGTTGCGTTGGATTTACGTGACAA
ATATGAGACAGGAAGGTATGTTGAAGTTAGGATATATACTTTAACGGGGT
AAAATTTCACGGAGATCAAATTTTACGGATTTTGTGGATTTGGGTGTCAT
CCGCGAAATCAAGTCCTGATGGAAATTCAGTAAGGTCTTATTCGTGAAAT
ATTTTCAAATAAAACATAAGAAAATGTCAAAAAATCTAATTTTGGAATGT
TTACTAGCATCAAAGAAGCGCTAACTATATATCAACAACCAACATCCATG
GTTTGACAGTAAAAGGCACAAAATCGTGAACATATTGTCAGTGCCATCCG
CGGAATTAAGTCCCCACGAAATCTTAAAATTTTGCGGATGAGCTCAACCG
CGTAATTCAATCTCCGCAACGTTTTATTCCATTAAAGTAAGTTTCTTTGT
AATTACAATCAGATGTCAAAGTAAATGTTGAAATTCAGAGGCCCCCAGCA
GAGTCTTTAATCACGCTATCACGCCTAAAAATATTCTCTCGTCGTGTCAT
CACAAAAAAAGGCCAAATGGCGCCCGACCACCTCAATAATCATTGTTTCT
GAATCAAAAATAGATTAGAAATACTTTTCTTCATCTTCGATCCTAGGTTT
TCTAGGTTTCCCGATTTCACTGATTAATTTAAAGATTTATAAAGATTTTT
TAACGTGTTTTTTTGTGATAGAATTTTATCAGATCATGGAATCTCACCAC
GTGATGCACCATATAAGGTAATTAACAAACTCAAACCCAAGCTCTTTAGC
ACAATTTTTTTATTCTCAAGAAAGGTGTTTCTATCATGTTCATCAGTAAA
GTAGGGCTTCTGGGTACGAGATTGGGTGATTAAATAAAGTTAGTTAGCAC
AAAACCTTAAAATTGCCTATGAAACACCGCGGAGGAACATTAACACCCGT
TATGAATTCAGCTAAAGTTTAAGTATATATTTACTCATTTACTTAAAACA
AGAAAGCCTAAGCGGCGTAAAGGCCCAGCTGTGTTGCCACTGTCAGCATA
TTTTTCTTCTGCAGAATCGCCATACAACATGAACGAATTTTTTCAATGTA
TAGACTCGAGTCGGGCGAGCAATAAAGATTTGATTACTTTAAACTATTTT
ATACTAGTAATTCAGAAAGAAAGATTTGACCATATAAGCTGGAGGTATTA
ATGATATGTGTTTTTTTCTTACGCATGCGCACAATAGAAAGTCAGGTAGT
TCGATTTTAAGCTGGAATCGTCGATTGATAATTGCGCACATTAAAGGCCC
CGACAAAGTCAATTTTTTTCGACCAGTTGTGTTTTAAAGGCCCATTGCGC
TGGCCCATGGGCCAAATATCTGAAGCATGAAATCAAATGATATTTATGTT
TTTTTATAGGGAGCTGATGTCAAGCATGCATTGAACAAAGGATTGAACGC
TAAAGGGTGTGCCGCCTGTAAAAGAGTCAAAGTAAGTCGATTTATACGCC
CCTGTCCCACTGTCCCAGTGGAATATCCTTTCTATAGAAATTCAACATGG
ATAGAAATTCTAATGTTCCAAGCTCAAAATTCCAGTAGGGATAGTTTAAG
TGTGCCAATCTTTATATTGAAATTTCGAAAGGGGGTGAAGTCGAATTCAA
ATTGTAGGGTATTCTTTCCCACGCCGGGGACGGAATTTCAACCAAATTTT
TCAGAAGGTTATTAGTGATGCAAATCCACACTATAATCCCAACATTCTTA
ACTTTTTTTCGTTTAGGGTATTGATGGATATGTATTGATGAGTACAAGTG
TTTGTCTCAACAAATCCTTACAATTGGTCAACTGTCCTTATTGTAGAGGA
GAATGTTATGATGACGATATTGTTTATTACCAACCCATACACTGAAGTAT
CTTTCTTTCGAATTTATTGTCATTAGTTTTTTTTATGATTTTTAATAATT
TTTATTAAAATTTAGCCACAAACGCTCTTAAAAAAGGCCAAAAAGTCGCT
CACATGGGAAAAATTTCTTATGATATCAAATCTTATTGGAATTAGCATGA
ATGAAGGTTGAAAGCAATGCAACAGGATTGTAAATCCTAGACTTTAAGTT
TAAAGTTATTTTTAATATTTTTCAAAGCCAAATATCTTAGGCGCGGTCGT
TAAGGATACTCTACGTTTTTCAGGTTTTTCGAAGTGCATCGTAAAGGGTG
TATGTAAAAAGGGAGAAAAACAAAGCTTTCGGATTAAATTTTGGAAAATG
CTTTTTTCATATTTTCATAAATCAACATGTTTTAAAAGAAAATATATAAA
AACCTTATGCAACCTCGTCCCAAAATAAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_041639	XLOC_041639	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_456	supercontig	scaffold_456:759618..764646 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68384	1.44888	3.4056	2.12757	0.09774	0.103445	0.883638	1.0032	2.23141	1.24486	2.42975	1.42395	0.968993	0.650764	0.322898	0.220829	8.96103	6.24255	0	0	70.6292	69.1991	22.8054	25.7586	21.4118	15.245	7.68568	7.04523	105.174	84.5873

Blast

[Close]

BLAST of TCONS_00066585 vs. Swiss-Prot (Human)
Match: RNT2 (Ribonuclease T2 OS=Homo sapiens GN=RNASET2 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 6.817e-23
Identity = 63/197 (31.98%), Postives = 95/197 (48.22%), Query Frame = 2

Query:  116 HDKNDWDVFLLVTQWPFSACEKENVTGYHECVIPKYVDSWILHGLWPSCSNGGYNPQYCSHQ-KFDYNKIKDLKDRMMKYWPNLFVN-SDKYDFWKHEFEKHGTCAENVEGFETEHGFFKVALDLRDKYETGRILSDHGISPRDAPYKGADVKHALNKGLNAKGCAAC-KRVKGIDGYVLMSTSVCLNKS-LQLVNC 694
             D ++W   ++V  WP + CEK      ++C  P   D W +HGLWP  S G      C+    F+  +IKDL   M  YWP++  +  ++  FWKHE+EKHGTCA  V+   ++  +F  +L+L  + +   +L   GI P    Y+ AD K AL +         C    +  +   +    +CL K   QL NC
Sbjct:   29 RDNHEWKKLIMVQHWPETVCEKIQ----NDCRDPP--DYWTIHGLWPDKSEG------CNRSWPFNLEEIKDLLPEMRAYWPDVIHSFPNRSRFWKHEWEKHGTCAAQVDALNSQKKYFGRSLELYRELDLNSVLLKLGIKPSINYYQVADFKDALARVYGVIPKIQCLPPSQDEEVQTIGQIELCLTKQDQQLQNC 213

The following BLAST results are available for this feature:

BLAST of TCONS_00066585 vs. Swiss-Prot (Human)

BLAST of TCONS_00066585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RNT2	6.817e-23	31.98	Ribonuclease T2 OS=Homo sapiens GN=RNASET2 PE=1 SV...	[more]

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TCONS_00066585 (transcript) - C. hemisphaerica