TCONS_00066585 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066585
Unique NameTCONS_00066585
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1188

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066585 ID=TCONS_00066585|Name=TCONS_00066585|organism=Clytia hemisphaerica|type=transcript|length=1188bp
CAGCAATAATTTATCATTAGCAATGAAGACTTTCTTTGCTGTCTTATTGA
TATTGGCTCTCTTGGCCATTGCTGAAACAAGATGGCATGGGCACCACAAA
GATAGTCAAATAAACCACGATAAAAATGATTGGGATGTTTTTCTGTTGGT
CACCCAATGGCCTTTCTCCGcatgtgaaaaagaaaatGTGACTGGTTACC
ACGAATGTGTCATCCCAAAATACGTTGACTCTTGGATTCTCCACGGTTTA
TGGCCATCATGCAGCAATGGTGGTTATAACCCACAATACTGTTCGCATCA
AAAATTCGATTACAATAAAATCAAGGATTTAAAAGATCGCATGATGAAGT
ATTGGCCAAACTTGTTTGTCAATtctgataaatatgatttttgGAAACAC
GAATTTGAAAAGCATGGTACATGTGCAGAAAATGTTGAAGGGTTTGAAAC
AGAGCATGGTTTTTTCAAAGTTGCGTTGGATTTACGTGACAAATATGAGA
CAGGAAGAATTTTATCAGATCATGGAATCTCACCACGTGATGCACCATAT
AAGggAGCTGATGTCAAGCATGCATTGAACAAAGGATTGAACGCTAAAGG
GTGTGCCGCCTGTAAAAGAGTCAAAGGTATTGATGGATATGTATTGATGA
GTACAAGTGTTTGTCTCAACAAATCCTTACAATTGGTCAACTGTCCTTAT
TGTAGAGGAGAATGTTATGATGACGATATTGTTTATTACCAACCCATACA
CTGAAGTATCTTTCTTTCGAATTTAttgtcattagttttttttatgattt
ttaataatttttattaaaatttagcCACAAACGCTCttaaaaaaggccaa
aaagtcgCTCACATGGGAAAAATTTCTTATGATATCAAATCTTATTGGAA
TTAGCATGAATGAAGGTTGAAAGCAATGCAACAGGATTGTAAATCCTAGA
CTTTAAgtttaaagttatttttaatatttttcaaagccaaatATCTTAGG
CGCGGTCGTTAAGGATACTCTacgtttttcaggtttttcgAAGTGCATCG
TAAAGGGTGTATGTAAAAAGGGAGAAAAACAAAGCTTTCGgattaaattt
tggaaaatgcttttttcatattttcataaatcaacatgttttaaaagaaa
atatataaaaacctTATGCAACCTCGTCCCAAAATAAG
Run BLAST on NCBI

transcript from alignment at scaffold_456:759618..764646-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066585 ID=TCONS_00066585|Name=TCONS_00066585|organism=Clytia hemisphaerica|type=transcript|length=5029bp|location=Sequence derived from alignment at scaffold_456:759618..764646- (Clytia hemisphaerica)
CAGCAATAATTTATCATTAGCAATGAAGACTTTCTTTGCTGTCTTATTGA
TATTGGCTCTCTTGGCCATTGCTGAAACAAGATGGTAAGTGTTGTGTCTT
GTTTCCGTTTTGCTCCCTTCTCTCACAGACCCACTGAAAACCCTTCCCAC
TGGAAAAATTGGTCGAAATATCGTCCCCAGTGGAAAGTTATACTCTTATT
TTTGTCCCCACTAAAAATGAACAGATAAGCAAATCCTGACTACAAAAAAT
TGTGATATTTTTTTCATACCCACTGAATTGTTATGCTCAAAAAAAAAAAA
ATTCAAATCCCCAGCCATAAAAACATGGGAATATCAATCCCCATCGAGTT
TTTGTCCGTTATTTTTACCCCCATTGGCTGATAAAATCCCACTGGGTCTG
TGAGAAGGGGGTATTTCTAGTAACCCGCCAGTTATTTTTTGTCAGTTGCA
CCTAAACTTTAATGGCAAATAACTGGAAATTATATGCAATAACCATCACT
CTTATTTGGGCTGAGTTTAGACTGGCAGTCGTTTATAATCTTATGGGCAG
CAAATTTGGTGCTATACGATAATAGTGGCAGGATAATCAGTTTGTATATT
ACGATTTGACCCTTCCATTATCTTTGGCTTATTTTCTACTATGCCTGAAT
GAAGAGACGACAAGTTGAGTTGTATGTTTGTGGGTTTACTTTTTATCTGA
ACATATATTTATTTGTTGCCCAAAAGTCGGGTACAATTGTTCCTCGATCT
CGACCATTTGTTCTTACTGTTGAACCTATATAACTCAAATTTAACCTTAA
CTCGAACAAATCTTATGGCCCCTTCGGCTAATAATGCCTGAGAAATATTA
TTCNATATGTCTGAATGAAGAGACGACAAGTTGAGTTGTATGTTGTGGGT
TTACTTTTTATCTGAACATATATTTATTTGTTGCCCAAAAGTCGGGTGCA
