TCONS_00066551 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066551
Unique NameTCONS_00066551
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1382

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066551 ID=TCONS_00066551|Name=TCONS_00066551|organism=Clytia hemisphaerica|type=transcript|length=1382bp
CAGTTTTTCAATATGAATCATGCTGCTCTATTGTCCTCGGGAACGACAAT
TTATATGTCAATGTTTTGAATGGTACAAATTATCGCAGTCTTATATTGAA
TGTACTTGTAAGCATTTGCTTATGTATATATACGTGTCGTtgggaaataa
aaaatgaaagacgAACGTTCGTTGACAGTCAAAGATTCAAaaatgttCGA
TATGTTAACACGACATAGCCGTAATCGATATCGGATCATTGTTCTATCCT
TAATCTTCGTCACATCAATATACGTTTTTCTTAATAAACGTAATTGGGCA
TGGTACAATCGGTCTAGTGGGGAGAGTATTTGTGAAACACCAGAGCCTGA
AATGAAGGACTTGATTGCACTAGCGACTGATACCCGTGACGTCTTACACG
GACTGAAAATGACGTATTTCTTGATATATGGCAGCCTGTGGGGCGCATTA
CGACACAATCGACCACTAGCCTGGGACAACGATTTCGATATCGGTTTAGT
TTACGAAGAACTAAAAGATAATGGATTAGaacaaaaactttataaagaac
ttcaaaagaaaaatatcaaaatttattatcGGTTATGGTTCGGTACCTAT
CGGGTTACTCGGGATACCGCACGTGGTGATTTGATGATATACCGACGAAA
CTATTTTGATACTTGTGTACGGTTAGGTATGGAGTCGTGGGTTTTCTTTG
TGAATTATCGTAAGTATCATCAATTCCCATGTCGATTGATTAAGAAACCA
TTACCTagtatgaaattttcaaaagtgaaCTTCACGGTACCGAGAGAAgg
aaatgaaattcaaaaacatttttatccaGAAGACTGGTGGGTTGAAAGTA
AACCATCTGGTTGTTGATGATGTTGATGAAACATTCAGAAACATTCTACG
ATTTTAGCTTCTTGatttttcaatgaatttaaGACTTGAAAATGTTCAAG
TATCATATGCCGGAGCAACACTGTTGTTATTCCGTTGTTGCTAGATTTAG
TTAGTTTATATTAAGTNCGGAGTAACACTGTTGTTATTCCGTTGTTGCTA
GATTTAGTTAGTTTATATTAAGTCcgaacttgatttttcaaaatgtgaaa
tGAATGATTCTCTGATATAATATTTGGGCGAATATTAAACGTCGTCGAGT
CAAAGcacatttaagggctctgaccatagtcgaaaaattgattttagtat
ttgaacataaaagttatgtttaacacttttaacaaagaattgcctttaca
aattgcttaagagtaattaaaaatttaattacaaaaatgacgctatgaac
tttaaaaagacgttaataatatgttgtattaccttcttttataaaaagtg
ctaacttttgatagtttttttcaaactgttcg
Run BLAST on NCBI

transcript from alignment at scaffold_456:442634..445999-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066551 ID=TCONS_00066551|Name=TCONS_00066551|organism=Clytia hemisphaerica|type=transcript|length=3366bp|location=Sequence derived from alignment at scaffold_456:442634..445999- (Clytia hemisphaerica)
CAGTTTTTCAATATGAATCATGCTGCTCTATTGTCCTCGGGAACGACAAT
TTATATGTCAATGTTTTGAATGGTACAAATTATCGCAGTCTTATATTGAA
TGTACTTGTAAGCATTTGCTTATGTATATATACGTGTCGTTGGGAAATAA
AAAATGAAAGACGAACGTTCGTTGACAGTCAAAGATTCAAGTTAGTTTTA
TTTATTTTTGAGTTTCTCAAAAAGTCTTTCAATTTCTATTCATTGGGTAG
TATATGATGGTCTAGGGCTCACATTTTTTAATTATATATTTTTCACCGGT
TATAAAAATGAATATCCTAAGAATTTTCTACCAATGTAGTTTAGCCTTAA
