TCONS_00066530 (transcript) - C. hemisphaerica

Overview
NameTCONS_00066530
Unique NameTCONS_00066530
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length189

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00066530 ID=TCONS_00066530|Name=TCONS_00066530|organism=Clytia hemisphaerica|type=transcript|length=189bp
AGAAGACTTACATAAAGAagagaagaaaatcaacaatgTTGCTCAAAAAA
TCAATGAACTGATTGATAACGAAatgatgaaagaaaaagaaaggttGAAT
GAATTGAAgaGAGAAATGAAGAGGAACGAAGAGTTAAAAATGAACAAAGC
TGCCATTTGTATTCAGAAGAATTTTCGAATGGCTAAGTA
Run BLAST on NCBI

transcript from alignment at scaffold_456:832287..834536+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00066530 ID=TCONS_00066530|Name=TCONS_00066530|organism=Clytia hemisphaerica|type=transcript|length=2250bp|location=Sequence derived from alignment at scaffold_456:832287..834536+ (Clytia hemisphaerica)
AGAAGACTTACATAAAGAagagaagaaaatcaacaatgTTGCTCAAAAAA
TCAATGTTAGTATTGAAACAATTTTATATACTTTTACCAGGCACCATGAC
TGCTATTTTTGCTTCTATTAAAGGCTAGTCTTTGAATATCTGATTAGAAT
GAATTCAATTTTAAGGATGAGTCATTTTAAATCCTCGTGGTTCGGGACAA
ATATGAGATTGCACCAACATATGAATAGAATGTGTCATGTGTCATTTGGC
TATTCTTTAATTACAACGGTCACGTGTTGAGCTGTTCTTCAAACTTGTGA
ATAAATAACGGTTTATTACCATAGGAACTGATTGATAACGAAatgatgaa
agaaaaagaaaggttGAATGAATTGAAggtactttttcatttaaatatct
ttgttctaattattaaaggttttgtttttatataagtgttcccttttcat
atcagacacatatttcatatcaggacagtgtcttgctattgttatattat
gcttatataagcaaaaaatgtttttcttttcNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCTAtgctcttatttaa
aaacaaaacctttaactgaagattttttaaatcagtttttCGAGGCTCGA
TATAAAATATTGGTTCGAGCGAGGCTAGGGTAAAGTTGTTCGAATTACCC
AGCCGGGACACAACGTCCATGTAATGTTAAAACGACCTTCGAAACTACGT
TCTGTGTCAGCTGGGTTTGTCTCTGAATTTCGTCTTTATTGAAGCGATTG
AACTTGACTATCGAAATTACTACAgtgaagtctccataactcaaaactct
ataacttgaatgtctccttaactcgaatgtctccttaactcaaacaagtt
ttctggtctCCTCAACTATCAATGCTTTATAAACTCTCTAAAtaaagtct
ctttaactcgaaatttccataattcgaacataTTTGCGTTCCCCGTGCAT
GTTCGAATATGAGGAACCTTTAGCATCTAGGACGGCGACTTGAATGAGGA
CGTGAattaaatcttaaaatcaaatgGCAAATTTTATCCGATTTTACATA
GATTTAATATCACATAAACAAATTTCAATTAAGtcaagtttttgtaaaaa
aatgacgTTATAATTCTCTAGGGATTCATATCATTTAAAGCTACTGTACT
CTTCCTTTACCGTCGTCGTCCCAAAAGCGAcgacaaaaaagaattttcaa
gttCTCTTGAGATTTAAAAACGACCATTAATTACCCTATTAAAATTCACT
ATTCTCATGTGAAAGTTGATATGAAAAGAATAAAACTTAGCTGAGATCCT
TATATCAATCCCCTAAGggctttctttttgttcaatctTGCCGTACTTTT
TCAAAGTCACCGTCCTAGATGCTAAAGGTCCCTATGGAGACTCAATTGTA
CTTTTTTGAAACTATATTCTGACTCGTGCGTCGAATTTTATATCAGGGCT
GACACGGAATTGTAATTTTCTTACAGCGGTCTAAAAAGTCTAGGCACACC
GTGGGCCTATAAGAATTGATCTTGCTTTACTATgatttaaaaattctttt
taatcaaaagtaTTCACGGGGACCACTCGCTCGCAAGACTATTTACTTGT
TTTACCATGAGAAAAATTGCATACTGATTAttctatattttttattcttc
ttgtCAACTTCCTCATGAATTTGGAATACTGAAATCAATATATTGCATAA
CTTtattttttgggtttcagaGAGAAATGAAGAGGAACGAAGAGTTAAAA
ATGAACAAAGCTGCCATTTGTATTCAGAAGAATTTTCGAATGGCTAAGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_041622XLOC_041622Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00066530-exon-scaffold_456-1491911889:832287..832341TCONS_00066530-exon-scaffold_456-1491911889:832287..832341Clytia hemisphaericaexon
TCONS_00066530-exon-scaffold_456-1510915933:832287..832341TCONS_00066530-exon-scaffold_456-1510915933:832287..832341Clytia hemisphaericaexon
TCONS_00066530-exon-scaffold_456-1575043694:832287..832341TCONS_00066530-exon-scaffold_456-1575043694:832287..832341Clytia hemisphaericaexon
TCONS_00066530-exon-scaffold_456-1491911889:832611..832664TCONS_00066530-exon-scaffold_456-1491911889:832611..832664Clytia hemisphaericaexon
TCONS_00066530-exon-scaffold_456-1510915933:832611..832664TCONS_00066530-exon-scaffold_456-1510915933:832611..832664Clytia hemisphaericaexon
TCONS_00066530-exon-scaffold_456-1575043694:832611..832664TCONS_00066530-exon-scaffold_456-1575043694:832611..832664Clytia hemisphaericaexon
TCONS_00066530-exon-scaffold_456-1491911889:834457..834536TCONS_00066530-exon-scaffold_456-1491911889:834457..834536Clytia hemisphaericaexon
TCONS_00066530-exon-scaffold_456-1510915933:834457..834536TCONS_00066530-exon-scaffold_456-1510915933:834457..834536Clytia hemisphaericaexon
TCONS_00066530-exon-scaffold_456-1575043694:834457..834536TCONS_00066530-exon-scaffold_456-1575043694:834457..834536Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_456supercontigscaffold_456:832287..834536 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	26.0913	22.6794	9.94974	11.6435	3.26076	6.05848	7.84067	14.1739	3.86024	8.01779	4.39448	2.35797	4.35724	1.48868	6.17007	4.30435	0	0	0	0	27.0044	29.6625	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00066530 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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