TTTTTCCCTCGATCTCGACCATTTGTTTTTACTGTTGAACCTATATCACT
CAAATGTAACCTTAACTCGAACAAGTCTTATGGCCCCTTCAGTTAATAGT
GCTTTAAATACATTAATCTACAACTCGAAATTTCCTTAGCTCAAAACAAA
TTTTAGCCTCCCTTGTTTGTTTAAGCTATGGAGACTCCACTGTATTTATC
TTACAGGCATGGGCACCACAAAGATAGTCAAATAAACCACGATAAAAATG
ATTGGGATGTTTTTCTGTTGGTCACCCAATGGCCTTTCTCCGCATGTGAA
AAAGAAAATGTAAGCACTTTATAACACCCGCTTCTTCCTAATGGATATTG
TAGCCAAGCTAAAAATCTTCATGTATCCTCTTTTTAAAAATCTGAGCAAC
CCGTTTCAATTTGTGGCATTTTTTTCAAATTTGTGTAATGTTAAGAATTA
AATCCTCTTTCTTACACCCCCTTCTCTGGATCTATACCAAAATCTCCCTT
ATATTATTTGACTGGGCTCTATATATCCACATTGTATCCATTCTTTCCAT
TTTTGTAAAACCTTATGTTTTGATTTTGAGAGAAAGAAATGTAAAAAAAG
TCTCTCTAAGGGTAGGACTTTTTTCGAAAGTGGAAGAAAATTTTTGTAAA
AAGTCTAACCTTTTCAGCAAAAATCAGTTTCTCTGAGGGTCAGGGTTCGG
AGGTCCGACACGCACACATACCCAAGCATCTCTCAACACTAGAACCCCCT
CCCCCGGGTTGTACTGTCTACTTATTTTATGATCACTTTAAGGTGACTGG
TTACCACGAATGTGTCATCCCAAAATACGTTGACTCTTGGATTCTCCACG
GTTTATGGCCATCATGCAGCAATGGTGGTTATAACCCACAATACTGTTCG
CATCAAAAATTCGATTACAATAAAATCAAGGTAATTTGCAAATCATTTAG
ACAGTGCATTCTCTACTACAGGATTTATCTCCGTAATCATAAATTTTCAA
TAACNTAGATAAATTAGACAGTGCATCCACACTACTGCAGGATTTGTCCC
ATATTTTGTAATCATAAATTTTCAAGAACTTTCAGAAAAACCTGGCTTAA
TTTCAATTGAGTCCCAAATGGAATTCGTCTTTTCATACTCAGGAGTTTCT
TTACTTTTATACTTGCCTACATTCTATTATACCCATTGGTTTCCTTAAAA
CTTTCGGCTTTTGGTTTGAAAAAGTCGCGGAAAATCACGAAAATAATTTC
GCAAATCGTTTTGTAAAAGCTTTTACCAAGCGAAAATCTTGCTTAGTTTA
TCATATTATCATTTGCTTTTTAGGATTTAAAAGATCGCATGATGAAGTAT
TGGCCAAACTTGTTTGTCAATTCTGATAAATATGATTTTTGGTGAGTTCA
CAAAAAAATATAAGGATAGTAGAAAATTCAAGGTGGTTAAAAAAGACTGG
TGGCTTGAATCTTTGTAGAAAAACTAAGAAAATAGTATTATTCCATTATA
AAAGATTTCTACTTGGATAATTGCCTTATAAAGAAATTGAAAACATATCC
AACCTGAGCAGATTCCCTTAAGCCTTAGCCTTCAGGTTGAATACGTGCCA
TGCATGAAGTAACTAGAATTCGTTCGGAGATTAATCTAAGTACTTCCACA
TACTCATACACTGTGATACTGACGGCATCTCTTCTTTCTTCGCCTCCTTA
GGAAACACGAATTTGAAAAGCATGGTACATGTGCAGAAAATGTTGAAGGG
TTTGAAACAGAGCATGGTTTTTTCAAAGTTGCGTTGGATTTACGTGACAA
ATATGAGACAGGAAGGTATGTTGAAGTTAGGATATATACTTTAACGGGGT
AAAATTTCACGGAGATCAAATTTTACGGATTTTGTGGATTTGGGTGTCAT
CCGCGAAATCAAGTCCTGATGGAAATTCAGTAAGGTCTTATTCGTGAAAT
ATTTTCAAATAAAACATAAGAAAATGTCAAAAAATCTAATTTTGGAATGT
TTACTAGCATCAAAGAAGCGCTAACTATATATCAACAACCAACATCCATG
GTTTGACAGTAAAAGGCACAAAATCGTGAACATATTGTCAGTGCCATCCG
CGGAATTAAGTCCCCACGAAATCTTAAAATTTTGCGGATGAGCTCAACCG
CGTAATTCAATCTCCGCAACGTTTTATTCCATTAAAGTAAGTTTCTTTGT
AATTACAATCAGATGTCAAAGTAAATGTTGAAATTCAGAGGCCCCCAGCA
GAGTCTTTAATCACGCTATCACGCCTAAAAATATTCTCTCGTCGTGTCAT
CACAAAAAAAGGCCAAATGGCGCCCGACCACCTCAATAATCATTGTTTCT
GAATCAAAAATAGATTAGAAATACTTTTCTTCATCTTCGATCCTAGGTTT
TCTAGGTTTCCCGATTTCACTGATTAATTTAAAGATTTATAAAGATTTTT
TAACGTGTTTTTTTGTGATAGAATTTTATCAGATCATGGAATCTCACCAC
GTGATGCACCATATAAGGTAATTAACAAACTCAAACCCAAGCTCTTTAGC
ACAATTTTTTTATTCTCAAGAAAGGTGTTTCTATCATGTTCATCAGTAAA
GTAGGGCTTCTGGGTACGAGATTGGGTGATTAAATAAAGTTAGTTAGCAC
AAAACCTTAAAATTGCCTATGAAACACCGCGGAGGAACATTAACACCCGT
TATGAATTCAGCTAAAGTTTAAGTATATATTTACTCATTTACTTAAAACA
AGAAAGCCTAAGCGGCGTAAAGGCCCAGCTGTGTTGCCACTGTCAGCATA