AAACTATAGCTAGAGTGTAGTGTAAAACAAAGGCAAAGTTTCTCCACGCT
TTCAGGCTTGCACCAACACCTTCGAGAAAAGTTGTTGTTGTGCCAAAAAT
GAAAAAACGGTTTTCATAATTGCGTAACTTTACTAAATACACGCTTTTTT
TTATAAGAATGGTGTAAATCCATTTCATCATGGATATTCTTAACTTTTTT
GGGGAAATCATCCTAAAATATTGTTACAGCATTCTTAGGTTAGGATCCTA
ATTCAGACTAGATTTAACATTTAGTACATACGTCTCAAGCAGAAAATGGC
ATTTTTGTGAAAGAAGTGAACCTTACTTGAGGGCAATTGACAATTTATAA
TCGAAAATACTCTCGGGTACCTAATAGCCGCCCCCCCTGCTAATTAATTT
TTGGGAAAATGTTTTTGAAAGTTCCCTCTTTTGTCCTAATTCAGCTGTAT
TAGCCTCCATTTCAAAAATTTTCCACCCAGGACATTTTTATTCCAACCCC
CCCCCCCCCCCTCTTTCTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNCACTTATTAAGTTTTGAGATTTTTTCC
AACCCCCCGGCTATTAGGTACCCGAGAGTAGGTTGTTTTGAGGTTTTGGC
CAATTTTCAGTTTCACTCTTAGTTCTTATAAAAAAAGCGTGTATTTAAAG
TATTGCAAAAGCAATCTTTCCTAACTCCTAACATTTTATCAACATCACAT
TTCATAAATTACGTCACGAACATCACTTGCCTCGTATTCAAACAATTTCT
ATGGAGATTATATAGGAAGTAGTTTTAATAAAATCCGCTGGGAGCTAATC
ACCAATGCAACAATTTCAAAACGAGGCACGTGATGTTCGTAACGTAATTT
ATGAAAAGGTCTATTCTTTTCTTTTTTAGAAATGTTCGATATGTTAACAC
GACATAGCCGTAATCGATATCGGATCATTGTTCTATCCTTAATCTTCGTC
ACATCAATATACGTTTTTCTTAATAAACGTAATTGGGCATGGTACAATCG
GTCTAGTGGGGAGAGTATTTGTGAAACACCAGAGCCTGAAATGAAGGACT
TGATTGCACTAGCGACTGATACCCGTGACGTCTTACACGGACTGAAAATG
ACGTATTTCTTGATATATGGCAGGTATGTTTATTTGAAGTTTTTCTCTCT
GATGGTATTGAAACTTTTTTCGGATTGTTATTGTAAGCTTATTTTTTATA
AGAAAGAATATTTTTAAAGCCTTTGGATGTTCTTAACTTTTTGGGTTTTA
TGCCTTAAATGTGATCATAGTCCGTATAAAAAACCCCGGTCTGGAAGCCT
TTTGTTTCTTTCTATTGAACTTGAACTTGCATTGAGAAATTATTTTATTT
TGCTCACTTTTTGATCATGTGATTAACTTTTGAACCAATCCCAAGAGGAG
TATTGGTAATGTGATCCAAAACTGAGCAAATCGATTTTTATCTTTTGAAA
TTATCAACAAATGAAAAAGTTAATAAATAGTTACACAAAAGGCTTTTAGA
CCAGGGCTTTTTATACGTTCATAGTTAGAGGGGGGGGTCTTAGGTTTTGA
TGAACCAAAAGCAAGGGGGTGCTAAAAGTATGACTTTCTTAAGGGGGGTT
GCCAGTTAAGGGGGGTCTTTTTACCTAAGGGGGGTCTTCTTACCTAAGGG
GGGTCTTCTTACCTAAGGGGGGTCTTCTTAGATAAGGGGGATCTTCCTTG
AATTATGACTCTTGTACAATCGTTTCATTTATACTGATTTTCTAAGGGGA
GGGTGTAAAATTTTAAATGAATTTCATAAGGGGGTTAGCACTTAATGGGG
GGTCCTCTTACCTAAGGGGGGGGGTCTTGACCCCTCTAGAAACTATGAAT
ACGGACTATATGACGTGATAAAGTGATGTCACTGAATCCTGATGCATGGT
TGTGTTCAAAAAGTCAATACTATAGAGAACAATATGATACGAACGTTTGA
ATTTCCATCATTTTTTAGCCTGTGGGGCGCATTACGACACAATCGACCAC
TAGCCTGGGACAACGATTTCGATATCGGTTTAGTTTACGAAGAACTAAAA
GATAATGGATTAGAACAAAAACTTTATAAAGAACTTCAAAAGAAAAATAT
CAAAATTTATTATCGGTTATGGTTCGGTACCTATCGGGTTACTCGGGATA
CCGCACGTGGTGATTTGATGATATACCGACGAAACTATTTTGATACTTGT
GTACGGTTAGGTATGGAGTCGTGGGTTTTCTTTGTGAATTATCGTAAGTA
TCATCAATTCCCATGTCGATTGATTAAGAAACCATTACCTAGTATGAAAT
TTTCAAAAGTGAACTTCACGGTACCGAGAGAAGGAAATGAAATTCAAAAA
