|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00066539 ID=TCONS_00066539|Name=TCONS_00066539|organism=Clytia hemisphaerica|type=transcript|length=4351bpRun BLAST on NCBI transcript from alignment at scaffold_456:201131..258021- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00066539 ID=TCONS_00066539|Name=TCONS_00066539|organism=Clytia hemisphaerica|type=transcript|length=56891bp|location=Sequence derived from alignment at scaffold_456:201131..258021- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00066539 vs. Swiss-Prot (Human)
Match: ATG2A (Autophagy-related protein 2 homolog A OS=Homo sapiens GN=ATG2A PE=1 SV=3) HSP 1 Score: 556.214 bits (1432), Expect = 5.101e-168 Identity = 379/1152 (32.90%), Postives = 579/1152 (50.26%), Query Frame = 3
Query: 15 MPRILINLTPPSSRSVFETSEGLSKDDSSPDSIEDQYPWMKSEPSPFSTQPNMYNENEEMVTPGSVNEMNAFQEFVSSNTSMAVNCYFPSMRMNLHTNEVFELFYNRIFGDLVMFEPT----APAPVELPSKMNNPYESVHINLASHIGQLDSGMANLNAGDKFFMCRSAVRGD-----TYDSHSTGDDTSLFSGDFYNDAYTRQ------HQQTNFSFSLHIDDGKIALFPPLNPATETENKEDTLHEDSDESLLGHVVISAKEAHLFVASGFKGKTNLDFIELYTNTIDFYHNSILNESIDFMLMQDALCIDY-----LEQTIYPSMPSIQKKCRASCRPEGTA--MLSLAMKCVSHPESKRKENTVSVAIRGGTLKHRVLPSGHSWLTQIMDFMDIKDFAITGYTFPSVVTTLHMHLWGCAIDYRPLHIPIHSLLTMESFSLSSNIIPGSSTSILRFIFEDSALHLCDRSLNDMCDF-DEFVSVLDMGIFELSLKF--NSDKGK-KQPVFEMTMSNNLLNIRTCADSCVALMKLVQYFASDGDLQ--------TGIAAEI--------------------ERDFNESL---ELASQELSQPAPSQLPTTSEV----VEGER--ENDSIDIHSLMIDAMNDTDEMVDDRFQGTVIDEHIDEETGDESDTSADEFCLLDDAQAEVQD-EFEPVLRQISDIRINLIENFIPIPQGKHDQLLSPDGYPCATHRYTIKEMSLMWQMYGGSDFTLPKXXXXXXXXXXXXXXQYNNPMSKGKSDKANRANRVAGGPNRDLETLMELQMNKIRFQHEVFP-ETA------------KQIYRDVLLVYDLELRDRLTSSMINKFLYRFSSENMPKQSSANMISIRLLVTKPEDSARSEEAALRISLQPLRFNVDQDSLFFLREFFTK-VGGMS----SSTNAPNRPPSAGNRXXXXXXXXXXXXXXXXNYLSGSPATGTEPFXXXXXXXXXXXXXXXXHLXXXXXRASVGDTPTIRHTPSTESLKSTEQPSLFIKSFLFSPEVPIRLDYHGKYVNIEK-GTLAGLIMGLSQLNCSELKLKRLCSRSGLLGADKLVNFIINEWLNDIKQNQLQSILGGVGPAYSLMQLFQGLKDLFWMPVLQYRQDGRIVRGIQKGAHS 3221
+P++++ + P SS + +E + K + S+E + EPSPFS++ MY E EEMV PG EM FQ + + ++ PS+ + L + EV+E YNRI DL+M+EP P P PS P H D F MC+SA + T DS S +D FS H Q+ FS + + G+I ET+++ E++ G +V+ + LF S + G+ L + L YH + ++ D+ L + L TIYPS + ++ + + +G MLS A++ P KE V++ + TL+H + SW +Q+++F+D+ D + GY P+V+T LH HL+ C++DYRPL++P+ L+T E+F+LSSNII +ST +LRFI +DSAL+L D+ + D ++V VLD+ + EL +K S +GK QP+FE+ SNN++++ +CADSC L+ L+QY S GDL T IA + +RD ++L E + +EL+QP+ LP S + GER ++ E +D + + +D +DEFC+LD + + EPV+ Q+ I + + + P G D L +P +P + R ++E+SL+W +YGG DF P ++ + ++P ++ + R GG R LME+Q++K+ FQHEV+P E A + + R V +V +LE+RDRL SS INKFLY +SE MP+++ +NM++I+ L P + E LR+SL PLR NVDQD+LFFL++FFT V G++ T+A RP + S G TG++ + P H+PS +Q ++ + F F+ EVPI LDYHGK+V +++ GT AGL++GL+QLNCSELKLKRLC R GLLG DK++ + +NEWL DI++NQL +LGGVGP +S++QLFQG +DL W+P+ QYR+DGR++RG+Q+GA S
Sbjct: 733 LPQVVVTVNPQSSSTQWEVAP--EKGEELELSVESPCELREPEPSPFSSKRTMY-ETEEMVIPGDPEEMRTFQSRTLALSRCSLEVILPSVHIFLPSKEVYESIYNRINNDLLMWEPADLLPTPDPAAQPSGFPGPSGFWH--------------------DSFKMCKSAFKLANCFDLTPDSDSDDEDAHFFSVGASGGPQAAAPEAPSLHLQSTFSTLVTVLKGRITAL------CETKDEGG----KRLEAVHGELVLDMEHGTLFSVSQYCGQPGLGYFCLEAEKATLYHRAAVD---DYPLPSHLDLPSFAPPAQLAPTIYPSEEGVTERGASGRKGQGRGPHMLSTAVRIHLDPHKNVKEFLVTLRLHKATLRHYMALPEQSWHSQLLEFLDVLDDPVLGYLPPTVITILHTHLFSCSVDYRPLYLPVRVLITAETFTLSSNIIMDTSTFLLRFILDDSALYLSDKCEVETLDLRRDYVCVLDVDLLELVIKTWKGSTEGKLSQPLFELRCSNNVVHVHSCADSCALLVNLLQYVMSTGDLHPPPRPPSPTEIAGQKLSESPASLPSCPPVETALINQRDLADALLDTERSLRELAQPSGGHLPQASPISVYLFPGERSGAPPPSPPVGGPAGSLGSCSEEKEDEREEEGDGDTLD----------SDEFCILDAPGLGIPPRDGEPVVTQLHPGPIVVRDGYFSRPIGSTDLLRAPAHFPVPSTRVVLREVSLVWHLYGGRDF----GPHPGHRARTGLSGPRSSPSRCSGPNRPQNSWRTQGGSGRQHHVLMEIQLSKVSFQHEVYPAEPATGPAAPSQELEERPLSRQVFIVQELEVRDRLASSQINKFLYLHTSERMPRRAHSNMLTIKALHVAPTTNLGGPECCLRVSLMPLRLNVDQDALFFLKDFFTSLVAGINPVVPGETSAEARPETRAQ-----------PSSPLEGQAEGVETTGSQ------------------------------EAPGGGHSPS-----PPDQQPIYFREFRFTSEVPIWLDYHGKHVTMDQVGTFAGLLIGLAQLNCSELKLKRLCCRHGLLGVDKVLGYALNEWLQDIRKNQLPGLLGGVGPMHSVVQLFQGFRDLLWLPIEQYRKDGRLMRGLQRGAAS 1788 HSP 2 Score: 213.001 bits (541), Expect = 2.207e-55 Identity = 102/192 (53.12%), Postives = 138/192 (71.88%), Query Frame = 1
Query: 3229 ILGGVGPAYSLMQLFQGLKDLFWMPVLQYRQDGRIVRGIQKGAHSFSTSTAMAVLELSNKLVSTMQGLAELTFDMVSSGPSHVSSRQSTTQA------AHPAELREGIANAYTVLTEGLSETASNLVRVATEEHEKKGMTGAVGGVLRQIPPTVVKPLILATEATSNVLGGAMNQLQPDKREEALQKWKQNS 3786
+LGGVGP +S++QLFQG +DL W+P+ QYR+DGR++RG+Q+GA SF +STA A LELSN+LV +Q AE +D++S S Q A PA+LREG+A AY + EG+ +TA + VA+ HE+KG+TGAVGGV+RQ+PPTVVKPLILATEATS++LGG NQ+ PD ++ KW+ +S
Sbjct: 1744 LLGGVGPMHSVVQLFQGFRDLLWLPIEQYRKDGRLMRGLQRGAASFGSSTASAALELSNRLVQAIQATAETVYDILSPAAPVSRSLQDKRSARRLRRGQQPADLREGVAKAYDTVREGILDTAQTICDVASRGHEQKGLTGAVGGVIRQLPPTVVKPLILATEATSSLLGGMRNQIVPDAHKDHALKWRSDS 1935 The following BLAST results are available for this feature:
BLAST of TCONS_00066539 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.