TTTTTCTTCTGCAGAATCGCCATACAACATGAACGAATTTTTTCAATGTA
TAGACTCGAGTCGGGCGAGCAATAAAGATTTGATTACTTTAAACTATTTT
ATACTAGTAATTCAGAAAGAAAGATTTGACCATATAAGCTGGAGGTATTA
ATGATATGTGTTTTTTTCTTACGCATGCGCACAATAGAAAGTCAGGTAGT
TCGATTTTAAGCTGGAATCGTCGATTGATAATTGCGCACATTAAAGGCCC
CGACAAAGTCAATTTTTTTCGACCAGTTGTGTTTTAAAGGCCCATTGCGC
TGGCCCATGGGCCAAATATCTGAAGCATGAAATCAAATGATATTTATGTT
TTTTTATAGGGAGCTGATGTCAAGCATGCATTGAACAAAGGATTGAACGC
TAAAGGGTGTGCCGCCTGTAAAAGAGTCAAAGTAAGTCGATTTATACGCC
CCTGTCCCACTGTCCCAGTGGAATATCCTTTCTATAGAAATTCAACATGG
ATAGAAATTCTAATGTTCCAAGCTCAAAATTCCAGTAGGGATAGTTTAAG
TGTGCCAATCTTTATATTGAAATTTCGAAAGGGGGTGAAGTCGAATTCAA
ATTGTAGGGTATTCTTTCCCACGCCGGGGACGGAATTTCAACCAAATTTT
TCAGAAGGTTATTAGTGATGCAAATCCACACTATAATCCCAACATTCTTA
ACTTTTTTTCGTTTAGGGTATTGATGGATATGTATTGATGAGTACAAGTG
TTTGTCTCAACAAATCCTTACAATTGGTCAACTGTCCTTATTGTAGAGGA
GAATGTTATGATGACGATATTGTTTATTACCAACCCATACACTGAAGTAT
CTTTCTTTCGAATTTATTGTCATTAGTTTTTTTTATGATTTTTAATAATT
TTTATTAAAATTTAGCCACAAACGCTCTTAAAAAAGGCCAAAAAGTCGCT
CACATGGGAAAAATTTCTTATGATATCAAATCTTATTGGAATTAGCATGA
ATGAAGGTTGAAAGCAATGCAACAGGATTGTAAATCCTAGACTTTAAGTT
TAAAGTTATTTTTAATATTTTTCAAAGCCAAATATCTTAGGCGCGGTCGT
TAAGGATACTCTACGTTTTTCAGGTTTTTCGAAGTGCATCGTAAAGGGTG
TATGTAAAAAGGGAGAAAAACAAAGCTTTCGGATTAAATTTTGGAAAATG
CTTTTTTCATATTTTCATAAATCAACATGTTTTAAAAGAAAATATATAAA
AACCTTATGCAACCTCGTCCCAAAATAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041639XLOC_041639Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066585-exon-scaffold_456-1575043694:764563..764646TCONS_00066585-exon-scaffold_456-1575043694:764563..764646Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1575043694:763388..763490TCONS_00066585-exon-scaffold_456-1575043694:763388..763490Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1575043694:762767..762904TCONS_00066585-exon-scaffold_456-1575043694:762767..762904Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1575043694:762306..762373TCONS_00066585-exon-scaffold_456-1575043694:762306..762373Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1575043694:761882..761995TCONS_00066585-exon-scaffold_456-1575043694:761882..761995Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1575043694:761180..761225TCONS_00066585-exon-scaffold_456-1575043694:761180..761225Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1575043694:760466..760537TCONS_00066585-exon-scaffold_456-1575043694:760466..760537Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1575043694:759618..760180TCONS_00066585-exon-scaffold_456-1575043694:759618..760180Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1510915933:764563..764646TCONS_00066585-exon-scaffold_456-1510915933:764563..764646Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1510915933:763388..763490TCONS_00066585-exon-scaffold_456-1510915933:763388..763490Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1510915