CATTTTTATCCAGAAGACTGGTGGGTTGAAAGTAAACCATCTGGTTGTTG
ATGATGTTGATGAAACATTCAGAAACATTCTACGATTTTAGCTTCTTGAT
TTTTCAATGAATTTAAGACTTGAAAATGTTCAAGTATCATATGCCGGAGC
AACACTGTTGTTATTCCGTTGTTGCTAGATTTAGTTAGTTTATATTAAGT
NCGGAGTAACACTGTTGTTATTCCGTTGTTGCTAGATTTAGTTAGTTTAT
ATTAAGTCCGAACTTGATTTTTCAAAATGTGAAATGAATGATTCTCTGAT
ATAATATTTGGGCGAATATTAAACGTCGTCGAGTCAAAGCACATTTAAGG
GCTCTGACCATAGTCGAAAAATTGATTTTAGTATTTGAACATAAAAGTTA
TGTTTAACACTTTTAACAAAGAATTGCCTTTACAAATTGCTTAAGAGTAA
TTAAAAATTTAATTACAAAAATGACGCTATGAACTTTAAAAAGACGTTAA
TAATATGTTGTATTACCTTCTTTTATAAAAAGTGCTAACTTTTGATAGTT
TTTTTCAAACTGTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041631XLOC_041631Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066551-exon-scaffold_456-1575043694:445810..445999TCONS_00066551-exon-scaffold_456-1575043694:445810..445999Clytia hemisphaericaexon
TCONS_00066551-exon-scaffold_456-1575043694:444427..444670TCONS_00066551-exon-scaffold_456-1575043694:444427..444670Clytia hemisphaericaexon
TCONS_00066551-exon-scaffold_456-1575043694:442634..443581TCONS_00066551-exon-scaffold_456-1575043694:442634..443581Clytia hemisphaericaexon
TCONS_00066551-exon-scaffold_456-1510915933:445810..445999TCONS_00066551-exon-scaffold_456-1510915933:445810..445999Clytia hemisphaericaexon
TCONS_00066551-exon-scaffold_456-1510915933:444427..444670TCONS_00066551-exon-scaffold_456-1510915933:444427..444670Clytia hemisphaericaexon
TCONS_00066551-exon-scaffold_456-1510915933:442634..443581TCONS_00066551-exon-scaffold_456-1510915933:442634..443581Clytia hemisphaericaexon
TCONS_00066551-exon-scaffold_456-1491911889:445810..445999TCONS_00066551-exon-scaffold_456-1491911889:445810..445999Clytia hemisphaericaexon
TCONS_00066551-exon-scaffold_456-1491911889:444427..444670TCONS_00066551-exon-scaffold_456-1491911889:444427..444670Clytia hemisphaericaexon
TCONS_00066551-exon-scaffold_456-1491911889:442634..443581TCONS_00066551-exon-scaffold_456-1491911889:442634..443581Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:442634..445999 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.2714	24.5698	7.30804	6.55654	14.4039	15.5645	3.80102	6.65599	9.26037	10.5887	3.51047	4.42574	2.18164	1.31402	0.712483	0.877719	1.93496	0.594339	3.96439	4.90947	0.90047	0	15.0252	15.3801	0	0.623512	0.181108	0	5.83278	8.59677
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066551 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top