933:762767..762904TCONS_00066585-exon-scaffold_456-1510915933:762767..762904Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1510915933:762306..762373TCONS_00066585-exon-scaffold_456-1510915933:762306..762373Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1510915933:761882..761995TCONS_00066585-exon-scaffold_456-1510915933:761882..761995Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1510915933:761180..761225TCONS_00066585-exon-scaffold_456-1510915933:761180..761225Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1510915933:760466..760537TCONS_00066585-exon-scaffold_456-1510915933:760466..760537Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1510915933:759618..760180TCONS_00066585-exon-scaffold_456-1510915933:759618..760180Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1491911889:764563..764646TCONS_00066585-exon-scaffold_456-1491911889:764563..764646Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1491911889:763388..763490TCONS_00066585-exon-scaffold_456-1491911889:763388..763490Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1491911889:762767..762904TCONS_00066585-exon-scaffold_456-1491911889:762767..762904Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1491911889:762306..762373TCONS_00066585-exon-scaffold_456-1491911889:762306..762373Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1491911889:761882..761995TCONS_00066585-exon-scaffold_456-1491911889:761882..761995Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1491911889:761180..761225TCONS_00066585-exon-scaffold_456-1491911889:761180..761225Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1491911889:760466..760537TCONS_00066585-exon-scaffold_456-1491911889:760466..760537Clytia hemisphaericaexon
TCONS_00066585-exon-scaffold_456-1491911889:759618..760180TCONS_00066585-exon-scaffold_456-1491911889:759618..760180Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:759618..764646 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

min expression (0 tpm) - - (105.174 tpm) max expressionaGrOo_1GrOo_2FGOo_1FGOo_2EG_1EG_2P1_1P1_2P2_1P2_2P3_1P3_2PoPr_1PoPr_2St_1St_2GO_1GO_2PH_1PH_2BMF_1BMF_2MMF_1MMF_2M_1M_2GEC_1GEC_2GEN_1GEN_2
Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.68384	1.44888	3.4056	2.12757	0.09774	0.103445	0.883638	1.0032	2.23141	1.24486	2.42975	1.42395	0.968993	0.650764	0.322898	0.220829	8.96103	6.24255	0	0	70.6292	69.1991	22.8054	25.7586	21.4118	15.245	7.68568	7.04523	105.174	84.5873
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066585 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
ZOOM
x 1
POSITION
0
10020030040050060070080090010001100Expect = 6.82e-23 / Id = 31.98SequenceRNT2
Match NameE-valueIdentityDescription
RNT26.817e-2331.98Ribonuclease T2 OS=Homo sapiens GN=RNASET2 PE=1 SV... [more]
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